Miyakogusa Predicted Gene

Lj6g3v0818980.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0818980.1 Non Characterized Hit- tr|I1N0I6|I1N0I6_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,75.9,0,Histone-fold,Histone-fold; no description,Histone-fold;
seg,NULL; TATA box binding protein associate,CUFF.58352.1
         (544 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g055240.1 | TATA-binding protein associated factor | HC | ...   796   0.0  
Medtr7g024867.1 | transcription initiation factor TFIID subunit-...   662   0.0  
Medtr7g024860.1 | transcription initiation factor TFIID subunit-...   662   0.0  

>Medtr3g055240.1 | TATA-binding protein associated factor | HC |
           chr3:21720307-21725649 | 20130731
          Length = 510

 Score =  796 bits (2056), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/548 (73%), Positives = 437/548 (79%), Gaps = 42/548 (7%)

Query: 1   MSSVPKETIEVIAQSIGITNLSPDVALALAPDLEYRIREIMQESIKCMRHSRRTFLTSDD 60
           MS +PKE+IEVIAQ++GI NLS DVALAL+PDLEYRIREIMQESIKCMRHS RTFLT+DD
Sbjct: 1   MSVIPKESIEVIAQTLGINNLSSDVALALSPDLEYRIREIMQESIKCMRHSMRTFLTTDD 60

Query: 61  VDSALALRNLEPIYGFTSNDPLRFKRAAGHKDLFYXXXXXXXXXXXXEAPLPKAPLDTSI 120
            D+ALALRNLEPIYGF SNDP RFK+AAGH DLFY            EA LPKAPLDTSI
Sbjct: 61  FDTALALRNLEPIYGFASNDPPRFKKAAGHNDLFYIDDKDVDIKDLVEADLPKAPLDTSI 120

Query: 121 TSHWLAIEGVQPAIPENAPVEASSEMRKSEYKEDGLPVDVKLPVKHVITRELQLYYEKIT 180
           TSHWLAIEGVQPAIPENAP EAS+E++ SEYKED LPVD+KLPVKHVIT ELQLYYEKI 
Sbjct: 121 TSHWLAIEGVQPAIPENAPPEASTEIKNSEYKEDRLPVDIKLPVKHVITTELQLYYEKII 180

Query: 181 GLSLNKPGSIPFRRALVSLATDSGLHPLVPYLTCFVADEVARNLNNLNILFALMRLVRSL 240
            L LNK GSI FRRALV+LATDSGLHPLVPY T FVADEVARNLNNLNILFALMRLVRSL
Sbjct: 181 ELILNKSGSILFRRALVTLATDSGLHPLVPYFTRFVADEVARNLNNLNILFALMRLVRSL 240

Query: 241 LHNPHIHTELYIHQLMPPILTCVVAKRIGNRLSDDHWELRNFSANLVASICKRFGHVYHN 300
           L NPHIH ELY+HQLMPPI+TC+VAKRIGNRLSD+HWELR+FSANLVA ICKRFGH+YHN
Sbjct: 241 LQNPHIHIELYLHQLMPPIITCIVAKRIGNRLSDNHWELRDFSANLVALICKRFGHMYHN 300

Query: 301 LQPRVTKTFLHSFLDPTKALTQHYGAIIGIAALGSRMVRLLILPNLEPYLHLIEPEMQLE 360
           LQPRVTKTFLH+FLDPTKAL QHYGAI GIAALGSR+VRLLILPNLEPYLHL+EPE QLE
Sbjct: 301 LQPRVTKTFLHTFLDPTKALPQHYGAIKGIAALGSRLVRLLILPNLEPYLHLLEPEKQLE 360

Query: 361 KQKNEIKRHEAWQVYGALLCAVGQCMHEKAKIFSSLLSPPTRVTSRGNGKALISMPINVG 420
           KQKNEIKR EAWQVYGALLCAVGQ MHEK K FSSLLSP +R TS GNGKA+I+MP    
Sbjct: 361 KQKNEIKRQEAWQVYGALLCAVGQNMHEKVKRFSSLLSPQSRATSSGNGKAMIAMP---- 416

Query: 421 KRKASTDNLMQQQQPPLKKIATDGPGGVIA-MNSMSVDNMQGSTGGYXXXX---XXXXXX 476
                                  G  GV+A MNSMSVDNMQGST G+             
Sbjct: 417 -----------------------GVSGVVAPMNSMSVDNMQGSTSGFPTMMGVSNSSVGM 453

Query: 477 XXXXXRQLSNDHHMPGREVAGQQSKASAILAQAWKDDIDAGQLLSSVVELFGERVLSFIP 536
                RQLSN+++            +S+ILAQAWKDDIDAGQLL  V ELFGE +LSFIP
Sbjct: 454 SSSMGRQLSNENN-----------TSSSILAQAWKDDIDAGQLLPPVFELFGESLLSFIP 502

