Miyakogusa Predicted Gene
- Lj6g3v0802280.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v0802280.2 Non Characterized Hit- tr|G7IP97|G7IP97_MEDTR
RNA-binding protein, putative OS=Medicago truncatula
G,39.24,0.00000000007,RRM_1,RNA recognition motif domain; seg,NULL;
RNA recognition motif,RNA recognition motif domain; SU,CUFF.58296.2
(324 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C, p... 508 e-144
Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C, p... 508 e-144
Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 413 e-115
Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 413 e-115
Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 370 e-103
Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 370 e-103
Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 370 e-103
Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 253 2e-67
Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 249 2e-66
Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 249 2e-66
Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 188 7e-48
Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 164 9e-41
Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 157 2e-38
Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 135 6e-32
Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 135 6e-32
Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 135 6e-32
Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 135 6e-32
Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 86 3e-17
Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |... 84 2e-16
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 81 2e-15
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 80 2e-15
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 80 2e-15
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 79 5e-15
Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 78 1e-14
Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 78 1e-14
Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 78 1e-14
Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 78 1e-14
Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 78 1e-14
Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 77 2e-14
Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 77 2e-14
Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 77 3e-14
Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 77 3e-14
Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 76 4e-14
Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 75 1e-13
Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 75 1e-13
Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 73 4e-13
Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 73 4e-13
Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 72 5e-13
Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 72 5e-13
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 72 6e-13
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 72 8e-13
Medtr7g088140.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 72 1e-12
Medtr7g088140.5 | RNA recognition motif, a.k.a. RRM, RBD protein... 72 1e-12
Medtr7g088140.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 72 1e-12
Medtr7g088140.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 72 1e-12
Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 71 1e-12
Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 71 1e-12
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 71 2e-12
Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 71 2e-12
Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 71 2e-12
Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 71 2e-12
Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 71 2e-12
Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 70 2e-12
Medtr4g122650.1 | flowering time control FCA-like protein | HC |... 70 2e-12
Medtr7g088140.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 70 2e-12
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 4e-12
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708... 69 5e-12
Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC | ch... 69 6e-12
Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 6e-12
Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 7e-12
Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 8e-12
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 69 8e-12
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 69 8e-12
Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 68 1e-11
Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 68 1e-11
Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 67 2e-11
Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 67 2e-11
Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 67 2e-11
Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC | ch... 66 5e-11
Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 66 6e-11
Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 66 6e-11
Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 66 6e-11
Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC | ch... 65 9e-11
Medtr1g097440.2 | polyadenylate-binding protein | HC | chr1:4396... 65 1e-10
Medtr1g097440.1 | polyadenylate-binding protein | HC | chr1:4396... 65 1e-10
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 2e-10
Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 2e-10
Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 64 2e-10
Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC | ch... 62 5e-10
Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 62 6e-10
Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 62 6e-10
Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 62 6e-10
Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 62 6e-10
Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 7e-10
Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC | ch... 62 8e-10
Medtr3g095230.2 | CC1-like splicing factor | LC | chr3:43513031-... 62 1e-09
Medtr3g095230.3 | CC1-like splicing factor | LC | chr3:43513031-... 62 1e-09
Medtr3g095230.1 | CC1-like splicing factor | LC | chr3:43513030-... 62 1e-09
Medtr7g102730.1 | polyadenylate-binding protein | HC | chr7:4165... 61 1e-09
Medtr8g092550.1 | CC1-like splicing factor | HC | chr8:38688579-... 61 1e-09
Medtr6g040070.1 | DEAD/DEAH-box helicase | HC | chr6:14397151-14... 60 2e-09
Medtr3g099590.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 59 6e-09
Medtr3g099590.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 59 6e-09
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341... 59 7e-09
Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 59 7e-09
Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 59 7e-09
Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 8e-09
Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 1e-08
Medtr1g061870.1 | polyadenylate-binding plant protein, putative ... 58 1e-08
Medtr7g010360.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 2e-08
Medtr3g109090.3 | nucleolysin TIAR-like protein | HC | chr3:5042... 57 2e-08
Medtr3g109090.1 | nucleolysin TIAR-like protein | HC | chr3:5042... 57 2e-08
Medtr3g109090.2 | nucleolysin TIAR-like protein | HC | chr3:5042... 57 2e-08
Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 3e-08
Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 4e-08
Medtr4g081510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 5e-08
Medtr4g124940.1 | nucleolysin TIAR-like protein | HC | chr4:5182... 56 5e-08
Medtr3g102040.1 | polyadenylate-binding protein | HC | chr3:4701... 55 7e-08
Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 1e-07
Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 1e-07
Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC | ch... 55 1e-07
Medtr2g069490.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 1e-07
Medtr4g036415.1 | splicing factor-like protein | HC | chr4:13104... 55 1e-07
Medtr8g076100.3 | heterogeneous nuclear ribonucleoprotein | HC |... 54 1e-07
Medtr7g109810.2 | flowering time control FCA-like protein | HC |... 54 1e-07
Medtr8g076100.2 | heterogeneous nuclear ribonucleoprotein | HC |... 54 2e-07
Medtr8g076100.1 | heterogeneous nuclear ribonucleoprotein | HC |... 54 2e-07
Medtr7g109810.1 | flowering time control FCA-like protein | HC |... 54 2e-07
Medtr5g079870.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 2e-07
Medtr6g040190.1 | polyadenylate-binding protein | LC | chr6:1440... 54 3e-07
Medtr5g079870.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 3e-07
Medtr4g094235.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 3e-07
Medtr4g094235.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 3e-07
Medtr4g094235.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 3e-07
Medtr4g094235.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 3e-07
Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 3e-07
Medtr5g070450.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 3e-07
Medtr5g070450.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 3e-07
Medtr5g070450.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 3e-07
Medtr5g070450.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 3e-07
Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 5e-07
Medtr3g029580.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 7e-07
Medtr7g109810.3 | flowering time control FCA-like protein | HC |... 52 7e-07
Medtr7g094670.1 | mRNA capping enzyme, putative | LC | chr7:3777... 52 9e-07
Medtr3g462330.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 1e-06
Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |... 52 1e-06
Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |... 52 1e-06
Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |... 51 1e-06
Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |... 51 1e-06
Medtr6g477870.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 2e-06
Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 4e-06
Medtr1g048080.1 | pentatricopeptide (PPR) repeat protein | HC | ... 49 6e-06
Medtr5g070100.1 | RNA recognition motif (RRM) containing protein... 49 9e-06
Medtr8g031560.1 | eukaryotic translation initiation factor 3 sub... 49 9e-06
>Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22251454 | 20130731
Length = 478
Score = 508 bits (1308), Expect = e-144, Method: Compositional matrix adjust.
Identities = 256/320 (80%), Positives = 267/320 (83%), Gaps = 2/320 (0%)
Query: 1 MESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVA 60
MESDLGKLFIGGISWDT+EE LKEYF YGEVIE VIMRDR TGRARGFGFVVF+D AVA
Sbjct: 1 MESDLGKLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVA 60
Query: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITES 120
ERVI+DKHIIDGRTVEAKKAVPRDDQQN+NRQ TKKIFVGGLPSTITES
Sbjct: 61 ERVIIDKHIIDGRTVEAKKAVPRDDQQNINRQTGSVQGSPGPGRTKKIFVGGLPSTITES 120
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEVKR 180
DFK YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD+VLYKTFHELN KMVEVKR
Sbjct: 121 DFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKR 180
Query: 181 AVPKELSPDPNRSPLIGY-NYGLN-RASSYLNIYAQGYSMSPIGGHGVRMNGRFSPLTSV 238
AVPKELSP P RSPLIGY NY LN RASSYLN Y QGYSMSPIGG GVRM+GRFSPLT
Sbjct: 181 AVPKELSPGPTRSPLIGYNNYSLNSRASSYLNNYGQGYSMSPIGGFGVRMDGRFSPLTGG 240
Query: 239 RTGFSPFGNTGYGMGMNLDSGLNPXXXXXXXXXXXXXXXRIFSPFYGGTTSRYTTSICYN 298
RTGF+PFGNTGYGMGMNL+SGL+P RIFSPFY G +SRY T I YN
Sbjct: 241 RTGFTPFGNTGYGMGMNLESGLSPNFGGNSNFGNNLGYGRIFSPFYSGNSSRYATPIGYN 300
Query: 299 GGNGRSDSFINSPSRNVWGN 318
GGNGR DS +NS SRNVWGN
Sbjct: 301 GGNGRGDSLMNSTSRNVWGN 320
>Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22250364 | 20130731
Length = 481
Score = 508 bits (1307), Expect = e-144, Method: Compositional matrix adjust.
Identities = 256/320 (80%), Positives = 267/320 (83%), Gaps = 2/320 (0%)
Query: 1 MESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVA 60
MESDLGKLFIGGISWDT+EE LKEYF YGEVIE VIMRDR TGRARGFGFVVF+D AVA
Sbjct: 1 MESDLGKLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVA 60
Query: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITES 120
ERVI+DKHIIDGRTVEAKKAVPRDDQQN+NRQ TKKIFVGGLPSTITES
Sbjct: 61 ERVIIDKHIIDGRTVEAKKAVPRDDQQNINRQTGSVQGSPGPGRTKKIFVGGLPSTITES 120
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEVKR 180
DFK YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD+VLYKTFHELN KMVEVKR
Sbjct: 121 DFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKR 180
Query: 181 AVPKELSPDPNRSPLIGY-NYGLN-RASSYLNIYAQGYSMSPIGGHGVRMNGRFSPLTSV 238
AVPKELSP P RSPLIGY NY LN RASSYLN Y QGYSMSPIGG GVRM+GRFSPLT
Sbjct: 181 AVPKELSPGPTRSPLIGYNNYSLNSRASSYLNNYGQGYSMSPIGGFGVRMDGRFSPLTGG 240
Query: 239 RTGFSPFGNTGYGMGMNLDSGLNPXXXXXXXXXXXXXXXRIFSPFYGGTTSRYTTSICYN 298
RTGF+PFGNTGYGMGMNL+SGL+P RIFSPFY G +SRY T I YN
Sbjct: 241 RTGFTPFGNTGYGMGMNLESGLSPNFGGNSNFGNNLGYGRIFSPFYSGNSSRYATPIGYN 300
Query: 299 GGNGRSDSFINSPSRNVWGN 318
GGNGR DS +NS SRNVWGN
Sbjct: 301 GGNGRGDSLMNSTSRNVWGN 320
>Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42753184 | 20130731
Length = 493
Score = 413 bits (1062), Expect = e-115, Method: Compositional matrix adjust.
