Miyakogusa Predicted Gene

Lj6g3v0815560.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0815560.1 tr|I0Z0S9|I0Z0S9_9CHLO SWIB-domain-containing
protein OS=Coccomyxa subellipsoidea C-169 PE=4
SV=1,31.91,1e-18,seg,NULL; SUBFAMILY NOT NAMED,NULL; BRG-1 ASSOCIATED
FACTOR 60 (BAF60),NULL; SWIB,SWIB/MDM2 domain; ,CUFF.58378.1
         (334 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g055330.1 | SWIB/MDM2 domain protein | HC | chr3:21756054-...   460   e-130
Medtr3g055330.2 | SWIB/MDM2 domain protein | HC | chr3:21756054-...   372   e-103
Medtr5g018010.1 | upstream activation factor subunit UAF30, puta...   155   7e-38
Medtr5g018010.3 | upstream activation factor subunit UAF30, puta...   153   2e-37
Medtr5g018010.2 | upstream activation factor subunit UAF30, puta...   153   2e-37
Medtr5g025500.1 | SWIB/MDM2 domain protein | HC | chr5:10358957-...    75   1e-13
Medtr5g005200.1 | SWIB/MDM2 domain protein | HC | chr5:242485-24...    71   1e-12

>Medtr3g055330.1 | SWIB/MDM2 domain protein | HC |
           chr3:21756054-21752570 | 20130731
          Length = 344

 Score =  460 bits (1184), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 238/351 (67%), Positives = 258/351 (73%), Gaps = 29/351 (8%)

Query: 3   VTEEEISEALQSLLRESNPRRPTFTTLNQVLHQLQTNLG-HDLSHKLDFIAAQINLLLAX 61
           VTEEEI  A+ SL  E+NPR  TFTTLNQV+ +LQ+ LG +DL+HK+DFI  QINLL A 
Sbjct: 4   VTEEEICSAIHSLFTETNPRTRTFTTLNQVVSELQSKLGGYDLTHKIDFITEQINLLFAA 63

Query: 62  XXXXXXXXXXXXXX----------------XXXXKDHFALHQNPNYPHGPVTSSFQTFSS 105
                                             KDHF LHQNPN    PVTS+F+    
Sbjct: 64  SSQHQQQHVHHHQQQQLQQPPPPQQQPQLISFERKDHFTLHQNPNSHSVPVTSAFRN--- 120

Query: 106 NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDSTQTKPKRRGGPGGLNKLCGVSPELQVI 165
                                         K+S Q KPKRRGGPGGLNKLCGVSPELQVI
Sbjct: 121 -------NVVVSSAAVADASVAHVSANVLPKESAQPKPKRRGGPGGLNKLCGVSPELQVI 173

Query: 166 VGQPALPRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELRVVFETDCTDMFKMNKLLAKH 225
           VGQPA+PRTEIVKQLWAYI+KNNLQDPSNKRKIICNDELRVVFETDCTDMFKMNKLLAKH
Sbjct: 174 VGQPAMPRTEIVKQLWAYIKKNNLQDPSNKRKIICNDELRVVFETDCTDMFKMNKLLAKH 233

Query: 226 IIALEPSKQPAPKRQKVDVESGTKSAEPA--PSVIISDTLANFFGVTGREMLQSEVLRRI 283
           IIALEP+K+PAPK+QKV+VE GT+SAEPA  PSVIISD+LANFFGVTGREMLQ+EVLRRI
Sbjct: 234 IIALEPTKKPAPKKQKVEVEVGTRSAEPAPTPSVIISDSLANFFGVTGREMLQTEVLRRI 293

Query: 284 WEYIKVKQLEDPVNPMAIMCDAKLQEIFGCESISALGIPEVLGRHHIFRRS 334
           WEYIKV QLEDPVNPMAIMCDAKLQEIFGCESISALGIPEVLGRHHIFRRS
Sbjct: 294 WEYIKVNQLEDPVNPMAIMCDAKLQEIFGCESISALGIPEVLGRHHIFRRS 344


>Medtr3g055330.2 | SWIB/MDM2 domain protein | HC |
           chr3:21756054-21752893 | 20130731
          Length = 306

