Miyakogusa Predicted Gene

Lj6g3v0820200.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0820200.1 Non Characterized Hit- tr|C6TJB4|C6TJB4_SOYBN
Putative uncharacterized protein OS=Glycine max PE=4
S,93.88,2e-18,SWIB,SWIB/MDM2 domain; SUBFAMILY NOT NAMED,NULL; BRG-1
ASSOCIATED FACTOR 60 (BAF60),NULL; SWIB/MDM2 ,CUFF.58365.1
         (100 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g054150.1 | SWIB/MDM2 domain protein | HC | chr3:21478240-...   116   4e-27
Medtr3g054160.1 | SWIB/MDM2 domain protein | HC | chr3:21480241-...    82   9e-17
Medtr5g025500.1 | SWIB/MDM2 domain protein | HC | chr5:10358957-...    76   7e-15
Medtr5g005200.1 | SWIB/MDM2 domain protein | HC | chr5:242485-24...    70   3e-13
Medtr5g018010.1 | upstream activation factor subunit UAF30, puta...    58   2e-09
Medtr5g018010.3 | upstream activation factor subunit UAF30, puta...    57   4e-09
Medtr5g018010.2 | upstream activation factor subunit UAF30, puta...    57   4e-09
Medtr3g055330.1 | SWIB/MDM2 domain protein | HC | chr3:21756054-...    46   9e-06
Medtr3g055330.2 | SWIB/MDM2 domain protein | HC | chr3:21756054-...    46   1e-05

>Medtr3g054150.1 | SWIB/MDM2 domain protein | HC |
          chr3:21478240-21479690 | 20130731
          Length = 161

 Score =  116 bits (291), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 55/58 (94%), Positives = 56/58 (96%)

Query: 1  MLPQRMKKAITDNPKKLANLIDLVNLPSTLRDFVGQSQISRLGCFMRVWSYIKTNNLQ 58
          MLPQRMKKA+TDNPKKLANLIDLVNLPSTLRDFVGQSQ SRL CFMRVWSYIKTNNLQ
Sbjct: 1  MLPQRMKKAVTDNPKKLANLIDLVNLPSTLRDFVGQSQTSRLSCFMRVWSYIKTNNLQ 58


>Medtr3g054160.1 | SWIB/MDM2 domain protein | HC |
           chr3:21480241-21480566 | 20130731
          Length = 76

 Score = 82.4 bits (202), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 41/43 (95%)

Query: 58  QDPNNKNVVNCDEKLKSILLGKPQVELAELPSLIKLHFPKESK 100
           QDPNNKNVVNCDEKLK ILLGKPQV+LAELP+LIKLHFPKE K
Sbjct: 34  QDPNNKNVVNCDEKLKGILLGKPQVDLAELPALIKLHFPKEPK 76


>Medtr5g025500.1 | SWIB/MDM2 domain protein | HC |
           chr5:10358957-10357050 | 20130731
          Length = 134

 Score = 75.9 bits (185), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 55/94 (58%), Gaps = 2/94 (2%)

Query: 6   MKKAITDNPKKLANLIDLVNLPSTLRDFVGQSQISRLGCFMRVWSYIKTNNLQDPNNKNV 65
           +KK +T   K    +  +V + S L +F+G  ++SR     +VW YIK  NLQ+PNNK  
Sbjct: 43  VKKTVTS--KSTGGIQKVVQVTSELGNFIGAPEVSRTEAVKKVWEYIKLQNLQNPNNKKE 100

Query: 66  VNCDEKLKSILLGKPQVELAELPSLIKLHFPKES 99
           + CD+KLK+I  GK +V   E+  L+  HF K +
Sbjct: 101 IFCDDKLKTIFDGKDKVVFTEIAKLLATHFVKST 134


>Medtr5g005200.1 | SWIB/MDM2 domain protein | HC |
           chr5:242485-244145 | 20130731
          Length = 143

 Score = 70.5 bits (171), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 44/66 (66%)

Query: 30  LRDFVGQSQISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDEKLKSILLGKPQVELAELPS 89
           ++D VGQ +ISR      +W++IK +NLQ+P  K ++ CDEKLK +  G+ +V++ E+  
Sbjct: 76  MQDLVGQPEISRTQALKSIWAHIKEHNLQNPEKKRLIRCDEKLKKVFAGRDEVDMLEIAG 135