Identities = 205/318 (64%), Positives = 243/318 (76%), Gaps = 1/318 (0%)
Query: 1 MESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVA 60
M+SD GKLFIGGISWDTNEE L+EYF YGEV E VIM+DR TGRARGFGFVVF D AVA
Sbjct: 1 MQSDSGKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVA 60
Query: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITES 120
+ V+ +KH IDGR VEAKKAVPRDDQ ++R T+KIFVGGL ST+TES
Sbjct: 61 DIVVQEKHNIDGRMVEAKKAVPRDDQNVLSRTSGSIHGSPGPGRTRKIFVGGLASTVTES 120
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEVKR 180
DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD+VL KTFHELN KMVEVKR
Sbjct: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNGKMVEVKR 180
Query: 181 AVPKELSPDPNRSPLIGYNYGLNRASSYLNIYAQGYSMSPIGGHGVRMNGRFSPLTSVRT 240
AVPKELSP P RSPL GYNYGL+R +S+LN + Q YS S +GG+G+R++GRFSP+ R
Sbjct: 181 AVPKELSPGPARSPLSGYNYGLSRVNSFLNGFNQSYSPSTVGGYGLRVDGRFSPVAGGRN 240
Query: 241 GFSPFGNTGYGMGMNLDSGLNPXXXXXXXXXXXXXXXRIFSPFYGGTTSRYTTSICYNGG 300
++PFG +GYGMGMN + GL+P R +P++ G ++R+ + + Y G
Sbjct: 241 AYAPFG-SGYGMGMNFEPGLSPGFGGNASFNGNLSYGRGLNPYFIGGSNRFGSPVGYESG 299
Query: 301 NGRSDSFINSPSRNVWGN 318
NG S+SF +S +RN+WGN
Sbjct: 300 NGGSNSFFSSVTRNLWGN 317
>Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42754792 | 20130731
Length = 479
Score = 413 bits (1061), Expect = e-115, Method: Compositional matrix adjust.
Identities = 205/318 (64%), Positives = 243/318 (76%), Gaps = 1/318 (0%)
Query: 1 MESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVA 60
M+SD GKLFIGGISWDTNEE L+EYF YGEV E VIM+DR TGRARGFGFVVF D AVA
Sbjct: 1 MQSDSGKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVA 60
Query: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITES 120
+ V+ +KH IDGR VEAKKAVPRDDQ ++R T+KIFVGGL ST+TES
Sbjct: 61 DIVVQEKHNIDGRMVEAKKAVPRDDQNVLSRTSGSIHGSPGPGRTRKIFVGGLASTVTES 120
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEVKR 180
DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD+VL KTFHELN KMVEVKR
Sbjct: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNGKMVEVKR 180
Query: 181 AVPKELSPDPNRSPLIGYNYGLNRASSYLNIYAQGYSMSPIGGHGVRMNGRFSPLTSVRT 240
AVPKELSP P RSPL GYNYGL+R +S+LN + Q YS S +GG+G+R++GRFSP+ R
Sbjct: 181 AVPKELSPGPARSPLSGYNYGLSRVNSFLNGFNQSYSPSTVGGYGLRVDGRFSPVAGGRN 240
Query: 241 GFSPFGNTGYGMGMNLDSGLNPXXXXXXXXXXXXXXXRIFSPFYGGTTSRYTTSICYNGG 300
++PFG +GYGMGMN + GL+P R +P++ G ++R+ + + Y G
Sbjct: 241 AYAPFG-SGYGMGMNFEPGLSPGFGGNASFNGNLSYGRGLNPYFIGGSNRFGSPVGYESG 299
Query: 301 NGRSDSFINSPSRNVWGN 318
NG S+SF +S +RN+WGN
Sbjct: 300 NGGSNSFFSSVTRNLWGN 317
>Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465398-9461370 | 20130731
Length = 481
Score = 370 bits (951), Expect = e-103, Method: Compositional matrix adjust.
Identities = 193/321 (60%), Positives = 233/321 (72%), Gaps = 7/321 (2%)
Query: 4 DLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERV 63
D GKLFIGGISWDTNE+ L++YF +G+V+E VIM+DR TGRARGFGFVVFAD +VAERV
Sbjct: 2 DPGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV 61
Query: 64 IMDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXX--XTKKIFVGGLPSTITESD 121
+M+KH+IDGRTVEAKKAVPRDDQ R TKKIFVGGL ST+TESD
Sbjct: 62 VMEKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESD 121
Query: 122 FKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEVKRA 181
FK YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV+KVL+KTFHELN KMVEVKRA
Sbjct: 122 FKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKRA 181
Query: 182 VPKELSPDPNRSPLIGYNYG-LNRASSYLNIYAQGYSMSPIGGHGVRMNGRFSPLTSVRT 240
VPK+LSP P+R L G++YG ++R S+ N +AQGY+ S IGGHG+R++GR SP R+
Sbjct: 182 VPKDLSPSPSRGQLGGFSYGTMSRVGSFSNGFAQGYNPSLIGGHGLRLDGRLSPANVGRS 241
Query: 241 GFSPFGNTGYGMGMNLDSGLNPXXXXXXXXXXXXXXXRIFSPFYGGTTSRYTTSICYNGG 300
G+S F + YG G+N + LN R S Y + SRY ++ Y G
Sbjct: 242 GYSLF-SPSYGTGLNFEPPLN--QNENENFTSNFIMGRALSSPYSASPSRYNNAMAYAAG 298
Query: 301 -NGRSDSFINSPSRNVWGNEN 320
N + S I+S ++++WGN N
Sbjct: 299 SNVGNSSAISSTNQSLWGNGN 319
>Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465402-9461271 | 20130731
Length = 481
Score = 370 bits (951), Expect = e-103, Method: Compositional matrix adjust.
Identities = 193/321 (60%), Positives = 233/321 (72%), Gaps = 7/321 (2%)
Query: 4 DLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERV 63
D GKLFIGGISWDTNE+ L++YF +G+V+E VIM+DR TGRARGFGFVVFAD +VAERV
Sbjct: 2 DPGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV 61
Query: 64 IMDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXX--XTKKIFVGGLPSTITESD 121
+M+KH+IDGRTVEAKKAVPRDDQ R TKKIFVGGL ST+TESD
Sbjct: 62 VMEKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESD 121
Query: 122 FKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEVKRA 181
FK YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV+KVL+KTFHELN KMVEVKRA
Sbjct: 122 FKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKRA 181
Query: 182 VPKELSPDPNRSPLIGYNYG-LNRASSYLNIYAQGYSMSPIGGHGVRMNGRFSPLTSVRT 240
VPK+LSP P+R L G++YG ++R S+ N +AQGY+ S IGGHG+R++GR SP R+
Sbjct: 182 VPKDLSPSPSRGQLGGFSYGTMSRVGSFSNGFAQGYNPSLIGGHGLRLDGRLSPANVGRS 241
Query: 241 GFSPFGNTGYGMGMNLDSGLNPXXXXXXXXXXXXXXXRIFSPFYGGTTSRYTTSICYNGG 300
G+S F + YG G+N + LN R S Y + SRY ++ Y G
Sbjct: 242 GYSLF-SPSYGTGLNFEPPLN--QNENENFTSNFIMGRALSSPYSASPSRYNNAMAYAAG 298
Query: 301 -NGRSDSFINSPSRNVWGNEN 320
N + S I+S ++++WGN N
Sbjct: 299 SNVGNSSAISSTNQSLWGNGN 319
>Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465359-9461307 | 20130731
Length = 481
Score = 370 bits (951), Expect = e-103, Method: Compositional matrix adjust.
