Miyakogusa Predicted Gene

Lj6g3v0871220.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0871220.1 CUFF.58420.1
         (108 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g052260.1 | NADH:ubiquinone oxidoreductase 17.2 kDa subuni...   112   9e-26

>Medtr3g052260.1 | NADH:ubiquinone oxidoreductase 17.2 kDa subunit |
           HC | chr3:20691893-20685998 | 20130731
          Length = 183

 Score =  112 bits (280), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 65/108 (60%), Positives = 74/108 (68%), Gaps = 2/108 (1%)

Query: 2   MELEARREQVRQNVALLXXXXXXXXXXXGSTGKRV-STGKVSGPDLKSFVQQLRDPSEGV 60
           MEL+ARREQV+QNVALL           GS  +RV + G V GPDLKSF+QQ    SEG 
Sbjct: 77  MELDARREQVKQNVALLKKEEEERKAKEGSRVRRVVNKGNVGGPDLKSFMQQFPVSSEGN 136

Query: 61  KVEESSGAMDGLRDSQDNAGEKEKVELESSEPTGSGPSFRPGTWQPPT 108
           +VEES G  D LR SQD+    E  ELE+SEPTGSG SF+PGTWQPPT
Sbjct: 137 EVEESPGTRDDLRKSQDSKDNAED-ELETSEPTGSGASFKPGTWQPPT 183