Miyakogusa Predicted Gene

Lj6g3v0896480.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0896480.1 Non Characterized Hit- tr|I1N0T6|I1N0T6_SOYBN
Uncharacterized protein OS=Glycine max PE=3 SV=1,90.21,0,TRYPTOPHAN
SYNTHASE BETA CHAIN,Tryptophan synthase, beta chain; SER/THR
DEHYDRATASE, TRP SYNTHASE,NU,CUFF.58445.1
         (470 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g049410.1 | tryptophan synthase beta type 2 | HC | chr3:18...   842   0.0  
Medtr3g051120.1 | tryptophan synthase beta type 2 | HC | chr3:20...   780   0.0  
Medtr5g005670.1 | tryptophan synthase beta type 2 | HC | chr5:56...   503   e-142
Medtr6g016665.1 | tryptophan synthase beta chain | HC | chr6:637...   127   2e-29

>Medtr3g049410.1 | tryptophan synthase beta type 2 | HC |
           chr3:18406693-18402343 | 20130731
          Length = 466

 Score =  842 bits (2176), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/469 (88%), Positives = 436/469 (92%), Gaps = 7/469 (1%)

Query: 4   SSIASLNSPSRLLSIPKEPY-PSSHFSSNLLKFAAPRTPS-SSVSCSLTRDPASVLPLEQ 61
           SSI +LNSP +LL I KE   P SHF SN LKFA+  + + S+VSCS+ RD +SVLPL+ 
Sbjct: 3   SSITNLNSP-KLLPISKEQTNPFSHFPSNTLKFASLSSRTFSNVSCSVIRDTSSVLPLQD 61

Query: 62  RVELNNGALLHQRPDSFGRFGKFGGKYVPETLMHALTELEAAFHSLTADEDFQRELAGIL 121
                NG+++ QRPDSFGRFGKFGGKYVPETLMHALT LEA+FHSL  DEDFQ+ELAGIL
Sbjct: 62  A----NGSVVLQRPDSFGRFGKFGGKYVPETLMHALTLLEASFHSLAGDEDFQKELAGIL 117

Query: 122 KDYVGRESPLYFAERLTEHYKRPNGEGPHIYLKREDLNHTGAHKINNAVAQALLAKSLGK 181
           KDYVGRE+PLYFAERLTEHYK  NGEGPHIYLKREDLNHTGAHKINNAVAQALLAK LGK
Sbjct: 118 KDYVGRETPLYFAERLTEHYKNANGEGPHIYLKREDLNHTGAHKINNAVAQALLAKKLGK 177

Query: 182 KRIIAETGAGQHGVATATVCARFGLECIIYMGAQDMERQALNVFRMRLLGAEVRPVHAGT 241
           KRIIAETGAGQHGVATATVCARFGLECIIYMGAQDMERQALNVFRMRLLGAEVRPVHAGT
Sbjct: 178 KRIIAETGAGQHGVATATVCARFGLECIIYMGAQDMERQALNVFRMRLLGAEVRPVHAGT 237

Query: 242 ATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVREFHAVIGKETRKQALEKWGGL 301
           ATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVREFHAVIGKETRKQALEKWGG 
Sbjct: 238 ATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVREFHAVIGKETRKQALEKWGGK 297

Query: 302 PDVLIACVGGGSNAMGLFHEFVDDKDVRLIGVEAAGFGLDSGKHAATLTKGEVGVLHGAM 361
           PD+LIACVGGGSNAMGLFHEFVDD DVRLIGVEAAGFGL+SGKHAATLTKGEVGVLHGAM
Sbjct: 298 PDILIACVGGGSNAMGLFHEFVDDSDVRLIGVEAAGFGLNSGKHAATLTKGEVGVLHGAM 357

Query: 362 SYLLQDDDGQIVEPHSISAGLDYPGVGPEHSFLKDLGRAEYYSITDEEALEAFKRVSRLE 421
           SYLLQDDDGQIVEPHSISAGLDYPGVGPEHSFLKDLGRAEY+SITD+EALEAFKRVSRLE
Sbjct: 358 SYLLQDDDGQIVEPHSISAGLDYPGVGPEHSFLKDLGRAEYHSITDDEALEAFKRVSRLE 417

Query: 422 GIIPALETSHALAYLEKVCPTLPNGTKVVLNFSGRGDKDVQTAIKYLKV 470
           GIIPALETSHALAYLEK+CPTLPNGTKVV+NFSGRGDKDVQT  KYLK+
Sbjct: 418 GIIPALETSHALAYLEKICPTLPNGTKVVVNFSGRGDKDVQTVTKYLKL 466


>Medtr3g051120.1 | tryptophan synthase beta type 2 | HC |
           chr3:20169884-20174798 | 20130731
          Length = 412

