Miyakogusa Predicted Gene

Lj6g3v0870190.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0870190.1 tr|G7IY23|G7IY23_MEDTR ATP synthase gamma chain
OS=Medicago truncatula GN=MTR_3g052270 PE=3 SV=1,79.08,0,no
description,NULL; ATP-synt,ATPase, F1 complex, gamma subunit;
seg,NULL; ATPsyn_F1gamma: ATP synth,CUFF.58416.1
         (306 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g052270.1 | F0F1 ATP synthase subunit gamma | HC | chr3:20...   441   e-124
Medtr2g023290.1 | F0F1 ATP synthase subunit gamma | HC | chr2:81...   391   e-109
Medtr4g129790.1 | F0F1 ATP synthase subunit gamma | HC | chr4:54...    74   1e-13

>Medtr3g052270.1 | F0F1 ATP synthase subunit gamma | HC |
           chr3:20693059-20694590 | 20130731
          Length = 351

 Score =  441 bits (1134), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 220/306 (71%), Positives = 249/306 (81%), Gaps = 1/306 (0%)

Query: 1   MKLXXXXXXXXXXXXXXNGRPFSETLAEMLHDINDRVRDDDVEVTLCNXXXXXXXXXXXX 60
           MKL              N RPFSE  AE LH IN  +++DDV V L              
Sbjct: 47  MKLVAAARVRRAQEAVINSRPFSEAFAETLHSINQSLQNDDVVVPLTAVRPVKTVALIVI 106

Query: 61  TGDRGLCGGFNNAVVKKAQTRIEELRKLGLDCVVISVGKKGNSFFSRRDFVEVDRFVDNG 120
           TGDRGLCGGFNN+V KKA+ R+ EL+ LG++CVVISVGKKG+S+F+R  FVEVDRF+DN 
Sbjct: 107 TGDRGLCGGFNNSVAKKAEARVMELKNLGINCVVISVGKKGSSYFNRSGFVEVDRFIDNV 166

Query: 121 GFPTTKDAQTIADDVFSLFVSEEVDKVELVFTKFVSLVKFDPVIQTLLPLSRKGEVCDVN 180
           GFPTTKDAQ IADDVFSLFV+EEVDKVELV+TKFVSLV+F+PVIQTLLPLS+KGEV DVN
Sbjct: 167 GFPTTKDAQIIADDVFSLFVTEEVDKVELVYTKFVSLVRFNPVIQTLLPLSKKGEVFDVN 226

Query: 181 GNSVDAIDDEYFRLTSKDGKLALERGVVGMEKKSDGCVPIMEFEQDPVQILDAMMPLYLN 240
           GNSVD ++DE+FRLTSKDGKLAL+R V   +K  DG VP+MEFEQDP QILDAMMPLYLN
Sbjct: 227 GNSVDVLEDEFFRLTSKDGKLALKRDVK-KKKMKDGFVPVMEFEQDPAQILDAMMPLYLN 285

Query: 241 SQILRSLQESLASELAARMGAMSNATDNAIELTKNLSVAYNRERQAKITGELLEIVAGAE 300
           SQ+L++LQESLASELAARMGAMSNATDNA+ELTK LSVAYNRERQAKITGE+LEIVAGAE
Sbjct: 286 SQVLKALQESLASELAARMGAMSNATDNAVELTKELSVAYNRERQAKITGEILEIVAGAE 345

Query: 301 ALTPID 306
           AL PID
Sbjct: 346 ALRPID 351


>Medtr2g023290.1 | F0F1 ATP synthase subunit gamma | HC |
            chr2:8196994-8205127 | 20130731
          Length = 1021

 Score =  391 bits (1005), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/285 (67%), Positives = 230/285 (80%), Gaps = 2/285 (0%)