Identities = 193/321 (60%), Positives = 233/321 (72%), Gaps = 7/321 (2%)
Query: 4 DLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERV 63
D GKLFIGGISWDTNE+ L++YF +G+V+E VIM+DR TGRARGFGFVVFAD +VAERV
Sbjct: 2 DPGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV 61
Query: 64 IMDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXX--XTKKIFVGGLPSTITESD 121
+M+KH+IDGRTVEAKKAVPRDDQ R TKKIFVGGL ST+TESD
Sbjct: 62 VMEKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESD 121
Query: 122 FKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEVKRA 181
FK YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV+KVL+KTFHELN KMVEVKRA
Sbjct: 122 FKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKRA 181
Query: 182 VPKELSPDPNRSPLIGYNYG-LNRASSYLNIYAQGYSMSPIGGHGVRMNGRFSPLTSVRT 240
VPK+LSP P+R L G++YG ++R S+ N +AQGY+ S IGGHG+R++GR SP R+
Sbjct: 182 VPKDLSPSPSRGQLGGFSYGTMSRVGSFSNGFAQGYNPSLIGGHGLRLDGRLSPANVGRS 241
Query: 241 GFSPFGNTGYGMGMNLDSGLNPXXXXXXXXXXXXXXXRIFSPFYGGTTSRYTTSICYNGG 300
G+S F + YG G+N + LN R S Y + SRY ++ Y G
Sbjct: 242 GYSLF-SPSYGTGLNFEPPLN--QNENENFTSNFIMGRALSSPYSASPSRYNNAMAYAAG 298
Query: 301 -NGRSDSFINSPSRNVWGNEN 320
N + S I+S ++++WGN N
Sbjct: 299 SNVGNSSAISSTNQSLWGNGN 319
>Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9464335-9461370 | 20130731
Length = 411
Score = 253 bits (646), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 140/250 (56%), Positives = 169/250 (67%), Gaps = 7/250 (2%)
Query: 75 VEAKKAVPRDDQQNVNRQXXXXXXXXXXX--XTKKIFVGGLPSTITESDFKKYFDQFGTI 132
VEAKKAVPRDDQ R TKKIFVGGL ST+TESDFK YFDQFGTI
Sbjct: 3 VEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDFKNYFDQFGTI 62
Query: 133 TDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEVKRAVPKELSPDPNR 192
TDVVVMYDHNTQRPRGFGFITYDSEEAV+KVL+KTFHELN KMVEVKRAVPK+LSP P+R
Sbjct: 63 TDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKRAVPKDLSPSPSR 122
Query: 193 SPLIGYNYG-LNRASSYLNIYAQGYSMSPIGGHGVRMNGRFSPLTSVRTGFSPFGNTGYG 251
L G++YG ++R S+ N +AQGY+ S IGGHG+R++GR SP R+G+S F + YG
Sbjct: 123 GQLGGFSYGTMSRVGSFSNGFAQGYNPSLIGGHGLRLDGRLSPANVGRSGYSLF-SPSYG 181
Query: 252 MGMNLDSGLNPXXXXXXXXXXXXXXXRIFSPFYGGTTSRYTTSICYNGG-NGRSDSFINS 310
G+N + LN R S Y + SRY ++ Y G N + S I+S
Sbjct: 182 TGLNFEPPLN--QNENENFTSNFIMGRALSSPYSASPSRYNNAMAYAAGSNVGNSSAISS 239
Query: 311 PSRNVWGNEN 320
++++WGN N
Sbjct: 240 TNQSLWGNGN 249
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
K+F+GG++ E K YF ++G + +VV+M D T R RGFGF+ + E+V+
Sbjct: 37 KIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHK 96
Query: 67 K-HIIDGRTVEAKKAVPRD 84
H ++G+ VE K+AVP+D
Sbjct: 97 TFHELNGKMVEVKRAVPKD 115
>Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 249 bits (637), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 118/197 (59%), Positives = 149/197 (75%), Gaps = 6/197 (3%)
Query: 1 MESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVA 60
M+SD GKLFIGGISWDTNEE LKE+F YG+V+ +MR++ TG+ RGFGFVVF+D +V
Sbjct: 1 MDSDQGKLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVL 60
Query: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQ------NVNRQXXXXXXXXXXXXTKKIFVGGLP 114
+RV+ DKH+IDGRTV+AK+A R+DQQ + N TKKIFVGGLP
Sbjct: 61 DRVLEDKHVIDGRTVDAKRAFSREDQQISVSSRSGNSNSGMNSGNGGNMRTKKIFVGGLP 120
Query: 115 STITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAK 174
T+ E F++YF+ +G +TDVVVMYD NT RPRGFGFIT+D+EEAVD+VL+KTFH+LN K
Sbjct: 121 PTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHKTFHDLNGK 180
Query: 175 MVEVKRAVPKELSPDPN 191
VEVKRA+PK+ +P N
Sbjct: 181 QVEVKRALPKDANPGAN 197
>Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 249 bits (637), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 118/197 (59%), Positives = 149/197 (75%), Gaps = 6/197 (3%)
Query: 1 MESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVA 60
M+SD GKLFIGGISWDTNEE LKE+F YG+V+ +MR++ TG+ RGFGFVVF+D +V
Sbjct: 1 MDSDQGKLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVL 60
Query: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQ------NVNRQXXXXXXXXXXXXTKKIFVGGLP 114
+RV+ DKH+IDGRTV+AK+A R+DQQ + N TKKIFVGGLP
Sbjct: 61 DRVLEDKHVIDGRTVDAKRAFSREDQQISVSSRSGNSNSGMNSGNGGNMRTKKIFVGGLP 120
Query: 115 STITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAK 174
T+ E F++YF+ +G +TDVVVMYD NT RPRGFGFIT+D+EEAVD+VL+KTFH+LN K
Sbjct: 121 PTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHKTFHDLNGK 180
Query: 175 MVEVKRAVPKELSPDPN 191
VEVKRA+PK+ +P N
Sbjct: 181 QVEVKRALPKDANPGAN 197
>Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:47715877-47717644 | 20130731
Length = 371
Score = 188 bits (477), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 97/192 (50%), Positives = 126/192 (65%), Gaps = 7/192 (3%)
Query: 1 MESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVA 60
M+SD KLF+GGIS +T E+ LK +F KYG+V+ I DR T RGFGFV F+D + A
Sbjct: 5 MDSDKAKLFVGGISRETTEDTLKHHFTKYGDVLHSTISFDRTTRIPRGFGFVTFSDISSA 64
Query: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQNVN-------RQXXXXXXXXXXXXTKKIFVGGL 113
+ D H I GR VE +KA+PR +Q N TKKIFVGGL
Sbjct: 65 HNALQDTHAILGRKVEVRKAIPRSEQLQQNQLQNRGGNSYSGYECGNEHIRTKKIFVGGL 124
Query: 114 PSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNA 173
P+ ++ +FK+YF++FG ITDVVVM D T RPRGFGFIT+DSE++V V+ ++FH+LN
Sbjct: 125 PANMSVEEFKRYFERFGRITDVVVMQDSLTHRPRGFGFITFDSEDSVQSVMMRSFHDLNG 184
Query: 174 KMVEVKRAVPKE 185
+ VEVKRAVP+E
Sbjct: 185 RQVEVKRAVPRE 196
>Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr6:438661-434987 | 20130731
Length = 383
Score = 164 bits (415), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 82/189 (43%), Positives = 119/189 (62%), Gaps = 13/189 (6%)
Query: 6 GKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIM 65
GK+FIGG++ +T ++FGKYGE+ + VIM+DR TG+ RGFGF+ +AD +V ++VI
Sbjct: 45 GKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIE 104
Query: 66 DKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKKY 125
D HII+ + VE K+ +PR TKKIFVGG+PS +TE +F+ +
Sbjct: 105 DSHIINSKQVEIKRTIPR------------GAVGSKDFRTKKIFVGGIPSNVTEDEFRDF 152
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFH-ELNAKMVEVKRAVPK 184
F ++G + D +M DH+T R RGFGF+T+D+EEAVD +L E VE+K+A PK
Sbjct: 153 FTRYGEVKDHQIMRDHSTNRSRGFGFVTFDTEEAVDDLLSMGNKIEFAGTQVEIKKAEPK 212
Query: 185 ELSPDPNRS 193
+ + P S
Sbjct: 213 KANAPPPSS 221
>Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:37290152-37292326 | 20130731
Length = 352
Score = 157 bits (396), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 75/181 (41%), Positives = 120/181 (66%), Gaps = 13/181 (7%)
Query: 6 GKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIM 65
GK+FIGG++ DT E +YF +YGE+ + VIM+DR TGR RGFGF+ +AD++V ++VI
Sbjct: 18 GKIFIGGLAKDTTLEEFVKYFERYGEITDSVIMKDRHTGRPRGFGFITYADASVVDQVIQ 77
Query: 66 DKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKKY 125
+ HII+ + VE K+ +P+ Q + + TKKIFVGG+P+T++E + K +
Sbjct: 78 ENHIINDKQVEIKRTIPKGASQTNDFK------------TKKIFVGGIPATVSEDELKIF 125
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYK-TFHELNAKMVEVKRAVPK 184
F + G + + ++ DH T+R RGFGF+ +DS++AVD +L +++ VE+K+A PK
Sbjct: 126 FSKHGNVVEHEIIRDHTTKRSRGFGFVVFDSDKAVDNLLADGNMIDMDDTQVEIKKAEPK 185
Query: 185 E 185
+
Sbjct: 186 K 186
>Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 373
Score = 135 bits (340), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 114/199 (57%), Gaps = 13/199 (6%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
KL + GI WD + E LKEY KYGE+ + ++M++R TGR+RGFG+V FA A+ V+
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSG 64
Query: 67 KHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKKYF 126
+H++ R +E K A P+++ + ++ +IFV +P ++TE F+ +F
Sbjct: 65 EHVLGDRMLEVKVATPKEEMRAPAKK------------VTRIFVARIPPSVTEETFRSHF 112
Query: 127 DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEVKRAVPKEL 186
+++G ITD+ + D ++ RG GFIT+ + E+V+ ++ +T HEL V V RA PKE
Sbjct: 113 EKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSET-HELGGSAVVVDRATPKED 171
Query: 187 SPDPNRSPLIGYNYGLNRA 205
P G YG A
Sbjct: 172 DVKPTGRMSQGGGYGAYNA 190
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 88/210 (41%), Gaps = 34/210 (16%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
++F+ I EE + +F KYG++ ++ + +D+ + RG GF+ F ++ E ++ +
Sbjct: 93 RIFVARIPPSVTEETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSE 152
Query: 67 KHIIDGRTVEAKKAVPR-DDQQNVNRQXX------------------------------- 94
H + G V +A P+ DD + R
Sbjct: 153 THELGGSAVVVDRATPKEDDVKPTGRMSQGGGYGAYNAYISTATRYAALGAPTLYDHPGP 212
Query: 95 -XXXXXXXXXXTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
+KKIFVG LP D ++YF +FG I DV + D RGFGF+T
Sbjct: 213 IYGRGEPRRRISKKIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVT 272
Query: 154 YDSEEAVDKVLYKTFHELNAKMVEVKRAVP 183
+ E D+V + HE+ V + A P