 Score =  372 bits (956), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/310 (63%), Positives = 217/310 (70%), Gaps = 29/310 (9%)

Query: 3   VTEEEISEALQSLLRESNPRRPTFTTLNQVLHQLQTNLG-HDLSHKLDFIAAQINLLLAX 61
           VTEEEI  A+ SL  E+NPR  TFTTLNQV+ +LQ+ LG +DL+HK+DFI  QINLL A 
Sbjct: 4   VTEEEICSAIHSLFTETNPRTRTFTTLNQVVSELQSKLGGYDLTHKIDFITEQINLLFAA 63

Query: 62  XXXXXXXXXXXXXX----------------XXXXKDHFALHQNPNYPHGPVTSSFQTFSS 105
                                             KDHF LHQNPN    PVTS+F+    
Sbjct: 64  SSQHQQQHVHHHQQQQLQQPPPPQQQPQLISFERKDHFTLHQNPNSHSVPVTSAFRN--- 120

Query: 106 NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDSTQTKPKRRGGPGGLNKLCGVSPELQVI 165
                                         K+S Q KPKRRGGPGGLNKLCGVSPELQVI
Sbjct: 121 -------NVVVSSAAVADASVAHVSANVLPKESAQPKPKRRGGPGGLNKLCGVSPELQVI 173

Query: 166 VGQPALPRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELRVVFETDCTDMFKMNKLLAKH 225
           VGQPA+PRTEIVKQLWAYI+KNNLQDPSNKRKIICNDELRVVFETDCTDMFKMNKLLAKH
Sbjct: 174 VGQPAMPRTEIVKQLWAYIKKNNLQDPSNKRKIICNDELRVVFETDCTDMFKMNKLLAKH 233

Query: 226 IIALEPSKQPAPKRQKVDVESGTKSAEPA--PSVIISDTLANFFGVTGREMLQSEVLRRI 283
           IIALEP+K+PAPK+QKV+VE GT+SAEPA  PSVIISD+LANFFGVTGREMLQ+EVLRRI
Sbjct: 234 IIALEPTKKPAPKKQKVEVEVGTRSAEPAPTPSVIISDSLANFFGVTGREMLQTEVLRRI 293

Query: 284 WEYIKVKQLE 293
           WEYIKV QLE
Sbjct: 294 WEYIKVNQLE 303


>Medtr5g018010.1 | upstream activation factor subunit UAF30,
           putative | HC | chr5:6695520-6691091 | 20130731
          Length = 344

 Score =  155 bits (391), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 85/214 (39%), Positives = 123/214 (57%), Gaps = 44/214 (20%)

Query: 154 KLCGVSPELQVIVGQPALPRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELRVVFETDCT 213
           K+C +SP+LQ  VG P + RTE+VKQLWAYIR+ +LQDP+N+R IIC++ LR +F  D  
Sbjct: 134 KICSLSPQLQEFVGAPEMARTEVVKQLWAYIREKDLQDPNNRRNIICDEPLRALFGVDTI 193

Query: 214 DMFKMNKLLAKHIIALE----------PSKQPAP-------------------------- 237
           +MF+MNK+LAKHI  L+          P ++PAP                          
Sbjct: 194 NMFQMNKVLAKHIWPLDSDDVIQVKSAPKEKPAPKEKPARKEKKKKQEREDDDLDEPKGK 253

Query: 238 -KRQKVDVESGTKSAEPAPSVIISDTLANFFGVTGREMLQSEVLRRIWEYIKVKQLEDPV 296
            KRQKV    G+     AP + +SD LA F G +  E+ +S+V++R+W+YIK   L+DP 
Sbjct: 254 EKRQKV----GSGKGFLAP-LQLSDALAKFLGES--ELSRSDVIKRMWDYIKGNNLQDPS 306

Query: 297 NPMAIMCDAKLQEIFGCESISALGIPEVLGRHHI 330
           +   I+CD KL+E+F  +S     + ++L  H I
Sbjct: 307 DKRQILCDEKLKELFDVDSFVGFTVTKLLAPHFI 340



