Miyakogusa Predicted Gene

Lj6g3v0872240.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0872240.2 Non Characterized Hit- tr|Q4W8V2|Q4W8V2_MOUSE
Putative uncharacterized protein OS=Mus musculus
GN=St,29.11,1e-18,Helical region found in SNAREs,Target SNARE
coiled-coil domain; seg,NULL; t-snare proteins,t-SNARE; ,CUFF.58421.2
         (245 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g092870.1 | syntaxin protein | HC | chr5:40554762-40550176...   331   3e-91
Medtr3g052210.1 | syntaxin protein | HC | chr3:20656015-20651601...   326   1e-89

>Medtr5g092870.1 | syntaxin protein | HC | chr5:40554762-40550176 |
           20130731
          Length = 258

 Score =  331 bits (849), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 163/226 (72%), Positives = 188/226 (83%), Gaps = 2/226 (0%)

Query: 1   MPSAQDPFYVVKAEIQESIDKLQSVFRQWERAPDAVERGHLTKEVLAGCGSIEWQVDELD 60
           MPSAQDPFYVVK +IQ+SID+LQS F QWE   D  E  +L+KEVLA CGSIEWQVDELD
Sbjct: 1   MPSAQDPFYVVKEDIQDSIDRLQSNFHQWENTSDTGEHLNLSKEVLAACGSIEWQVDELD 60

Query: 61  KAIAVASKEPSWYGIGEVEIENRRRWTSSARTQVGAVKKTVEGGKGSSTTSHQSVRGMHQ 120
           KAI+VAS++PSWYGI EVEIENRRRWTS+ARTQV  +K+TVE GKGS+ T+H S+ GMH+
Sbjct: 61  KAISVASRDPSWYGIDEVEIENRRRWTSNARTQVRTIKRTVEAGKGSNPTTHASISGMHR 120

Query: 121 ELMRLPNSHQ-TNTSNHYAAED-DDFIQSESDRQMLLIKRQDEELDELSSSVQRIGGVGL 178
           ELMRLP+SHQ T+ SN YA+ D DDFI+SESDRQMLLIK+QDEELDELS SVQRIGGVGL
Sbjct: 121 ELMRLPDSHQSTSKSNQYASGDNDDFIESESDRQMLLIKQQDEELDELSLSVQRIGGVGL 180

Query: 179 TIHDELIAQERIVDELGNEMDSTTNRLDFVQXXXXXXXXXXXXXGQ 224
           TIH+EL+ QE+I+DELGNEMDST+NRLDFVQ             GQ
Sbjct: 181 TIHEELLGQEKILDELGNEMDSTSNRLDFVQKRVAMVMKKASAKGQ 226


>Medtr3g052210.1 | syntaxin protein | HC | chr3:20656015-20651601 |
           20130731
          Length = 243

 Score =  326 bits (835), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 160/225 (71%), Positives = 183/225 (81%), Gaps = 4/225 (1%)

Query: 1   MPSAQDPFYVVKAEIQESIDKLQSVFRQWERAPDAVERGHLTKEVLAGCGSIEWQVDELD 60
           MPSAQDPFYVVK+EIQESID L S F QW+   D+ E+  +TKEVL+GC SIEWQVDEL+
Sbjct: 1   MPSAQDPFYVVKSEIQESIDNLHSTFEQWKHTSDSAEKVRVTKEVLSGCESIEWQVDELE 60

Query: 61  KAIAVASKEPSWYGIGEVEIENRRRWTSSARTQVGAVKKTVEGGKGSSTTSHQSVRGMHQ 120
           KAIAVA++EPSWYGI + EIENRRRWTSSARTQVG +KKTV+ GK SSTT   S+ GMH+
Sbjct: 61  KAIAVAAREPSWYGIDDAEIENRRRWTSSARTQVGTMKKTVDAGKSSSTT---SINGMHR 117

Query: 121 ELMRLPNSHQTNTSNHYAAED-DDFIQSESDRQMLLIKRQDEELDELSSSVQRIGGVGLT 179
           ELMRLP+S+Q   SN  AA D DDFIQSESDRQ LLIK+QDEELDELS SVQRIGGVGLT
Sbjct: 118 ELMRLPDSYQPYASNQNAANDNDDFIQSESDRQTLLIKQQDEELDELSLSVQRIGGVGLT 177

Query: 180 IHDELIAQERIVDELGNEMDSTTNRLDFVQXXXXXXXXXXXXXGQ 224
           IH+EL++QE+I+DELGNEMDST+NRLDFVQ             GQ
Sbjct: 178 IHEELLSQEKIIDELGNEMDSTSNRLDFVQKKVAMVMKKASAKGQ 222