Sbjct: 273 FADEGVADRVSLRP-HEICGHEVAIDSATP 301
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 48/81 (59%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
K+F+G + + N E L++YFG++G + +V I RD RGFGFV FAD VA+RV +
Sbjct: 226 KIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADRVSLR 285
Query: 67 KHIIDGRTVEAKKAVPRDDQQ 87
H I G V A P DD +
Sbjct: 286 PHEICGHEVAIDSATPVDDAR 306
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 106 KKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLY 165
+K+ V G+P + K+Y ++G + D +VM + +T R RGFG++T+ S + +VL
Sbjct: 4 RKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLS 63
Query: 166 KTFHELNAKMVEVKRAVPKE 185
H L +M+EVK A PKE
Sbjct: 64 GE-HVLGDRMLEVKVATPKE 82
>Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 135 bits (340), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 114/199 (57%), Gaps = 13/199 (6%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
KL + GI WD + E LKEY KYGE+ + ++M++R TGR+RGFG+V FA A+ V+
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSG 64
Query: 67 KHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKKYF 126
+H++ R +E K A P+++ + ++ +IFV +P ++TE F+ +F
Sbjct: 65 EHVLGDRMLEVKVATPKEEMRAPAKK------------VTRIFVARIPPSVTEETFRSHF 112
Query: 127 DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEVKRAVPKEL 186
+++G ITD+ + D ++ RG GFIT+ + E+V+ ++ +T HEL V V RA PKE
Sbjct: 113 EKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSET-HELGGSAVVVDRATPKED 171
Query: 187 SPDPNRSPLIGYNYGLNRA 205
P G YG A
Sbjct: 172 DVKPTGRMSQGGGYGAYNA 190
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 88/210 (41%), Gaps = 34/210 (16%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
++F+ I EE + +F KYG++ ++ + +D+ + RG GF+ F ++ E ++ +
Sbjct: 93 RIFVARIPPSVTEETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSE 152
Query: 67 KHIIDGRTVEAKKAVPR-DDQQNVNRQXX------------------------------- 94
H + G V +A P+ DD + R
Sbjct: 153 THELGGSAVVVDRATPKEDDVKPTGRMSQGGGYGAYNAYISTATRYAALGAPTLYDHPGP 212
Query: 95 -XXXXXXXXXXTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
+KKIFVG LP D ++YF +FG I DV + D RGFGF+T
Sbjct: 213 IYGRGEPRRRISKKIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVT 272
Query: 154 YDSEEAVDKVLYKTFHELNAKMVEVKRAVP 183
+ E D+V + HE+ V + A P
Sbjct: 273 FADEGVADRVSLRP-HEICGHEVAIDSATP 301
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 48/81 (59%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
K+F+G + + N E L++YFG++G + +V I RD RGFGFV FAD VA+RV +
Sbjct: 226 KIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADRVSLR 285
Query: 67 KHIIDGRTVEAKKAVPRDDQQ 87
H I G V A P DD +
Sbjct: 286 PHEICGHEVAIDSATPVDDAR 306
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 106 KKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLY 165
+K+ V G+P + K+Y ++G + D +VM + +T R RGFG++T+ S + +VL
Sbjct: 4 RKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLS 63
Query: 166 KTFHELNAKMVEVKRAVPKE 185
H L +M+EVK A PKE
Sbjct: 64 GE-HVLGDRMLEVKVATPKE 82
>Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 135 bits (340), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 114/199 (57%), Gaps = 13/199 (6%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
KL + GI WD + E LKEY KYGE+ + ++M++R TGR+RGFG+V FA A+ V+
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSG 64
Query: 67 KHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKKYF 126
+H++ R +E K A P+++ + ++ +IFV +P ++TE F+ +F
Sbjct: 65 EHVLGDRMLEVKVATPKEEMRAPAKK------------VTRIFVARIPPSVTEETFRSHF 112
Query: 127 DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEVKRAVPKEL 186
+++G ITD+ + D ++ RG GFIT+ + E+V+ ++ +T HEL V V RA PKE
Sbjct: 113 EKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSET-HELGGSAVVVDRATPKED 171
Query: 187 SPDPNRSPLIGYNYGLNRA 205
P G YG A
Sbjct: 172 DVKPTGRMSQGGGYGAYNA 190
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 88/210 (41%), Gaps = 34/210 (16%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
++F+ I EE + +F KYG++ ++ + +D+ + RG GF+ F ++ E ++ +
Sbjct: 93 RIFVARIPPSVTEETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSE 152
Query: 67 KHIIDGRTVEAKKAVPR-DDQQNVNRQXX------------------------------- 94
H + G V +A P+ DD + R
Sbjct: 153 THELGGSAVVVDRATPKEDDVKPTGRMSQGGGYGAYNAYISTATRYAALGAPTLYDHPGP 212
Query: 95 -XXXXXXXXXXTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
+KKIFVG LP D ++YF +FG I DV + D RGFGF+T
Sbjct: 213 IYGRGEPRRRISKKIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVT 272
Query: 154 YDSEEAVDKVLYKTFHELNAKMVEVKRAVP 183
+ E D+V + HE+ V + A P
Sbjct: 273 FADEGVADRVSLRP-HEICGHEVAIDSATP 301
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 48/81 (59%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
K+F+G + + N E L++YFG++G + +V I RD RGFGFV FAD VA+RV +
Sbjct: 226 KIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADRVSLR 285
Query: 67 KHIIDGRTVEAKKAVPRDDQQ 87
H I G V A P DD +
Sbjct: 286 PHEICGHEVAIDSATPVDDAR 306
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 106 KKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLY 165
+K+ V G+P + K+Y ++G + D +VM + +T R RGFG++T+ S + +VL
Sbjct: 4 RKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLS 63
Query: 166 KTFHELNAKMVEVKRAVPKE 185
H L +M+EVK A PKE
Sbjct: 64 GE-HVLGDRMLEVKVATPKE 82
>Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 397
Score = 135 bits (340), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 114/199 (57%), Gaps = 13/199 (6%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
KL + GI WD + E LKEY KYGE+ + ++M++R TGR+RGFG+V FA A+ V+
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSG 64
Query: 67 KHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKKYF 126
+H++ R +E K A P+++ + ++ +IFV +P ++TE F+ +F
Sbjct: 65 EHVLGDRMLEVKVATPKEEMRAPAKK------------VTRIFVARIPPSVTEETFRSHF 112
Query: 127 DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEVKRAVPKEL 186
+++G ITD+ + D ++ RG GFIT+ + E+V+ ++ +T HEL V V RA PKE
Sbjct: 113 EKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSET-HELGGSAVVVDRATPKED 171
Query: 187 SPDPNRSPLIGYNYGLNRA 205
P G YG A
Sbjct: 172 DVKPTGRMSQGGGYGAYNA 190
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 88/210 (41%), Gaps = 34/210 (16%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
++F+ I EE + +F KYG++ ++ + +D+ + RG GF+ F ++ E ++ +
Sbjct: 93 RIFVARIPPSVTEETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSE 152
Query: 67 KHIIDGRTVEAKKAVPR-DDQQNVNRQXX------------------------------- 94
H + G V +A P+ DD + R
Sbjct: 153 THELGGSAVVVDRATPKEDDVKPTGRMSQGGGYGAYNAYISTATRYAALGAPTLYDHPGP 212
Query: 95 -XXXXXXXXXXTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
+KKIFVG LP D ++YF +FG I DV + D RGFGF+T
Sbjct: 213 IYGRGEPRRRISKKIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVT 272
Query: 154 YDSEEAVDKVLYKTFHELNAKMVEVKRAVP 183
+ E D+V + HE+ V + A P
Sbjct: 273 FADEGVADRVSLRP-HEICGHEVAIDSATP 301
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 48/81 (59%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
K+F+G + + N E L++YFG++G + +V I RD RGFGFV FAD VA+RV +
Sbjct: 226 KIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADRVSLR 285
Query: 67 KHIIDGRTVEAKKAVPRDDQQ 87
H I G V A P DD +
Sbjct: 286 PHEICGHEVAIDSATPVDDAR 306
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 106 KKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLY 165
+K+ V G+P + K+Y ++G + D +VM + +T R RGFG++T+ S + +VL
Sbjct: 4 RKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLS 63
Query: 166 KTFHELNAKMVEVKRAVPKE 185
H L +M+EVK A PKE
Sbjct: 64 GE-HVLGDRMLEVKVATPKE 82
>Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:22547309-22542060 | 20130731
Length = 445
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 104/249 (41%), Gaps = 25/249 (10%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVF--ADSAVAERVI 64
KLFI G+ WDT E L+ F YGE+ E +++ D+ TG+++G+GFV F D A+
Sbjct: 74 KLFIRGLGWDTTTEGLRSLFSTYGELEEAIVIVDKATGKSKGYGFVTFLHVDGALLALRE 133
Query: 65 MDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKK 124
K IDGR + A + N N +KI+V +P +
Sbjct: 134 PSKR-IDGRVTVTQLAAAGNSGSNTN---------AADVAQRKIYVSNVPPDLPGDKLLA 183
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEVKRAVPK 184
+F +G I + + +D T R +GF Y + E + + + + + + K A+
Sbjct: 184 HFSIYGEIEEGPLGFDKQTGRSKGFALFVYKTPEGANAAVSEPVKNVEGRQLNCKLAI-- 241
Query: 185 ELSPDPNRSPLIGYNYGLNRASSYLNIYAQGYSMSPIGG-----HGVRMN-GRFSPLTSV 238
+ G G + A N + G M+P G +G + G + ++
Sbjct: 242 -----TDGGKQQGMRGGPDGAQGRGNAHGNGLGMAPAAGSASGQYGASVGMGSYGGFSAG 296
Query: 239 RTGFSPFGN 247
G P GN
Sbjct: 297 HQGQPPMGN 305
>Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr4:34502474-34498575 | 20130731
Length = 356
