Miyakogusa Predicted Gene

Lj6g3v0831440.2
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0831440.2 Non Characterized Hit- tr|I3MIC5|I3MIC5_SPETR
Uncharacterized protein (Fragment) OS=Spermophilus
tri,33.04,2e-18,ZF_C3H1,Zinc finger, CCCH-type; G_PATCH,G-patch
domain; G-patch,G-patch domain; seg,NULL; coiled-coi,CUFF.58390.2
         (495 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g053700.1 | zinc finger CCCH-type with G patch domain prot...   706   0.0  

>Medtr3g053700.1 | zinc finger CCCH-type with G patch domain protein
           | HC | chr3:21366860-21373557 | 20130731
          Length = 493

 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/469 (73%), Positives = 387/469 (82%), Gaps = 1/469 (0%)

Query: 27  AIDEALLSDPTNSELVAVHEELVQAIKDAEEGLLHLKRARLLQEVDSVLHNTNMFTEEEK 86
           AID ALL DPTNSEL+ VHEELVQAIKDAEEGLLHLKRARLL E D+VL +T++F EEEK
Sbjct: 26  AIDHALLLDPTNSELLEVHEELVQAIKDAEEGLLHLKRARLLSEADTVLCSTDIFAEEEK 85

Query: 87  VEPLDPTDVEPEPLEEKSYSIGSKCRFRHKDGRWYNGQVVQLDNSVAKISFLTPTSENML 146
           VEPLDP DVEPEPLEEKS+S+GSKCRFR+KDGRWYNGQV+QLDNSVAKISFLTPTSENML
Sbjct: 86  VEPLDPADVEPEPLEEKSFSVGSKCRFRYKDGRWYNGQVMQLDNSVAKISFLTPTSENML 145

Query: 147 MCKFFLQHRCRFGANCRQSHGVDVQLSSLKRYVPTIWKPSLVGSSIWALSDAKTGIWREA 206
           MCKFFLQ RCRFG+NCR SHGVDVQL+SLK Y PTIWKPSL GSSIWA+S+A  GIWR A
Sbjct: 146 MCKFFLQQRCRFGSNCRLSHGVDVQLTSLKEYAPTIWKPSLAGSSIWAVSNANAGIWRAA 205

Query: 207 ELELWDEKAGVGQVVFRDSGSSMKLCAEEIVLSEYAEVXXXXXXXXXXXXXXXXXXXXXX 266
           ELE WDEKAGVGQVVFRD GSS+KL A+++VLSEYA++                      
Sbjct: 206 ELESWDEKAGVGQVVFRDDGSSVKLGAQDMVLSEYADMSDIDSDSSLEQSDYSGSEEEEP 265

Query: 267 XGLGFLESTNLQKGIQTDTALFAKWENHTRGIASKMMANMGFREGMGLGVTGQGMLDPIP 326
            GLGF++STNLQKG+QT+TA+FAKWENHTRG+ASKMMANMG++EGMGLG+TGQGM+DPIP
Sbjct: 266 QGLGFMDSTNLQKGVQTETAIFAKWENHTRGMASKMMANMGYQEGMGLGLTGQGMVDPIP 325

Query: 327 VKVLPPKQSLDHALDSRXXXXXXXXXXXXXXXXXXXXXXXXFAEANRTAKEEEESAPDVF 386
           VKVLPPKQSLDHAL S                         FAEA R AKEEEESAPDVF
Sbjct: 326 VKVLPPKQSLDHALKSHKVEGNTEKQRKKRTRGGKRKREKRFAEAIRAAKEEEESAPDVF 385

Query: 387 TLINNQLAMHGEASNGGSMKKQQSKDSGEVKKVDRKVLVAYEDEVKGLKMRVAKLEQMVN 446
           +LIN QLAMHGEASN GSMKKQQSK SGE KKVDRK+LVAYE++VK LK++V K EQM  
Sbjct: 386 SLINTQLAMHGEASN-GSMKKQQSKGSGEGKKVDRKMLVAYENDVKDLKVQVLKFEQMAE 444

Query: 447 ANKKEKAVYEAAMRKLVETRKALAEAESVHASASNTVVGKEKEKRWLKF 495
           ANK+EK VY+AAM+KLV+TRKALAEAE+VHASAS+ VV KEK+KRWLKF
Sbjct: 445 ANKREKPVYDAAMKKLVQTRKALAEAEAVHASASDDVVSKEKDKRWLKF 493