Query: 537 KPEACIFL 544
           KP+A IFL
Sbjct: 503 KPQAFIFL 510


>Medtr7g024867.1 | transcription initiation factor TFIID
           subunit-like protein | HC | chr7:8216319-8223368 |
           20130731
          Length = 562

 Score =  662 bits (1708), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/579 (57%), Positives = 416/579 (71%), Gaps = 52/579 (8%)

Query: 1   MSSVPKETIEVIAQSIGITNLSPDVALALAPDLEYRIREIMQESIKCMRHSRRTFLTSDD 60
           MS VPKETIEVIAQSIGI NLSPDVAL++APD+EYR+R+IMQE+IKCMRHS+RT LT+DD
Sbjct: 1   MSIVPKETIEVIAQSIGINNLSPDVALSVAPDVEYRMRQIMQEAIKCMRHSKRTTLTADD 60

Query: 61  VDSALALRNLEPIYGFTSNDPLRFKRAAGHKDLFYXXXXXXXXXXXXEAPLPKAPLDTSI 120
           VD+AL L+N+EPIYGF S  PLRFKRA GH+DLFY            EA LPKAPLDT++
Sbjct: 61  VDAALNLKNVEPIYGFASGGPLRFKRAVGHRDLFYIDDKDLDLKDVIEAALPKAPLDTAL 120

Query: 121 TSHWLAIEGVQPAIPENAPVE---ASSEMRKSEYKEDGLPVDVKLPVKHVITRELQLYYE 177
           T HWLAIEGVQPAIPENAPV+   A S+++K E K+D LPVD+KLPVKHV++RELQLY++
Sbjct: 121 TCHWLAIEGVQPAIPENAPVDVISAPSDIKKHEQKDDNLPVDIKLPVKHVLSRELQLYFD 180

Query: 178 KITGLSLNKPGSIPFRRALVSLATDSGLHPLVPYLTCFVADEVARNLNNLNILFALMRLV 237
           K+T L+LN+P S+ F+ ALVSLATDSGLHPLVPY TCFVADEV+R L+N  +LFALMR+V
Sbjct: 181 KVTELALNEPDSVLFKEALVSLATDSGLHPLVPYFTCFVADEVSRGLSNFPLLFALMRVV 240

Query: 238 RSLLHNPHIHTELYIHQLMPPILTCVVAKRIGNRLSDDHWELRNFSANLVASICKRFGHV 297
            SLL NPHIH E Y+HQLMP I+TC+VAKR+G+RL+D+HWELR+F+ANLVASICKRFGHV
Sbjct: 241 NSLLQNPHIHIEPYLHQLMPSIVTCLVAKRLGSRLTDNHWELRDFTANLVASICKRFGHV 300

Query: 298 YHNLQPRVTKTFLHSFLDPTKALTQHYGAIIGIAALGSRMVRLLILPNLEPYLHLIEPEM 357
           Y NLQ R++KT L++F DP KA+TQHYGAI G+ ALG  +VRLL+LPNLE Y+ L+EPEM
Sbjct: 301 YSNLQSRLSKTLLNAFSDPKKAMTQHYGAIQGLGALGPNVVRLLLLPNLEAYIRLLEPEM 360

Query: 358 QLEKQKNEIKRHEAWQVYGALLCAVGQCMHEKAKIFSSLLSPPTRVTSRGNGKALISMPI 417
            LE QKNE+KRHEAW+VYGALL A GQC++   K+F +  SP      + +   L S P 
Sbjct: 361 LLETQKNEMKRHEAWRVYGALLRAAGQCVYVSLKLFPAFPSPLPHTVWKTSASVLTSPP- 419

Query: 418 NVGKRKASTDNLMQQQQPPLKKIATDGPGGVIAMNS------------------------ 453
              KRKAS   L  +QQPPLKK+ TDG   V+  NS                        
Sbjct: 420 --NKRKASPMEL--EQQPPLKKVDTDGEVSVVQENSSASHKEEETVTQASSAELKIGAAS 475

Query: 454 --------MSVDNMQGSTGGYXXXXXXXXXXXXXXXRQLSNDHHMPGREVAGQQSKASAI 505
                   ++ D +  S+GG                 +++ D  +       Q  K S++
Sbjct: 476 SSGETKNKITTDGVVRSSGG------------DTQDNKITTDGVVRSSGGDTQDLKISSV 523

Query: 506 LAQAWKDDIDAGQLLSSVVELFGERVLSFIPKPEACIFL 544
           LA  WKD++++G++L+S+VELFGE +LSFI   E C+FL
Sbjct: 524 LAHIWKDELNSGRVLTSLVELFGENILSFIQNREMCMFL 562