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 94/193 (48%), Gaps = 17/193 (8%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
KLF+ G+S +T E L+ F YG++ E +++ D+ TGR++G+GFVV+
Sbjct: 77 KLFVRGLSGETTTETLRTVFSSYGDLDEAIVIFDKATGRSKGYGFVVY------------ 124
Query: 67 KHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKKYF 126
+H +DG + K+ + D + Q ++K+FVG +P ++ F
Sbjct: 125 RH-VDGAVLALKEPSKKIDGRMTVTQLAAAGSTGGDVSSRKVFVGNVPFEVSAESLLSEF 183
Query: 127 DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEVKRAV---- 182
++G I + + +D + + RGF F Y +EE + ++ ++ V K AV
Sbjct: 184 SKYGEIEEGPLGFDKASGKTRGFAFFVYKTEEGAKNSVAESMKTVDGHQVICKFAVDNKK 243
Query: 183 PKELSPDPNRSPL 195
PK + +P+ P+
Sbjct: 244 PKPVGQNPSGFPV 256
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 85/180 (47%), Gaps = 15/180 (8%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYG--EVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI 64
K+F+G + +D + E L + F + G E+ EV+ RD T R+RGFGFV + S ER +
Sbjct: 123 KIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRD--TDRSRGFGFVTMSTSEEVERAV 180
Query: 65 --MDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDF 122
+DGR + KA PR + RQ + +VG LP + S
Sbjct: 181 NKFSGFELDGRLLTVNKAAPRGTPRL--RQPRTFNSGL------RAYVGNLPWDVDNSSL 232
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE-EAVDKVLYKTFHELNAKMVEVKRA 181
++ F + G + V+YD T R RGFGF+T +E E D + N + + V A
Sbjct: 233 EQLFSEHGKVESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAALDGQSFNGRAIRVNVA 292
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYK 166
KIFVG LP + + F+Q GT+ V+Y+ +T R RGFGF+T + E V++ + K
Sbjct: 123 KIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERAVNK 182
Query: 167 -TFHELNAKMVEVKRAVPK 184
+ EL+ +++ V +A P+
Sbjct: 183 FSGFELDGRLLTVNKAAPR 201
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
+ ++G + WD + L++ F ++G+V ++ DR TGR+RGFGFV ++ A I
Sbjct: 217 RAYVGNLPWDVDNSSLEQLFSEHGKVESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAA 276
Query: 65 MDKHIIDGRTVEAKKAVPR 83
+D +GR + A R
Sbjct: 277 LDGQSFNGRAIRVNVAEER 295
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 52/79 (65%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
KLFIGG+S+ T+E L+E F +YG+V++ I+ DR TGR+RGFGF+ FA S A +
Sbjct: 41 KLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 65 MDKHIIDGRTVEAKKAVPR 83
MD +DGRTV A R
Sbjct: 101 MDNKELDGRTVRVNYATER 119
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 105 TKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITY-DSEEAVDKV 163
+ K+F+GG+ + E+ ++ F ++G + D ++ D +T R RGFGFIT+ SEEA +
Sbjct: 39 SAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSAL 98
Query: 164 LYKTFHELNAKMVEVKRAVPK 184
EL+ + V V A +
Sbjct: 99 QAMDNKELDGRTVRVNYATER 119
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 52/79 (65%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
KLFIGG+S+ T+E L+E F +YG+V++ I+ DR TGR+RGFGF+ FA S A +
Sbjct: 41 KLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 65 MDKHIIDGRTVEAKKAVPR 83
MD +DGRTV A R
Sbjct: 101 MDNKELDGRTVRVNYATER 119
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 105 TKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITY-DSEEAVDKV 163
+ K+F+GG+ + E+ ++ F ++G + D ++ D +T R RGFGFIT+ SEEA +
Sbjct: 39 SAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSAL 98
Query: 164 LYKTFHELNAKMVEVKRAVPK 184
EL+ + V V A +
Sbjct: 99 QAMDNKELDGRTVRVNYATER 119
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 97/210 (46%), Gaps = 8/210 (3%)
Query: 4 DLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERV 63
D G+L++G + + L + F + G V+ V I+ DRLT R+RGF FV + A+
Sbjct: 107 DAGRLYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAFVTMKSAEEAKEA 166
Query: 64 I--MDKHIIDGRTVEAK-KAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITES 120
I D + GR+ + VP+ ++ V Q KI+ G L +
Sbjct: 167 IRMFDGSQVGGRSAKVNFPEVPKGGERLVMGQKVRNSYRGFVDSPHKIYAGNLGWGMNSQ 226
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFH-ELNAKMVEVK 179
D + FD+ + ++Y+ + R RGFGF+T+++ E ++ L E+ + + +
Sbjct: 227 DLRDAFDEQPGLLGAKIIYERDNGRSRGFGFVTFETAEHLEAALNAMNGVEVQGRPLRLN 286
Query: 180 RAVPKELSPDPNRSPLIGYNYGLNRASSYL 209
A + SP P P+I N N SS L
Sbjct: 287 LAAAR-TSPSP---PVIEENTKNNIESSEL 312
>Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr4:12141158-12149871 | 20130731
Length = 267
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
K+F+GG++W+T +E +K+YF ++GE++E V++ D+ TGR++G+GFV F + A R +D
Sbjct: 17 KVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRACVD 76
Query: 67 KH-IIDGRTVEAKKA 80
IIDGR A
Sbjct: 77 AAPIIDGRRANCNLA 91
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
K+FVGGL + KKYF+QFG I + VV+ D T R +G+GF+T+ +A +
Sbjct: 17 KVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRAC 74
>Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 76/177 (42%), Gaps = 6/177 (3%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-M 65
K+F+ G+ WD E L F KYGE+ + + D+ +G+++G+ F++F R +
Sbjct: 166 KIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCRRALKQ 225
Query: 66 DKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKKY 125
+ +I RT + A +KIFV + S I ++
Sbjct: 226 PQKVIGNRTTSCQLA-----SAGPVPAPPPNAPPVSEYTQRKIFVSNVSSDIDPQKLLEF 280
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEVKRAV 182
F QFG + D + D T +P+GF Y + E+ K L + + ++AV
Sbjct: 281 FKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEEPNKVFEGHTLYCQKAV 337
>Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 76/177 (42%), Gaps = 6/177 (3%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-M 65
K+F+ G+ WD E L F KYGE+ + + D+ +G+++G+ F++F R +
Sbjct: 166 KIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCRRALKQ 225
Query: 66 DKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKKY 125
+ +I RT + A +KIFV + S I ++
Sbjct: 226 PQKVIGNRTTSCQLA-----SAGPVPAPPPNAPPVSEYTQRKIFVSNVSSDIDPQKLLEF 280
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEVKRAV 182
F QFG + D + D T +P+GF Y + E+ K L + + ++AV
Sbjct: 281 FKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEEPNKVFEGHTLYCQKAV 337
>Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 76/177 (42%), Gaps = 6/177 (3%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-M 65
K+F+ G+ WD E L F KYGE+ + + D+ +G+++G+ F++F R +
Sbjct: 166 KIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCRRALKQ 225
Query: 66 DKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKKY 125
+ +I RT + A +KIFV + S I ++
Sbjct: 226 PQKVIGNRTTSCQLA-----SAGPVPAPPPNAPPVSEYTQRKIFVSNVSSDIDPQKLLEF 280
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEVKRAV 182
F QFG + D + D T +P+GF Y + E+ K L + + ++AV
Sbjct: 281 FKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEEPNKVFEGHTLYCQKAV 337
>Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr4:12141158-12149871 | 20130731
Length = 272
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
K+F+GG++W+T +E +K+YF ++GE++E V++ D+ TGR++G+GFV F + A R +D
Sbjct: 17 KVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRACVD 76
Query: 67 KH-IIDGRTVEAKKA 80
IIDGR A
Sbjct: 77 AAPIIDGRRANCNLA 91
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
K+FVGGL + KKYF+QFG I + VV+ D T R +G+GF+T+ +A +
Sbjct: 17 KVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRAC 74
>Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9035953-9039164 | 20130731
Length = 282
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 2 ESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAE 61
++ KLF+GG++W+T E ++ YF ++GE++E V++ D+ TGR++G+GFV F D A
Sbjct: 21 DTTFTKLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAI 80
Query: 62 RVIMDKH-IIDGRTVEAKKA 80
R + +IDGR A
Sbjct: 81 RACQNPSPVIDGRRANCNIA 100
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
K+FVGGL + YF+QFG I + VV+ D T R +G+GF+T+ EA +
Sbjct: 26 KLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAIRAC 83
>Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9035953-9039164 | 20130731
Length = 280
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 2 ESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAE 61
++ KLF+GG++W+T E ++ YF ++GE++E V++ D+ TGR++G+GFV F D A
Sbjct: 21 DTTFTKLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAI 80
Query: 62 RVIMDKH-IIDGRTVEAKKA 80
R + +IDGR A
Sbjct: 81 RACQNPSPVIDGRRANCNIA 100
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
K+FVGGL + YF+QFG I + VV+ D T R +G+GF+T+ EA +
Sbjct: 26 KLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAIRAC 83
>Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr7:48649576-48651271 | 20130731
Length = 253
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 2 ESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAE 61
++ L K+F+GG++W+T ++ L+E+F KYG+++E VI+ D++TGR++G+GFV F D+ A+
Sbjct: 14 DTTLTKVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDADSAK 73