 Score =  780 bits (2013), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/412 (89%), Positives = 394/412 (95%)

Query: 59  LEQRVELNNGALLHQRPDSFGRFGKFGGKYVPETLMHALTELEAAFHSLTADEDFQRELA 118
           +E     + G++  QRPDSFGRFG+FGGKYVPETL+HALTELEAAFHSL +DEDFQ+ELA
Sbjct: 1   MENHNNNDTGSVQSQRPDSFGRFGRFGGKYVPETLIHALTELEAAFHSLASDEDFQKELA 60

Query: 119 GILKDYVGRESPLYFAERLTEHYKRPNGEGPHIYLKREDLNHTGAHKINNAVAQALLAKS 178
           G+LKDYVGRESPLYFAERLTEHYKR NGEGPH+YLKREDLNHTGAHKINNAVAQALLAK 
Sbjct: 61  GVLKDYVGRESPLYFAERLTEHYKRGNGEGPHVYLKREDLNHTGAHKINNAVAQALLAKK 120

Query: 179 LGKKRIIAETGAGQHGVATATVCARFGLECIIYMGAQDMERQALNVFRMRLLGAEVRPVH 238
           LGKKR+IAETGAGQHGVATATVCARFGLEC++YMGA DMERQALNVFRMRLLGAEVR VH
Sbjct: 121 LGKKRVIAETGAGQHGVATATVCARFGLECVVYMGALDMERQALNVFRMRLLGAEVRAVH 180

Query: 239 AGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVREFHAVIGKETRKQALEKW 298
           AGTATLKDATSEAIRDWVTNVETTHYILGSV GPHPYPMMVREFHAVIGKETRKQALEKW
Sbjct: 181 AGTATLKDATSEAIRDWVTNVETTHYILGSVCGPHPYPMMVREFHAVIGKETRKQALEKW 240

Query: 299 GGLPDVLIACVGGGSNAMGLFHEFVDDKDVRLIGVEAAGFGLDSGKHAATLTKGEVGVLH 358
           GG PD+L+ACVGGGSNA+GLFHEF+DDKDVRLIGVEA+G GL+SGKHAATLTKGEVGVLH
Sbjct: 241 GGKPDILVACVGGGSNAIGLFHEFIDDKDVRLIGVEASGLGLESGKHAATLTKGEVGVLH 300

Query: 359 GAMSYLLQDDDGQIVEPHSISAGLDYPGVGPEHSFLKDLGRAEYYSITDEEALEAFKRVS 418
           GAMSYLLQDDDGQI+EPHSISAGLDYPGVGPEHSFLKD GRAEYYS+TDEEALEAFKRVS
Sbjct: 301 GAMSYLLQDDDGQIIEPHSISAGLDYPGVGPEHSFLKDAGRAEYYSVTDEEALEAFKRVS 360

Query: 419 RLEGIIPALETSHALAYLEKVCPTLPNGTKVVLNFSGRGDKDVQTAIKYLKV 470
           +LEGIIPALETSHALAYLEK+CPTLPNGTKVV+N SGRGDKDVQTA+KYLK+
Sbjct: 361 QLEGIIPALETSHALAYLEKLCPTLPNGTKVVVNCSGRGDKDVQTAMKYLKI 412


>Medtr5g005670.1 | tryptophan synthase beta type 2 | HC |
           chr5:566635-569952 | 20130731
          Length = 466

 Score =  503 bits (1294), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 247/395 (62%), Positives = 312/395 (78%), Gaps = 5/395 (1%)

Query: 77  SFGRFGKFGGKYVPETLMHALTELEAAFHSLTADEDFQRELAGILKDYVGRESPLYFAER 136
           S G+FG+FGGK+VPETL+    +LEA F +   D+ FQ ELA  L+DYVGRE+PLY A+R
Sbjct: 75  SAGKFGRFGGKFVPETLVVCFNQLEAEFKNALHDDVFQAELATALRDYVGRETPLYHAQR 134

Query: 137 LTEHYKRPNG-EGPHIYLKREDLNHTGAHKINNAVAQALLAKSLGKKRIIAETGAGQHGV 195
           L+EHYK  NG +GP IYLKREDLNHTG+HK+NNA+AQA++AK +G K ++  TG+G HG+
Sbjct: 135 LSEHYKSKNGGKGPEIYLKREDLNHTGSHKMNNALAQAMIAKRIGLKSVVTATGSGHHGL 194

Query: 196 ATATVCARFGLECIIYMGAQDMERQALNVFRMRLLGAEVRPVHAGTATLKDATSEAIRDW 255
           ATA  CA+  LEC ++M A+DM+RQ+ NV  M+LLGA+V  V+      KDA+SEA R W
Sbjct: 195 ATAAACAKLALECTVFMAAKDMDRQSSNVRLMKLLGAKVEAVNG---CFKDASSEAFRCW 251