Query: 18   NGRPFSETLAEMLHDINDRVRDDDVEVTLCNXXXXXXXXXXXXTGDRGLCGGFNNAVVKK 77
            NGR FS TL E+L+ IN++++ DD+E  L              TGDRGLCGGFNNA++KK
Sbjct: 738  NGRSFSHTLVEVLYSINEQLQTDDIEAPLTKLRPVKKVALVVCTGDRGLCGGFNNAILKK 797

Query: 78   AQTRIEELRKLGLDCVVISVGKKGNSFFSRRDFVEVDRFVDNGGFPTTKDAQTIADDVFS 137
            A+ RI EL+ LGLD  +ISVG+KGNS+F RR ++ VDRF++ G  PT K+AQTIADDVFS
Sbjct: 798  AEKRIAELKGLGLDYTIISVGRKGNSYFLRRPYIPVDRFLEGGNLPTAKEAQTIADDVFS 857

Query: 138  LFVSEEVDKVELVFTKFVSLVKFDPVIQTLLPLSRKGEVCDVNGNSVDAIDDEYFRLTSK 197
            LFVSEEVDKVEL++TKFVSLVK +P+I TLLPLS KGE+CD+NGN VDA +DE FRLT+K
Sbjct: 858  LFVSEEVDKVELLYTKFVSLVKSEPIIHTLLPLSPKGEICDINGNCVDAAEDELFRLTTK 917

Query: 198  DGKLALERGVVGMEKKSDGCVPIMEFEQDPVQILDAMMPLYLNSQILRSLQESLASELAA 257
            +GKL +ER  V    K+    PI++FEQDPVQILDA++PLYLNSQILR+LQESLASELAA
Sbjct: 918  EGKLTVERDAV--RSKTIDFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELAA 975

Query: 258  RMGAMSNATDNAIELTKNLSVAYNRERQAKITGELLEIVAGAEAL 302
            RM AMS+A DNAIEL KNLS  YNR+RQAKITGE+LEIVAGA+AL
Sbjct: 976  RMTAMSSACDNAIELKKNLSRVYNRQRQAKITGEILEIVAGADAL 1020


>Medtr4g129790.1 | F0F1 ATP synthase subunit gamma | HC |
           chr4:54097375-54102498 | 20130731
          Length = 327

 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 116/253 (45%), Gaps = 51/253 (20%)

Query: 61  TGDRGLCGGFNNAVVKKAQTRIEELRKLGL----DCVVISVGKKGNSFF---SRRDFVEV 113
           + D+GLCGG N+  VK ++     L KL      +   + +G+K  +     S++D    
Sbjct: 115 SSDKGLCGGINSTSVKISRA----LSKLNSGPDKETKYVILGEKAKAQLIRDSKKDIALS 170

Query: 114 DRFVDNGGFPTTKDAQTIADDVFSLFVSEEVDKVELVFTKFVSLVKFDPVIQTLLP---L 170
              +       T+    +ADD+     + E D + +VF +F S+V+F P + T+L    +
Sbjct: 171 LTEIQKNPLNYTQ-VSVLADDILK---NVEYDALRIVFNRFQSVVQFLPTVSTILSPEIV 226

Query: 171 SRKGEVCDVNGNSVDAIDDEYFRLTSKDGKLALERGVVGMEKKSDGCVPIMEFEQDPVQI 230
            R+ E     G S+  +D                    G + KS+    + EF+   V  
Sbjct: 227 EREAEA----GGSLGELDSYEIE---------------GGDTKSEILQNLTEFQFSCV-- 265

Query: 231 LDAMMPLYLNSQILRSLQESLASELAARMGAMSNATDNAIELTKNLSVAYNRERQAKITG 290
                       +  ++ E+  SE  ARM AM +++ NA ++   L++ YNR RQA IT 
Sbjct: 266 ------------MFNAVLENACSEQGARMSAMDSSSRNAGDMLDRLTLTYNRTRQASITT 313

Query: 291 ELLEIVAGAEALT 303
           EL+EI++GA ALT
Sbjct: 314 ELIEIISGASALT 326