Query: 62 RVIMDKH-IIDGRTVEAKKA 80
+ + II+GR A
Sbjct: 74 KACEEPTVIINGRRANCNIA 93
>Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr7:48649613-48651189 | 20130731
Length = 256
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 2 ESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAE 61
++ L K+F+GG++W+T ++ L+E+F KYG+++E VI+ D++TGR++G+GFV F D+ A+
Sbjct: 14 DTTLTKVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDADSAK 73
Query: 62 RVIMDKH-IIDGRTVEAKKA 80
+ + II+GR A
Sbjct: 74 KACEEPTVIINGRRANCNIA 93
>Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:54301450-54296178 | 20130731
Length = 281
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
K+F+GG++W+T E ++ YF ++G+++E V++ D+ TGR++G+GFV F D A R D
Sbjct: 30 KVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 89
Query: 67 KH-IIDGRTVEAKKA 80
+IDGR A
Sbjct: 90 PSPVIDGRRANCNLA 104
>Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr5:26612934-26618708 | 20130731
Length = 283
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Query: 2 ESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAE 61
++ K+F+GG++W+T + ++ YF ++G+++E VI+ D+ TG+++G+GFV F D A
Sbjct: 12 DTTFTKVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESAR 71
Query: 62 RVIMDKH-IIDGR 73
R D + +IDGR
Sbjct: 72 RACADPNPVIDGR 84
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
K+FVGGL + + YF+QFG I + V++ D NT + +G+GF+T+ E+ +
Sbjct: 17 KVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRAC 74
>Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:54300708-54296502 | 20130731
Length = 372
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
K+F+GG++W+T E ++ YF ++G+++E V++ D+ TGR++G+GFV F D A R D
Sbjct: 30 KVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 89
Query: 67 KH-IIDGRTVEAKKA 80
+IDGR A
Sbjct: 90 PSPVIDGRRANCNLA 104
>Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253164 | 20130731
Length = 250
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 2 ESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAE 61
++ K+F+GG++W+T + LK YF ++G+++E V++ DR TG+++G+GFV F D A
Sbjct: 22 DTTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAI 81
Query: 62 RVIMDKH-IIDGRTVEAKKAVPRDDQQNVNRQ 92
+ + +IDGR A + D +Q
Sbjct: 82 LACQNPNPMIDGRRANCNLAYQKPDPSLTGKQ 113
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITY-DSEEAV 160
KIFVGGL K+YFDQFG I + VV+ D T + +G+GF+T+ D A+
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAI 81
>Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251226-42253109 | 20130731
Length = 251
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 2 ESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAE 61
++ K+F+GG++W+T + LK YF ++G+++E V++ DR TG+++G+GFV F D A
Sbjct: 22 DTTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAI 81
Query: 62 RVIMDKH-IIDGRTVEAKKAVPRDDQQNVNRQ 92
+ + +IDGR A + D +Q
Sbjct: 82 LACQNPNPMIDGRRANCNLAYQKPDPSLTGKQ 113
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITY-DSEEAV 160
KIFVGGL K+YFDQFG I + VV+ D T + +G+GF+T+ D A+
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAI 81
>Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
K+F+GG++W+T + LK YF ++G+++E V++ DR TG+++G+GFV F D A +
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQN 86
Query: 67 KH-IIDGRTVEAKKAVPRDDQQNVNRQ 92
+ +IDGR A + D +Q
Sbjct: 87 PNPMIDGRRANCNLAYQKPDPSLTGKQ 113
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITY-DSEEAV 160
KIFVGGL K+YFDQFG I + VV+ D T + +G+GF+T+ D A+
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAI 81
>Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
K+F+GG++W+T + LK YF ++G+++E V++ DR TG+++G+GFV F D A +
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQN 86
Query: 67 KH-IIDGRTVEAKKAVPRDDQQNVNRQ 92
+ +IDGR A + D +Q
Sbjct: 87 PNPMIDGRRANCNLAYQKPDPSLTGKQ 113
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITY-DSEEAV 160
KIFVGGL K+YFDQFG I + VV+ D T + +G+GF+T+ D A+
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAI 81
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 79/179 (44%), Gaps = 8/179 (4%)
Query: 6 GKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI- 64
KLF+G +D + E L FG+ G V ++ +R T +RGFGFV + AE +
Sbjct: 109 AKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVE 168
Query: 65 -MDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFK 123
+ + +GR++ KA P+ +R +I+V L + S +
Sbjct: 169 KFNGYDYNGRSLVVNKASPKG-----SRPERTERAPRTFEPVLRIYVANLAWEVDNSRLE 223
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITY-DSEEAVDKVLYKTFHELNAKMVEVKRA 181
+ F + G I V+YD T R RGFGF+T D E D + L + + V A
Sbjct: 224 QVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLEGRTIRVSVA 282
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
++++ ++W+ + L++ F ++G+++ ++ DR TGR+RGFGFV +D I
Sbjct: 207 RIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAA 266
Query: 65 MDKHIIDGRTVEAKKAVPR 83
+D ++GRT+ A R
Sbjct: 267 LDGQSLEGRTIRVSVAEDR 285
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 74/161 (45%), Gaps = 7/161 (4%)
Query: 6 GKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI- 64
KLF+G +D + E L FG+ G V ++ +R T +RGFGFV + AE +
Sbjct: 109 AKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVE 168
Query: 65 -MDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFK 123
+ + +GR++ KA P+ +R +I+V L + S +
Sbjct: 169 KFNGYDYNGRSLVVNKASPKG-----SRPERTERAPRTFEPVLRIYVANLAWEVDNSRLE 223
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
+ F + G I V+YD T R RGFGF+T E ++ +
Sbjct: 224 QVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAI 264
>Medtr7g088140.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297881 | 20130731
Length = 490
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 79/179 (44%), Gaps = 3/179 (1%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
K+F+ G+ WDT L F +YGE+ + + D+++G+++G+GF++F + A + +
Sbjct: 128 KIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKE 187
Query: 67 KHIIDGRTVEAKKAV---PRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFK 123
G + A + P V +KI++ + +
Sbjct: 188 PQKKIGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDAQKLF 247
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEVKRAV 182
+F +FG I + + D T +P+GF Y S E+ + L + E ++ ++A+
Sbjct: 248 GFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHILHCQKAI 306
>Medtr7g088140.5 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297914 | 20130731
Length = 490
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 79/179 (44%), Gaps = 3/179 (1%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
K+F+ G+ WDT L F +YGE+ + + D+++G+++G+GF++F + A + +
Sbjct: 128 KIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKE 187
Query: 67 KHIIDGRTVEAKKAV---PRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFK 123
G + A + P V +KI++ + +
Sbjct: 188 PQKKIGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDAQKLF 247
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEVKRAV 182
+F +FG I + + D T +P+GF Y S E+ + L + E ++ ++A+
Sbjct: 248 GFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHILHCQKAI 306
>Medtr7g088140.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297914 | 20130731
Length = 490
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 79/179 (44%), Gaps = 3/179 (1%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
K+F+ G+ WDT L F +YGE+ + + D+++G+++G+GF++F + A + +
Sbjct: 128 KIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKE 187
Query: 67 KHIIDGRTVEAKKAV---PRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFK 123
G + A + P V +KI++ + +
Sbjct: 188 PQKKIGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDAQKLF 247
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEVKRAV 182
+F +FG I + + D T +P+GF Y S E+ + L + E ++ ++A+
Sbjct: 248 GFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHILHCQKAI 306
>Medtr7g088140.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297881 | 20130731
Length = 490
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 79/179 (44%), Gaps = 3/179 (1%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
K+F+ G+ WDT L F +YGE+ + + D+++G+++G+GF++F + A + +
Sbjct: 128 KIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKE 187
Query: 67 KHIIDGRTVEAKKAV---PRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFK 123
G + A + P V +KI++ + +
Sbjct: 188 PQKKIGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDAQKLF 247
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEVKRAV 182
+F +FG I + + D T +P+GF Y S E+ + L + E ++ ++A+
Sbjct: 248 GFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHILHCQKAI 306
>Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 85/189 (44%), Gaps = 15/189 (7%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVF--ADSAVAERVI 64
+LF+G + + + L E F G+V V ++ D+ TGR+RGFGFV A A
