Miyakogusa Predicted Gene

Lj6g3v0873250.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0873250.1 tr|G7IY17|G7IY17_MEDTR HAUS augmin-like complex
subunit OS=Medicago truncatula GN=MTR_3g052180 PE=4
,86.11,0,Q8GYM3_ARATH_Q8GYM3;,NULL; coiled-coil,NULL;
seg,NULL,NODE_31631_length_1368_cov_42.825291.path2.1
         (253 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g052180.1 | SKIP interacting protein | HC | chr3:20644366-...   320   6e-88
Medtr5g049170.1 | SKIP interacting protein | HC | chr5:21532826-...   311   5e-85
Medtr5g049150.1 | SKIP interacting protein | HC | chr5:21522185-...   197   6e-51

>Medtr3g052180.1 | SKIP interacting protein | HC |
           chr3:20644366-20637161 | 20130731
          Length = 424

 Score =  320 bits (821), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 165/253 (65%), Positives = 179/253 (70%), Gaps = 2/253 (0%)

Query: 1   MVEEYQQAISMSSLGGIRDTGGLYPQLGLRNSPQVYQTLEHQMVVAEAAQRLRLPLISKD 60
           MVEEY QAIS SS+GGIRDTGGLYPQ GLRNSPQVYQTLEHQM+VAEAAQRLRLP+ISKD
Sbjct: 68  MVEEYHQAISGSSIGGIRDTGGLYPQFGLRNSPQVYQTLEHQMIVAEAAQRLRLPMISKD 127

Query: 61  GEVHDEDIEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGANSSLAAMDPVEPG 120
           GEVHD++IEK                                   G N SLA+MDPVEPG
Sbjct: 128 GEVHDDEIEKLSVVSRSSLDSASTSGVVNSSINSFNYTTPSSSVSGVN-SLASMDPVEPG 186

Query: 121 VGGVPSRFLGITPSYLWQTQHQQTPLSVDMTEYRMSLSREVEARLKMKCDMLLEAFIL-X 179
           VGGVP+RFLGITP+YLWQTQ QQTPLSVDMTEYRMSL+REV+ RLK+KCD L +AF+L  
Sbjct: 187 VGGVPNRFLGITPAYLWQTQRQQTPLSVDMTEYRMSLAREVDGRLKLKCDKLSDAFVLDD 246

Query: 180 XXXXXXXXXXXXXRLPERVKLXXXXXXXXXXXXXXXLYSADRKFAEYYNVLEQILGVLIK 239
                        RLPERVKL               LYSADRKFAEYYNVLEQILGVLIK
Sbjct: 247 NDSFSSGSQSSSSRLPERVKLLIEDIEREEAALRDDLYSADRKFAEYYNVLEQILGVLIK 306

Query: 240 LVKDLKLEHQHKY 252
           LVKDLKL+HQHKY
Sbjct: 307 LVKDLKLDHQHKY 319


>Medtr5g049170.1 | SKIP interacting protein | HC |
           chr5:21532826-21539610 | 20130731
          Length = 424

 Score =  311 bits (796), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 160/253 (63%), Positives = 177/253 (69%), Gaps = 2/253 (0%)

Query: 1   MVEEYQQAISMSSLGGIRDTGGLYPQLGLRNSPQVYQTLEHQMVVAEAAQRLRLPLISKD 60
           MVEEY  AIS SS+GGIRDTGGLYPQ G+RNSPQVYQTLEHQM+VAEAAQ+LRLPLIS+D
Sbjct: 68  MVEEYHHAISGSSIGGIRDTGGLYPQFGIRNSPQVYQTLEHQMIVAEAAQQLRLPLISED 127

Query: 61  GEVHDEDIEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGANSSLAAMDPVEPG 120
           GEVHD++IEK                                   G N SLA+MDPVEPG
Sbjct: 128 GEVHDDEIEKLSVASRSSLDSASTSGVVNSSINSSNYTTPSSSVSGVN-SLASMDPVEPG 186

Query: 121 VGGVPSRFLGITPSYLWQTQHQQTPLSVDMTEYRMSLSREVEARLKMKCDMLLEAFIL-X 179
           VGGVP+RFLGITP+YLWQTQ QQTPLSVD+TEYRMSL+REV+ RLK+KCD L +AF+L  
Sbjct: 187 VGGVPNRFLGITPAYLWQTQRQQTPLSVDITEYRMSLAREVDGRLKLKCDKLSDAFVLDD 246

Query: 180 XXXXXXXXXXXXXRLPERVKLXXXXXXXXXXXXXXXLYSADRKFAEYYNVLEQILGVLIK 239
                        RLPERVKL               LYSADRKFAEYYNVLEQILGVLIK
Sbjct: 247 NDSFSSGSQSSSSRLPERVKLLIEDIEREEAALRDDLYSADRKFAEYYNVLEQILGVLIK 306

Query: 240 LVKDLKLEHQHKY 252
           LVKDLKL+ QHKY
Sbjct: 307 LVKDLKLDCQHKY 319


>Medtr5g049150.1 | SKIP interacting protein | HC |
           chr5:21522185-21526518 | 20130731
          Length = 223

 Score =  197 bits (502), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 97/150 (64%), Positives = 109/150 (72%), Gaps = 1/150 (0%)

Query: 1   MVEEYQQAISMSSLGGIRDTGGLYPQLGLRNSPQVYQTLEHQMVVAEAAQRLRLPLISKD 60
           MVEEY QAIS SS+GGIRDTGGLYPQ G+RNSPQVYQTLEHQM+VAEAAQ+LRLPLIS+D
Sbjct: 68  MVEEYHQAISGSSIGGIRDTGGLYPQFGIRNSPQVYQTLEHQMIVAEAAQQLRLPLISED 127

Query: 61  GEVHDEDIEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGANSSLAAMDPVEPG 120
           GEVHD++IEK                                   G N SLA+MDPVEPG
Sbjct: 128 GEVHDDEIEKLSVASRSSLDSASTSGVVNSSINSYNYTTPSSSVSGVN-SLASMDPVEPG 186

Query: 121 VGGVPSRFLGITPSYLWQTQHQQTPLSVDM 150
           VGGVP+RFLGITP+YLWQTQ QQTPLSV++
Sbjct: 187 VGGVPNRFLGITPAYLWQTQRQQTPLSVNI 216