 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 59/96 (61%), Gaps = 2/96 (2%)

Query: 137 DSTQTKPKRR--GGPGGLNKLCGVSPELQVIVGQPALPRTEIVKQLWAYIRKNNLQDPSN 194
           D  + K KR+  G   G      +S  L   +G+  L R++++K++W YI+ NNLQDPS+
Sbjct: 248 DEPKGKEKRQKVGSGKGFLAPLQLSDALAKFLGESELSRSDVIKRMWDYIKGNNLQDPSD 307

Query: 195 KRKIICNDELRVVFETDCTDMFKMNKLLAKHIIALE 230
           KR+I+C+++L+ +F+ D    F + KLLA H I  E
Sbjct: 308 KRQILCDEKLKELFDVDSFVGFTVTKLLAPHFIKAE 343


>Medtr5g018010.3 | upstream activation factor subunit UAF30,
           putative | HC | chr5:6695520-6691109 | 20130731
          Length = 267

 Score =  153 bits (387), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 85/214 (39%), Positives = 123/214 (57%), Gaps = 44/214 (20%)

Query: 154 KLCGVSPELQVIVGQPALPRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELRVVFETDCT 213
           K+C +SP+LQ  VG P + RTE+VKQLWAYIR+ +LQDP+N+R IIC++ LR +F  D  
Sbjct: 57  KICSLSPQLQEFVGAPEMARTEVVKQLWAYIREKDLQDPNNRRNIICDEPLRALFGVDTI 116

Query: 214 DMFKMNKLLAKHIIALE----------PSKQPAP-------------------------- 237
           +MF+MNK+LAKHI  L+          P ++PAP                          
Sbjct: 117 NMFQMNKVLAKHIWPLDSDDVIQVKSAPKEKPAPKEKPARKEKKKKQEREDDDLDEPKGK 176

Query: 238 -KRQKVDVESGTKSAEPAPSVIISDTLANFFGVTGREMLQSEVLRRIWEYIKVKQLEDPV 296
            KRQKV    G+     AP + +SD LA F G +  E+ +S+V++R+W+YIK   L+DP 
Sbjct: 177 EKRQKV----GSGKGFLAP-LQLSDALAKFLGES--ELSRSDVIKRMWDYIKGNNLQDPS 229

Query: 297 NPMAIMCDAKLQEIFGCESISALGIPEVLGRHHI 330
           +   I+CD KL+E+F  +S     + ++L  H I
Sbjct: 230 DKRQILCDEKLKELFDVDSFVGFTVTKLLAPHFI 263



 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 61/97 (62%), Gaps = 4/97 (4%)

Query: 137 DSTQTKPKRR---GGPGGLNKLCGVSPELQVIVGQPALPRTEIVKQLWAYIRKNNLQDPS 193
           D  + K KR+    G G L  L  +S  L   +G+  L R++++K++W YI+ NNLQDPS
Sbjct: 171 DEPKGKEKRQKVGSGKGFLAPL-QLSDALAKFLGESELSRSDVIKRMWDYIKGNNLQDPS 229

Query: 194 NKRKIICNDELRVVFETDCTDMFKMNKLLAKHIIALE 230
           +KR+I+C+++L+ +F+ D    F + KLLA H I  E
Sbjct: 230 DKRQILCDEKLKELFDVDSFVGFTVTKLLAPHFIKAE 266


>Medtr5g018010.2 | upstream activation factor subunit UAF30,
           putative | HC | chr5:6695520-6691109 | 20130731
          Length = 267

 Score =  153 bits (387), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 85/214 (39%), Positives = 123/214 (57%), Gaps = 44/214 (20%)

Query: 154 KLCGVSPELQVIVGQPALPRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELRVVFETDCT 213
           K+C +SP+LQ  VG P + RTE+VKQLWAYIR+ +LQDP+N+R IIC++ LR +F  D  
Sbjct: 57  KICSLSPQLQEFVGAPEMARTEVVKQLWAYIREKDLQDPNNRRNIICDEPLRALFGVDTI 116