Sbjct: 85 RLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQ 144
Query: 65 MDKHIIDGRTVEAKKAVPRDDQQNVNR----------QXXXXXXXXXXXXTKKIFVGGLP 114
++ +++DGR + P + +R + ++ VG L
Sbjct: 145 LNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHVGNLA 204
Query: 115 STITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFH--ELN 172
+ + F + G + + V+YD + R RGFGF+T+ S + VD + +T +LN
Sbjct: 205 WGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAI-RTLDGADLN 263
Query: 173 AKMVEVKRA 181
+ + V A
Sbjct: 264 GRAIRVSPA 272
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
++ +G ++W + L+ FG+ G+V+E ++ DR +GR+RGFGFV F+ + + I
Sbjct: 197 RVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRT 256
Query: 65 MDKHIIDGRTVEAKKAVPRDDQQ 87
+D ++GR + A R +Q
Sbjct: 257 LDGADLNGRAIRVSPADSRPKRQ 279
>Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 85/189 (44%), Gaps = 15/189 (7%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVF--ADSAVAERVI 64
+LF+G + + + L E F G+V V ++ D+ TGR+RGFGFV A A
Sbjct: 85 RLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQ 144
Query: 65 MDKHIIDGRTVEAKKAVPRDDQQNVNR----------QXXXXXXXXXXXXTKKIFVGGLP 114
++ +++DGR + P + +R + ++ VG L
Sbjct: 145 LNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHVGNLA 204
Query: 115 STITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFH--ELN 172
+ + F + G + + V+YD + R RGFGF+T+ S + VD + +T +LN
Sbjct: 205 WGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAI-RTLDGADLN 263
Query: 173 AKMVEVKRA 181
+ + V A
Sbjct: 264 GRAIRVSPA 272
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
++ +G ++W + L+ FG+ G+V+E ++ DR +GR+RGFGFV F+ + + I
Sbjct: 197 RVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRT 256
Query: 65 MDKHIIDGRTVEAKKAVPRDDQQ 87
+D ++GR + A R +Q
Sbjct: 257 LDGADLNGRAIRVSPADSRPKRQ 279
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
KLFIGG+S+ T+E L+E F +YGEV++ I+ DR TGR+RGFGF+ F A I
Sbjct: 43 KLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQA 102
Query: 65 MDKHIIDGRTVEAKKAVPR 83
+D + GR V A R
Sbjct: 103 LDGQDLHGRRVRVNYANER 121
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 105 TKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDKV 163
T K+F+GG+ + E+ ++ F ++G + D ++ D T R RGFGFIT++S EEA +
Sbjct: 41 TTKLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAI 100
Query: 164 LYKTFHELNAKMVEVKRA 181
+L+ + V V A
Sbjct: 101 QALDGQDLHGRRVRVNYA 118
>Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031900 | 20130731
Length = 479
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 76/151 (50%), Gaps = 24/151 (15%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
++FIGG+ DT+++ ++E G+++E+ +++DR TG ++G+ FV + VA++ I D
Sbjct: 105 EVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDD 164
Query: 67 KHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTK-KIFVGGLPSTITESDFKKY 125
H N++ TK ++F+G +P T TE +F+K
Sbjct: 165 IH---------------------NKEFKGKTLRCLLSETKHRLFIGNIPKTWTEDEFRKA 203
Query: 126 FDQFGT-ITDVVVMYD-HNTQRPRGFGFITY 154
+ G + + ++ D N R RGF F+ Y
Sbjct: 204 VEGVGPGVESIDLIKDPQNQSRNRGFAFVLY 234
>Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031887 | 20130731
Length = 479
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 76/151 (50%), Gaps = 24/151 (15%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
++FIGG+ DT+++ ++E G+++E+ +++DR TG ++G+ FV + VA++ I D
Sbjct: 105 EVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDD 164
Query: 67 KHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTK-KIFVGGLPSTITESDFKKY 125
H N++ TK ++F+G +P T TE +F+K
Sbjct: 165 IH---------------------NKEFKGKTLRCLLSETKHRLFIGNIPKTWTEDEFRKA 203
Query: 126 FDQFGT-ITDVVVMYD-HNTQRPRGFGFITY 154
+ G + + ++ D N R RGF F+ Y
Sbjct: 204 VEGVGPGVESIDLIKDPQNQSRNRGFAFVLY 234
>Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025861-49031887 | 20130731
Length = 479
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 76/151 (50%), Gaps = 24/151 (15%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
++FIGG+ DT+++ ++E G+++E+ +++DR TG ++G+ FV + VA++ I D
Sbjct: 105 EVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDD 164
Query: 67 KHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTK-KIFVGGLPSTITESDFKKY 125
H N++ TK ++F+G +P T TE +F+K
Sbjct: 165 IH---------------------NKEFKGKTLRCLLSETKHRLFIGNIPKTWTEDEFRKA 203
Query: 126 FDQFGT-ITDVVVMYD-HNTQRPRGFGFITY 154
+ G + + ++ D N R RGF F+ Y
Sbjct: 204 VEGVGPGVESIDLIKDPQNQSRNRGFAFVLY 234
>Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| LC | chr4:26418780-26419998 | 20130731
Length = 164
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
+ F+GG++W T+ E L++ F +YGE+I+ I+ DR TGR+RGFGFV FAD I
Sbjct: 9 RCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEG 68
Query: 65 MDKHIIDGRTVEAKKA 80
M+ +DGR + +A
Sbjct: 69 MNGQDMDGRNITVNEA 84
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV-DKVLY 165
+ FVGGL +K F Q+G I D ++ D T R RGFGF+T+ E+++ D +
Sbjct: 9 RCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEG 68
Query: 166 KTFHELNAKMVEVKRA 181
+++ + + V A
Sbjct: 69 MNGQDMDGRNITVNEA 84
>Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:29411645-29406062 | 20130731
Length = 379
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)
Query: 9 FIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMDKH 68
++G + +EE L E F + G V+ V + +DR+T + +G+GFV F A+ I +
Sbjct: 28 YVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLN 87
Query: 69 IID--GRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKKYF 126
+I G+ + KA D+++++ +F+G L + E F
Sbjct: 88 MIKLYGKPIRVNKA--SQDKKSLD-------------VGANLFIGNLDPDVDEKLLYDTF 132
Query: 127 DQFGTI-TDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
FG I T+ +M D +T RGFGFI+YDS EA D +
Sbjct: 133 SAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAI 171
>Medtr4g122650.1 | flowering time control FCA-like protein | HC |
chr4:50587410-50576809 | 20130731
Length = 737
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 75/154 (48%), Gaps = 16/154 (10%)
Query: 4 DLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAE-- 61
+ KLF+G + EE ++ F ++G V+EV +++DR TG+ +G F+ +A S A+
Sbjct: 86 NFAKLFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQA 145
Query: 62 -RVIMDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITES 120
R + ++H + G + +++ + K+FVG L +
Sbjct: 146 IRALHNRHTLPGGVGPIQVRYADGERERLG------------AVEYKLFVGSLNKQASVK 193
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITY 154
+ ++ F ++G I DV +M D Q RG GF+ Y
Sbjct: 194 EVEEVFSKYGRIEDVYLMRDDQKQS-RGCGFVKY 226
>Medtr7g088140.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304246-34300290 | 20130731
Length = 492
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 79/179 (44%), Gaps = 3/179 (1%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
K+F+ G+ WDT L F +YGE+ + + D+++G+++G+GF++F + A + +
Sbjct: 128 KIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKE 187
Query: 67 KHIIDGRTVEAKKAV---PRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFK 123
G + A + P V +KI++ + +
Sbjct: 188 PQKKIGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDAQKLF 247
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEVKRAV 182
+F +FG I + + D T +P+GF Y S E+ + L + E ++ ++A+
Sbjct: 248 GFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHILHCQKAI 306
>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:36253866-36255120 | 20130731
Length = 135
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 53/79 (67%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFA--DSAVAERVI 64
KLF+GG+SW +E+ LK+ F +G+V EV I+ D+ +GRARGFGFV+F+ D+A + +
Sbjct: 37 KLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKDA 96
Query: 65 MDKHIIDGRTVEAKKAVPR 83
MD + GR + A+ +
Sbjct: 97 MDGKALLGRPLRINFALEK 115
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 36/54 (66%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV 160
K+FVGGL ++ E K F FG +T+V ++YD ++ R RGFGF+ + +E+A
Sbjct: 37 KLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAA 90
>Medtr1g019150.1 | polyadenylate-binding protein | HC |
chr1:5708406-5713691 | 20130731
Length = 647
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 17/180 (9%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMDK 67
+++ +S E+ LK FG YG + V+MRD GR++ FGFV F ++ A + +
Sbjct: 213 VYVKNLSESFTEDDLKNEFGAYGTITSAVLMRD-ADGRSKCFGFVNFENAEDAAKAV--- 268
Query: 68 HIIDGRTVE--------AKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITE 119
++G+ V+ A+K R+ + + +++ L +IT+
Sbjct: 269 EALNGKKVDDKEWYVGKAQKKSEREQELKGRFEQTVKESVVDKFQGLNLYLKNLDDSITD 328
Query: 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEVK 179
K+ F +FGTIT +M D N RG GF+ + + E + L E+N KM+ K
Sbjct: 329 EKLKEMFSEFGTITSYKIMRDPNGVS-RGSGFVAFSTPEEASRAL----GEMNGKMIVSK 383
