Miyakogusa Predicted Gene

Lj6g3v0856590.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0856590.1 tr|A9RTR3|A9RTR3_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_70439
,47.27,0.0000002,E set domains,Immunoglobulin E-set; CBM_48,Glycoside
hydrolase, family 13, N-terminal; 1,4-ALPHA-GLU,CUFF.58399.1
         (226 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g053220.1 | 1,4-alpha-glucan-branching enzyme/amyloplastic...   409   e-114
Medtr7g104080.3 | starch branching enzyme I | HC | chr7:42120931...    51   1e-06
Medtr7g104080.2 | starch branching enzyme I | HC | chr7:42120617...    51   1e-06
Medtr7g104080.1 | starch branching enzyme I | HC | chr7:42120840...    51   1e-06

>Medtr3g053220.1 | 1,4-alpha-glucan-branching enzyme/amyloplastic
           protein | HC | chr3:21141021-21130771 | 20130731
          Length = 918

 Score =  409 bits (1050), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 185/214 (86%), Positives = 200/214 (93%)

Query: 1   MNLKEMASGFELLGMHRHPEHRVDYMEWAPGARYCAIIGDINGWSPTENCAREHYFGHDD 60
           MN KEMASGFELLGMHRHPEHRVDYMEWAPGARYCAI  D NGWSPTENCAREHYFGHDD
Sbjct: 121 MNFKEMASGFELLGMHRHPEHRVDYMEWAPGARYCAITADFNGWSPTENCAREHYFGHDD 180

Query: 61  FGYWFIILQDKLREGEKPDKLYFQQYNYVDDYDKGDSGVTIEEIFKKMNDKYWQPGEDRY 120
           +GYWFI+L+DKLREGE+ D+LYFQQYNYVDDYDKGDSGVT+EE+FKK ND+YWQPGEDRY
Sbjct: 181 YGYWFIVLEDKLREGEEADELYFQQYNYVDDYDKGDSGVTVEELFKKANDEYWQPGEDRY 240

Query: 121 LKNRFEGPVKLYEEIFGPNGPQTLEELGDIPDAETRYKEWAAKHGPSRYAVIDSGKEYDV 180
           LKN FE P KLYE++FGPNGPQT+EELGDIPDAETRYKEWAAK+GPS YAVID GK YD+
Sbjct: 241 LKNHFEVPAKLYEQMFGPNGPQTMEELGDIPDAETRYKEWAAKNGPSPYAVIDDGKNYDI 300

Query: 181 FNVRVDPGWHERVRALEPPIAYWLETRKGRKAWL 214
           FNV+VDP W ER+RALEPPIAYWLETRKGRKAWL
Sbjct: 301 FNVKVDPEWQERIRALEPPIAYWLETRKGRKAWL 334


>Medtr7g104080.3 | starch branching enzyme I | HC |
           chr7:42120931-42098239 | 20130731
          Length = 722

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 6/66 (9%)

Query: 3   LKEMASGFELLGMHRHPEHRVDYMEWAPGARYCAIIGDINGWSPTENCAREHYFGHDDFG 62
           L   + G+E LG  R     + Y EWAPGA+  A++GD N W+P  +         DDFG
Sbjct: 208 LDAFSRGYEKLGFTRSAT-GITYREWAPGAKSAALVGDFNNWNPNADV-----MTRDDFG 261

Query: 63  YWFIIL 68
            W I L
Sbjct: 262 VWEIFL 267


>Medtr7g104080.2 | starch branching enzyme I | HC |
           chr7:42120617-42096216 | 20130731
          Length = 874

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 6/66 (9%)

Query: 3   LKEMASGFELLGMHRHPEHRVDYMEWAPGARYCAIIGDINGWSPTENCAREHYFGHDDFG 62
           L   + G+E LG  R     + Y EWAPGA+  A++GD N W+P  +         DDFG
Sbjct: 205 LDAFSRGYEKLGFTRSAT-GITYREWAPGAKSAALVGDFNNWNPNADV-----MTRDDFG 258

Query: 63  YWFIIL 68
            W I L
Sbjct: 259 VWEIFL 264


>Medtr7g104080.1 | starch branching enzyme I | HC |
           chr7:42120840-42096216 | 20130731
          Length = 877

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 6/66 (9%)

Query: 3   LKEMASGFELLGMHRHPEHRVDYMEWAPGARYCAIIGDINGWSPTENCAREHYFGHDDFG 62
           L   + G+E LG  R     + Y EWAPGA+  A++GD N W+P  +         DDFG
Sbjct: 208 LDAFSRGYEKLGFTRSAT-GITYREWAPGAKSAALVGDFNNWNPNADV-----MTRDDFG 261

Query: 63  YWFIIL 68
            W I L
Sbjct: 262 VWEIFL 267