Query: 256 VTNVETTHYILGSVAGPHPYPMMVREFHAVIGKETRKQALEKWGGLPDVLIACVGGGSNA 315
           V ++E ++++ GS  GPHP P MVREF +VIGKETRKQA EKWGG PD+++A VG GSNA
Sbjct: 252 VGDLENSYHLSGSAVGPHPCPTMVREFQSVIGKETRKQAWEKWGGKPDIIVASVGTGSNA 311

Query: 316 MGLFHEFVDDKDVRLIGVEAAGFGLDSGKHAATLTKGEVGVLHGAMSYLLQDDDGQIVEP 375
           +G+FHEF+ D DVRLIGVEAAG GL+SGKH++TLTKGE+GV HGA+SYLLQD DGQI+EP
Sbjct: 312 LGMFHEFLSDTDVRLIGVEAAGLGLESGKHSSTLTKGEMGVYHGAISYLLQDGDGQIIEP 371

Query: 376 HSISAGLDYPGVGPEHSFLKDLGRAEYYSITDEEALEAFKRVSRLEGIIPALETSHALAY 435
           HSI+AG++YPGVGPE SFLK+ GRAE+   TDEEAL+A++R+ +LEGI P+LE +HALA 
Sbjct: 372 HSIAAGMEYPGVGPELSFLKESGRAEFCVATDEEALDAYERLCKLEGIFPSLEAAHALAI 431

Query: 436 LEKVCPTLPN-GTKVVLNFSGRGDKDVQTAIKYLK 469
           L+KV PTLPN   KVV+N SGRGDKD        K
Sbjct: 432 LDKVVPTLPNDNIKVVVNCSGRGDKDADIVFNCRK 466


>Medtr6g016665.1 | tryptophan synthase beta chain | HC |
           chr6:6372084-6376544 | 20130731
          Length = 501

 Score =  127 bits (319), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 117/371 (31%), Positives = 162/371 (43%), Gaps = 48/371 (12%)

Query: 127 RESPLYFAERLTEHYKRPNGEGPHIYLKREDLNHTGAHKINNAVAQALLAKSLGKKRIIA 186
           R +PL  A+RL +    P      IY K E ++  G+HK N+A+ QA      G K ++ 
Sbjct: 126 RPTPLIRAKRLEKLLDTPA----RIYYKYEGVSPAGSHKPNSAIPQAWYNLQEGVKNVVT 181

Query: 187 ETGAGQHGVATATVCARFGLECIIYMGAQDMERQALNVFRMRLLGAEVRP-----VHAGT 241
           ETGAGQ G A A  C+ FGL C ++      + +      M+  GA V P       AG 
Sbjct: 182 ETGAGQWGSALAFACSIFGLGCEVWQVRASYDSKPYRRLMMQTWGANVHPSPSMLTEAGQ 241

Query: 242 ATLKD----------ATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVREFHAVIGKETR 291
             L++          A SEA+     N + T Y LGSV         V    +VIG+E  
Sbjct: 242 RILQNDPTSPGSLGIAISEAVEIAAKNPD-TKYCLGSVLN------HVLLHQSVIGEECI 294

Query: 292 KQALEKWGGLPDVLIACVGGGSNAMGLFHEFVDDK-----DVRLIGVEAAGFGLDSGKHA 346
           KQ +E  G  PDV+I C GGGSN  GL   F+ +K     +  +  VE            
Sbjct: 295 KQ-MEAIGETPDVIIGCTGGGSNFAGLSFPFIREKLNNKINPVIRAVEPTA--------C 345

Query: 347 ATLTKG----EVGVLHGAMSYLLQDDDGQIVEPHSISA-GLDYPGVGPEHSFLKDLGRAE 401
            +LTKG    + G   G    +     G    P  I A GL Y G+ P  S + +LG  E
Sbjct: 346 PSLTKGIYTYDYGDTAGLTPLMKMHTLGHDFVPDPIHAGGLRYHGMAPLISHVYELGLME 405

Query: 402 YYSITDEEALEAFKRVSRLEGIIPALETSHALAYLEKV---CPTLPNGTKVVLNFSGRGD 458
             SI   E  +   + +R EG+IPA E +HA+A   +    C        ++    G G 
Sbjct: 406 AISIPQTECFQGAIQFARSEGLIPAPEPTHAIAATIREALHCRETGEAKVILTAMCGHGH 465

Query: 459 KDVQTAIKYLK 469
            D+    KYL+
Sbjct: 466 FDLPAYEKYLQ 476