Query: 214 DMFKMNKLLAKHIIALE----------PSKQPAP-------------------------- 237
           +MF+MNK+LAKHI  L+          P ++PAP                          
Sbjct: 117 NMFQMNKVLAKHIWPLDSDDVIQVKSAPKEKPAPKEKPARKEKKKKQEREDDDLDEPKGK 176

Query: 238 -KRQKVDVESGTKSAEPAPSVIISDTLANFFGVTGREMLQSEVLRRIWEYIKVKQLEDPV 296
            KRQKV    G+     AP + +SD LA F G +  E+ +S+V++R+W+YIK   L+DP 
Sbjct: 177 EKRQKV----GSGKGFLAP-LQLSDALAKFLGES--ELSRSDVIKRMWDYIKGNNLQDPS 229

Query: 297 NPMAIMCDAKLQEIFGCESISALGIPEVLGRHHI 330
           +   I+CD KL+E+F  +S     + ++L  H I
Sbjct: 230 DKRQILCDEKLKELFDVDSFVGFTVTKLLAPHFI 263



 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 61/97 (62%), Gaps = 4/97 (4%)

Query: 137 DSTQTKPKRR---GGPGGLNKLCGVSPELQVIVGQPALPRTEIVKQLWAYIRKNNLQDPS 193
           D  + K KR+    G G L  L  +S  L   +G+  L R++++K++W YI+ NNLQDPS
Sbjct: 171 DEPKGKEKRQKVGSGKGFLAPL-QLSDALAKFLGESELSRSDVIKRMWDYIKGNNLQDPS 229

Query: 194 NKRKIICNDELRVVFETDCTDMFKMNKLLAKHIIALE 230
           +KR+I+C+++L+ +F+ D    F + KLLA H I  E
Sbjct: 230 DKRQILCDEKLKELFDVDSFVGFTVTKLLAPHFIKAE 266


>Medtr5g025500.1 | SWIB/MDM2 domain protein | HC |
           chr5:10358957-10357050 | 20130731
          Length = 134

 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 54/79 (68%), Gaps = 1/79 (1%)

Query: 150 GGLNKLCGVSPELQVIVGQPALPRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELRVVFE 209
           GG+ K+  V+ EL   +G P + RTE VK++W YI+  NLQ+P+NK++I C+D+L+ +F+
Sbjct: 53  GGIQKVVQVTSELGNFIGAPEVSRTEAVKKVWEYIKLQNLQNPNNKKEIFCDDKLKTIFD 112

Query: 210 TDCTDMF-KMNKLLAKHII 227
                +F ++ KLLA H +
Sbjct: 113 GKDKVVFTEIAKLLATHFV 131



 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 3/75 (4%)

Query: 257 VIISDTLANFFGVTGREMLQSEVLRRIWEYIKVKQLEDPVNPMAIMCDAKLQEIF-GCES 315
           V ++  L NF G    E+ ++E ++++WEYIK++ L++P N   I CD KL+ IF G + 
Sbjct: 59  VQVTSELGNFIG--APEVSRTEAVKKVWEYIKLQNLQNPNNKKEIFCDDKLKTIFDGKDK 116

Query: 316 ISALGIPEVLGRHHI 330
           +    I ++L  H +
Sbjct: 117 VVFTEIAKLLATHFV 131


>Medtr5g005200.1 | SWIB/MDM2 domain protein | HC |
           chr5:242485-244145 | 20130731
          Length = 143

 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 61/93 (65%), Gaps = 2/93 (2%)

Query: 137 DSTQTKPKRRGGP-GGLNKLCGVSPELQVIVGQPALPRTEIVKQLWAYIRKNNLQDPSNK 195
            +T ++P   GG   G+ K   +SPE+Q +VGQP + RT+ +K +WA+I+++NLQ+P  K
Sbjct: 50  SATVSQPPPTGGKIRGIMKPKKISPEMQDLVGQPEISRTQALKSIWAHIKEHNLQNPEKK 109

Query: 196 RKIICNDELRVVFE-TDCTDMFKMNKLLAKHII 227
           R I C+++L+ VF   D  DM ++  L++ H +
Sbjct: 110 RLIRCDEKLKKVFAGRDEVDMLEIAGLISPHFL 142