Query: 90  LIKLHF 95
           LI  HF
Sbjct: 136 LISPHF 141


>Medtr5g018010.1 | upstream activation factor subunit UAF30,
           putative | HC | chr5:6695520-6691091 | 20130731
          Length = 344

 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 35/53 (66%)

Query: 24  VNLPSTLRDFVGQSQISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDEKLKSIL 76
           + L   L  F+G+S++SR     R+W YIK NNLQDP++K  + CDEKLK + 
Sbjct: 269 LQLSDALAKFLGESELSRSDVIKRMWDYIKGNNLQDPSDKRQILCDEKLKELF 321



 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 23  LVNLPSTLRDFVGQSQISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDEKLKSILLGKPQV 82
           + +L   L++FVG  +++R     ++W+YI+  +LQDPNN+  + CDE L++ L G   +
Sbjct: 135 ICSLSPQLQEFVGAPEMARTEVVKQLWAYIREKDLQDPNNRRNIICDEPLRA-LFGVDTI 193

Query: 83  ELAELPSLIKLH 94
            + ++  ++  H
Sbjct: 194 NMFQMNKVLAKH 205


>Medtr5g018010.3 | upstream activation factor subunit UAF30,
           putative | HC | chr5:6695520-6691109 | 20130731
          Length = 267

 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 35/53 (66%)

Query: 24  VNLPSTLRDFVGQSQISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDEKLKSIL 76
           + L   L  F+G+S++SR     R+W YIK NNLQDP++K  + CDEKLK + 
Sbjct: 192 LQLSDALAKFLGESELSRSDVIKRMWDYIKGNNLQDPSDKRQILCDEKLKELF 244



 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 23  LVNLPSTLRDFVGQSQISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDEKLKSILLGKPQV 82
           + +L   L++FVG  +++R     ++W+YI+  +LQDPNN+  + CDE L++ L G   +
Sbjct: 58  ICSLSPQLQEFVGAPEMARTEVVKQLWAYIREKDLQDPNNRRNIICDEPLRA-LFGVDTI 116

Query: 83  ELAELPSLIKLH 94
            + ++  ++  H
Sbjct: 117 NMFQMNKVLAKH 128


>Medtr5g018010.2 | upstream activation factor subunit UAF30,
           putative | HC | chr5:6695520-6691109 | 20130731
          Length = 267

 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 35/53 (66%)

Query: 24  VNLPSTLRDFVGQSQISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDEKLKSIL 76
           + L   L  F+G+S++SR     R+W YIK NNLQDP++K  + CDEKLK + 
Sbjct: 192 LQLSDALAKFLGESELSRSDVIKRMWDYIKGNNLQDPSDKRQILCDEKLKELF 244



 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 23  LVNLPSTLRDFVGQSQISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDEKLKSILLGKPQV 82
           + +L   L++FVG  +++R     ++W+YI+  +LQDPNN+  + CDE L++ L G   +
Sbjct: 58  ICSLSPQLQEFVGAPEMARTEVVKQLWAYIREKDLQDPNNRRNIICDEPLRA-LFGVDTI 116

Query: 83  ELAELPSLIKLH 94
            + ++  ++  H
Sbjct: 117 NMFQMNKVLAKH 128


>Medtr3g055330.1 | SWIB/MDM2 domain protein | HC |
           chr3:21756054-21752570 | 20130731
          Length = 344

 Score = 45.8 bits (107), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%)

Query: 18  ANLIDLVNLPSTLRDFVGQSQISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDEKLKSIL 76
             L  L  +   L+  VGQ  + R     ++W+YIK NNLQDP+NK  + C+++L+ + 
Sbjct: 158 GGLNKLCGVSPELQVIVGQPAMPRTEIVKQLWAYIKKNNLQDPSNKRKIICNDELRVVF 216


>Medtr3g055330.2 | SWIB/MDM2 domain protein | HC |
           chr3:21756054-21752893 | 20130731
          Length = 306

 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%)

Query: 18  ANLIDLVNLPSTLRDFVGQSQISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDEKLKSIL 76
             L  L  +   L+  VGQ  + R     ++W+YIK NNLQDP+NK  + C+++L+ + 
Sbjct: 158 GGLNKLCGVSPELQVIVGQPAMPRTEIVKQLWAYIKKNNLQDPSNKRKIICNDELRVVF 216