Miyakogusa Predicted Gene

Lj6g3v0814370.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0814370.1 Non Characterized Hit- tr|D8LKL2|D8LKL2_ECTSI
Putative: Beta-tubulin folding cofactor A
OS=Ectocarpu,47.52,7e-17,Q547H3_ARATH_Q547H3;,Tubulin binding cofactor
A; no description,NULL; TBCA,Tubulin binding cofactor ,CUFF.58305.1
         (113 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g094290.1 | tubulin folding cofactor A | HC | chr5:4119798...   191   9e-50
Medtr5g094860.1 | tubulin folding cofactor A | HC | chr5:4147362...   186   4e-48

>Medtr5g094290.1 | tubulin folding cofactor A | HC |
           chr5:41197987-41186098 | 20130731
          Length = 271

 Score =  191 bits (486), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 95/113 (84%), Positives = 103/113 (91%), Gaps = 1/113 (0%)

Query: 1   MATVRSLKIKTSTCKRIVKELHSYEKEVESEAAKTADMKNRGADPYDLKQQENVLAESRM 60
           M TVRSLKIKTSTCKR+VKELHSYEKEVE EAAKTADMKN+GADPYDLKQQENVL ESRM
Sbjct: 158 MDTVRSLKIKTSTCKRLVKELHSYEKEVEREAAKTADMKNKGADPYDLKQQENVLGESRM 217

Query: 61  MIPDCRKRLEVALEDLKGILAE-MEESDEKECPEVDEAKTTLSEVEKVLETIE 112
           MIPDCRKRLE ALEDLKGILAE + E+D+KE PE+DEA+ T+ EVEKV ETIE
Sbjct: 218 MIPDCRKRLEAALEDLKGILAELLNETDKKESPEIDEARNTIVEVEKVFETIE 270


>Medtr5g094860.1 | tubulin folding cofactor A | HC |
           chr5:41473628-41476208 | 20130731
          Length = 114

 Score =  186 bits (472), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 93/113 (82%), Positives = 101/113 (89%), Gaps = 1/113 (0%)

Query: 1   MATVRSLKIKTSTCKRIVKELHSYEKEVESEAAKTADMKNRGADPYDLKQQENVLAESRM 60
           M TVRSLKIKTSTCKR+VKELHSYEKEVE EAAKTADMKN+GADPYDLKQQENVL ESRM
Sbjct: 1   MDTVRSLKIKTSTCKRLVKELHSYEKEVEREAAKTADMKNKGADPYDLKQQENVLGESRM 60

Query: 61  MIPDCRKRLEVALEDLKGILAE-MEESDEKECPEVDEAKTTLSEVEKVLETIE 112
           MIPDCRKRLE ALEDLKGIL E + E+D+KE PE+DEA+  + EVEKV ETIE
Sbjct: 61  MIPDCRKRLEAALEDLKGILGELLNETDKKESPEIDEARNIIVEVEKVFETIE 113