>Medtr7g024860.1 | transcription initiation factor TFIID
           subunit-like protein | HC | chr7:8203574-8211138 |
           20130731
          Length = 562

 Score =  662 bits (1708), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/579 (57%), Positives = 416/579 (71%), Gaps = 52/579 (8%)

Query: 1   MSSVPKETIEVIAQSIGITNLSPDVALALAPDLEYRIREIMQESIKCMRHSRRTFLTSDD 60
           MS VPKETIEVIAQSIGI NLSPDVAL++APD+EYR+R+IMQE+IKCMRHS+RT LT+DD
Sbjct: 1   MSIVPKETIEVIAQSIGINNLSPDVALSVAPDVEYRMRQIMQEAIKCMRHSKRTTLTADD 60

Query: 61  VDSALALRNLEPIYGFTSNDPLRFKRAAGHKDLFYXXXXXXXXXXXXEAPLPKAPLDTSI 120
           VD+AL L+N+EPIYGF S  PLRFKRA GH+DLFY            EA LPKAPLDT++
Sbjct: 61  VDAALNLKNVEPIYGFASGGPLRFKRAVGHRDLFYIDDKDLDLKDVIEAALPKAPLDTAL 120

Query: 121 TSHWLAIEGVQPAIPENAPVE---ASSEMRKSEYKEDGLPVDVKLPVKHVITRELQLYYE 177
           T HWLAIEGVQPAIPENAPV+   A S+++K E K+D LPVD+KLPVKHV++RELQLY++
Sbjct: 121 TCHWLAIEGVQPAIPENAPVDVISAPSDIKKHEQKDDNLPVDIKLPVKHVLSRELQLYFD 180

Query: 178 KITGLSLNKPGSIPFRRALVSLATDSGLHPLVPYLTCFVADEVARNLNNLNILFALMRLV 237
           K+T L+LN+P S+ F+ ALVSLATDSGLHPLVPY TCFVADEV+R L+N  +LFALMR+V
Sbjct: 181 KVTELALNEPDSVLFKEALVSLATDSGLHPLVPYFTCFVADEVSRGLSNFPLLFALMRVV 240

Query: 238 RSLLHNPHIHTELYIHQLMPPILTCVVAKRIGNRLSDDHWELRNFSANLVASICKRFGHV 297
            SLL NPHIH E Y+HQLMP I+TC+VAKR+G+RL+D+HWELR+F+ANLVASICKRFGHV
Sbjct: 241 NSLLQNPHIHIEPYLHQLMPSIVTCLVAKRLGSRLTDNHWELRDFTANLVASICKRFGHV 300

Query: 298 YHNLQPRVTKTFLHSFLDPTKALTQHYGAIIGIAALGSRMVRLLILPNLEPYLHLIEPEM 357
           Y NLQ R++KT L++F DP KA+TQHYGAI G+ ALG  +VRLL+LPNLE Y+ L+EPEM
Sbjct: 301 YSNLQSRLSKTLLNAFSDPKKAMTQHYGAIQGLGALGPNVVRLLLLPNLEAYIRLLEPEM 360

Query: 358 QLEKQKNEIKRHEAWQVYGALLCAVGQCMHEKAKIFSSLLSPPTRVTSRGNGKALISMPI 417
            LE QKNE+KRHEAW+VYGALL A GQC++   K+F +  SP      + +   L S P 
Sbjct: 361 LLETQKNEMKRHEAWRVYGALLRAAGQCVYVSLKLFPAFPSPLPHTVWKTSASVLTSPP- 419

Query: 418 NVGKRKASTDNLMQQQQPPLKKIATDGPGGVIAMNS------------------------ 453
              KRKAS   L  +QQPPLKK+ TDG   V+  NS                        
Sbjct: 420 --NKRKASPMEL--EQQPPLKKVDTDGEVSVVQENSSASHKEEETVTQASSAELKIGAAS 475

Query: 454 --------MSVDNMQGSTGGYXXXXXXXXXXXXXXXRQLSNDHHMPGREVAGQQSKASAI 505
                   ++ D +  S+GG                 +++ D  +       Q  K S++
Sbjct: 476 SSGETKNKITTDGVVRSSGG------------DTQDNKITTDGVVRSSGGDTQDLKISSV 523

Query: 506 LAQAWKDDIDAGQLLSSVVELFGERVLSFIPKPEACIFL 544
           LA  WKD++++G++L+S+VELFGE +LSFI   E C+FL
Sbjct: 524 LAHIWKDELNSGRVLTSLVELFGENILSFIQNREMCMFL 562