Miyakogusa Predicted Gene

Lj6g3v0831440.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0831440.1 Non Characterized Hit- tr|J9JZ62|J9JZ62_ACYPI
Uncharacterized protein OS=Acyrthosiphon pisum PE=4
SV,30.6,0.00000000000001,G_PATCH,G-patch domain; G-patch,G-patch
domain; seg,NULL; coiled-coil,NULL; ZINC FINGER CCCH-TYPE
WI,CUFF.58390.1
         (267 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g053700.1 | zinc finger CCCH-type with G patch domain prot...   338   2e-93
Medtr4g116570.1 | D111/G-patch domain protein | HC | chr4:483194...    51   1e-06
Medtr4g116570.2 | D111/G-patch domain protein | HC | chr4:483195...    51   1e-06

>Medtr3g053700.1 | zinc finger CCCH-type with G patch domain protein
           | HC | chr3:21366860-21373557 | 20130731
          Length = 493

 Score =  338 bits (868), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 174/267 (65%), Positives = 203/267 (76%), Gaps = 1/267 (0%)

Query: 1   MKLCAEEIVLSEYAEVXXXXXXXXXXXXXXXXXXXXXXXGLGFLESTNLQKGIQTDTALF 60
           +KL A+++VLSEYA++                       GLGF++STNLQKG+QT+TA+F
Sbjct: 228 VKLGAQDMVLSEYADMSDIDSDSSLEQSDYSGSEEEEPQGLGFMDSTNLQKGVQTETAIF 287

Query: 61  AKWENHTRGIASKMMANMGFREGMGLGVTGQGMLDPIPVKVLPPKQSLDHALDSRXXXXX 120
           AKWENHTRG+ASKMMANMG++EGMGLG+TGQGM+DPIPVKVLPPKQSLDHAL S      
Sbjct: 288 AKWENHTRGMASKMMANMGYQEGMGLGLTGQGMVDPIPVKVLPPKQSLDHALKSHKVEGN 347

Query: 121 XXXXXXXXXXXXXXXXXXXFAEANRTAKEEEESAPDVFTLINNQLAMHGEASNGGSMKKQ 180
                              FAEA R AKEEEESAPDVF+LIN QLAMHGEASNG SMKKQ
Sbjct: 348 TEKQRKKRTRGGKRKREKRFAEAIRAAKEEEESAPDVFSLINTQLAMHGEASNG-SMKKQ 406

Query: 181 QSKDSGEVKKVDRKVLVAYEDEVKGLKMRVAKLEQMVNANKKEKAVYEAAMRKLVETRKA 240
           QSK SGE KKVDRK+LVAYE++VK LK++V K EQM  ANK+EK VY+AAM+KLV+TRKA
Sbjct: 407 QSKGSGEGKKVDRKMLVAYENDVKDLKVQVLKFEQMAEANKREKPVYDAAMKKLVQTRKA 466

Query: 241 LAEAESVHASASNTVVGKEKEKRWLKF 267
           LAEAE+VHASAS+ VV KEK+KRWLKF
Sbjct: 467 LAEAEAVHASASDDVVSKEKDKRWLKF 493


>Medtr4g116570.1 | D111/G-patch domain protein | HC |
           chr4:48319492-48325883 | 20130731
          Length = 798

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 31/54 (57%)

Query: 55  TDTALFAKWENHTRGIASKMMANMGFREGMGLGVTGQGMLDPIPVKVLPPKQSL 108
           + T+    +E HT+G  SKMMA MGF EG GLG   QG+  P+    LP  + L
Sbjct: 741 SSTSGIGSFEKHTKGFGSKMMAKMGFVEGSGLGRESQGITAPLGAVRLPKSRGL 794


>Medtr4g116570.2 | D111/G-patch domain protein | HC |
           chr4:48319548-48326239 | 20130731
          Length = 783

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 31/54 (57%)

Query: 55  TDTALFAKWENHTRGIASKMMANMGFREGMGLGVTGQGMLDPIPVKVLPPKQSL 108
           + T+    +E HT+G  SKMMA MGF EG GLG   QG+  P+    LP  + L
Sbjct: 726 SSTSGIGSFEKHTKGFGSKMMAKMGFVEGSGLGRESQGITAPLGAVRLPKSRGL 779