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 83/180 (46%), Gaps = 18/180 (10%)
Query: 2 ESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAE 61
+S +FI + + + L + F +G+++ I D +G+++G+GFV F A+
Sbjct: 116 KSGTANIFIKNLDKTIDHKALHDTFSSFGQIMSCKIATDG-SGQSKGYGFVQFEAEDSAQ 174
Query: 62 RVI--MDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITE 119
I ++ +I+ + V + + D+ NV ++V L + TE
Sbjct: 175 NAIDKLNGMLINDKQVFVGHFLRKQDRDNV----------LSKTKFNNVYVKNLSESFTE 224
Query: 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEVK 179
D K F +GTIT V+M D + R + FGF+ +++ E K + LN K V+ K
Sbjct: 225 DDLKNEFGAYGTITSAVLMRDADG-RSKCFGFVNFENAEDAAKAV----EALNGKKVDDK 279
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 71/160 (44%), Gaps = 17/160 (10%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMDK 67
L++G + + N+ L + F + G+V+ V + RD T R+ G+G+V F + A
Sbjct: 34 LYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDA------- 86
Query: 68 HIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKKYFD 127
R ++ P ++ +++ T IF+ L TI F
Sbjct: 87 ----ARALDVLNFTPMNN-KSIRVMYSHRDPSSRKSGTANIFIKNLDKTIDHKALHDTFS 141
Query: 128 QFGTITDVVVMYDHNTQRPRGFGFITYDSEE----AVDKV 163
FG I + D + Q +G+GF+ +++E+ A+DK+
Sbjct: 142 SFGQIMSCKIATDGSGQS-KGYGFVQFEAEDSAQNAIDKL 180
>Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC |
chr4:55111286-55115662 | 20130731
Length = 411
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 102/252 (40%), Gaps = 55/252 (21%)
Query: 8 LFIGGISWDTNEEHLKEYF-GKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
+F+G ++ D ++ HL E F +Y V ++ DR TGR +G+GFV FAD + R + +
Sbjct: 169 IFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAMTE 228
Query: 67 KH-----------------IIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIF 109
+ +T +A P+ QN N IF
Sbjct: 229 MQGVLCSTRPMRIGPASNKNLGTQTSKASYQNPQGGAQNEN-----------DPNNTTIF 277
Query: 110 VGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRG--FGFITY----DSEEAVDKV 163
VG L +T+ K+ F Q+G + V + P G GF+ + +EEA+ +
Sbjct: 278 VGNLDPNVTDEHLKQVFTQYGELVHVKI--------PSGKRCGFVQFADRSSAEEALRVL 329
Query: 164 LYKTFHELNAKMVEVKRAVPKELSPDPNRSPLIGYNYGLNRASSYLNIYAQG---YSMSP 220
N ++ + K+ DPN+ N +SSY YAQG Y+ +P
Sbjct: 330 NGTLLGGQNVRLSWGRSPANKQTQQDPNQ---------WNGSSSYFGGYAQGYENYAYAP 380
Query: 221 IGGHGVRMNGRF 232
G M G +
Sbjct: 381 PAGQDPNMYGSY 392
>Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| LC | chr4:26374538-26375597 | 20130731
Length = 128
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
+ F+GG++W T+ E L++ F +YGE+++ I+ DR TGR+RGFGFV FA+ I
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 66
Query: 65 MDKHIIDGRTVEAKKA 80
M+ +DGR + +A
Sbjct: 67 MNGQDLDGRNITVNQA 82
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV-DKVLY 165
+ FVGGL +K F Q+G I D ++ D T R RGFGF+T+ +E+++ D +
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 66
Query: 166 KTFHELNAKMVEVKRA 181
+L+ + + V +A
Sbjct: 67 MNGQDLDGRNITVNQA 82
>Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| LC | chr4:26374412-26375716 | 20130731
Length = 161
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
+ F+GG++W T+ E L++ F +YGE+++ I+ DR TGR+RGFGFV FA+ I
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 66
Query: 65 MDKHIIDGRTVEAKKA 80
M+ +DGR + +A
Sbjct: 67 MNGQDLDGRNITVNQA 82
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV-DKVLY 165
+ FVGGL +K F Q+G I D ++ D T R RGFGF+T+ +E+++ D +
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 66
Query: 166 KTFHELNAKMVEVKRA 181
+L+ + + V +A
Sbjct: 67 MNGQDLDGRNITVNQA 82
>Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3990787-3988732 | 20130731
Length = 148
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 6 GKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI- 64
KL++GGIS+ T++ L+E F +YG+V++ ++ DR GR++GFGFV FA S A +
Sbjct: 40 AKLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVTFATSEEASAALQ 99
Query: 65 -MDKHIIDGRTVEAKKAVPR 83
MD + GRTV A R
Sbjct: 100 AMDNQELHGRTVRVNYAQER 119
>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700218-24705084 | 20130731
Length = 311
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
+LF+G + + + L + FG+ G V+ V I+ D +T R+RGF FV + AE I
Sbjct: 109 RLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRM 168
Query: 65 MDKHIIDGRTVEAK-KAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFK 123
D + GR ++ VP + R KI+ G L +T +
Sbjct: 169 FDGTTVGGRAIKVNFPEVPIVGK----RVQMGSTYRGYVDSPHKIYAGNLGWDMTSQYLR 224
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
K F + + V+Y+ N + RG+GF+++++ E V+ L
Sbjct: 225 KAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVAL 265
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 105 TKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITY----DSEEAV 160
++++FVG LP +++ S + F + G + V ++YD T R RGF F+T D+EEA+
Sbjct: 107 SRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAI 166
>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700221-24703822 | 20130731
Length = 311
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
+LF+G + + + L + FG+ G V+ V I+ D +T R+RGF FV + AE I
Sbjct: 109 RLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRM 168
Query: 65 MDKHIIDGRTVEAK-KAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFK 123
D + GR ++ VP + R KI+ G L +T +
Sbjct: 169 FDGTTVGGRAIKVNFPEVPIVGK----RVQMGSTYRGYVDSPHKIYAGNLGWDMTSQYLR 224
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
K F + + V+Y+ N + RG+GF+++++ E V+ L
Sbjct: 225 KAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVAL 265
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 105 TKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITY----DSEEAV 160
++++FVG LP +++ S + F + G + V ++YD T R RGF F+T D+EEA+
Sbjct: 107 SRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAI 166
>Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898677-7894080 | 20130731
Length = 447
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 51/82 (62%), Gaps = 4/82 (4%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
KLF+GGIS++T+E+ L + F KYG+V++ I+ DR +GR++GFGFV + A I
Sbjct: 45 KLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQA 104
Query: 65 MDKHIIDGRTVEAKKAV--PRD 84
+D + GR V A PRD
Sbjct: 105 LDGQDLYGRRVGVNFANERPRD 126
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDKVLY 165
K+FVGG+ E F ++G + D ++ D + R +GFGF+TY++ EEA +
Sbjct: 45 KLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQA 104
Query: 166 KTFHELNAKMVEVKRA 181
+L + V V A
Sbjct: 105 LDGQDLYGRRVGVNFA 120
>Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898604-7894080 | 20130731
Length = 447
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 51/82 (62%), Gaps = 4/82 (4%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
KLF+GGIS++T+E+ L + F KYG+V++ I+ DR +GR++GFGFV + A I
Sbjct: 45 KLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQA 104
Query: 65 MDKHIIDGRTVEAKKAV--PRD 84
+D + GR V A PRD
Sbjct: 105 LDGQDLYGRRVGVNFANERPRD 126
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDKVLY 165
K+FVGG+ E F ++G + D ++ D + R +GFGF+TY++ EEA +
Sbjct: 45 KLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQA 104
Query: 166 KTFHELNAKMVEVKRA 181
+L + V V A
Sbjct: 105 LDGQDLYGRRVGVNFA 120
>Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961723-37963823 | 20130731
Length = 146
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-M 65
KLFIGG+S++ +++ L++ F YG+V+E ++ DR TGR+RGFGFV F A + M
Sbjct: 37 KLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSALSM 96
Query: 66 DKHIIDGRTVEAKKAVPR 83
D ++GR + A R
Sbjct: 97 DGQDLNGRNIRVSYANDR 114
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%)
Query: 105 TKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
+ K+F+GGL + + + F +G + + V+ D T R RGFGF+ + SEE+ L
Sbjct: 35 SSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL 94
Query: 165 YKTFHELNAKMVEVKRAVPKE 185
+LN + + V A ++
Sbjct: 95 SMDGQDLNGRNIRVSYANDRQ 115
>Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| LC | chr4:26401562-26402849 | 20130731
Length = 190
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
+ F+GG++W T+ + L++ F K+GE+ + ++ DR TGR+RGFGFV FA+ I
Sbjct: 9 RCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRDAIEE 68
Query: 65 MDKHIIDGRTVEAKKA 80
M+ IDGR + +A
Sbjct: 69 MNGQDIDGRNITVNEA 84
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYK 166
+ FVGGL ++ F +FG ITD V+ D T R RGFGF+T+ A +K +
Sbjct: 9 RCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTF----AEEKSMRD 64
Query: 167 TFHELNAKMVE 177
E+N + ++
Sbjct: 65 AIEEMNGQDID 75
>Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:42674424-42676547 | 20130731
Length = 140
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 2/78 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
KLF+GG+S+ T E+ L + F YG+V+E ++ DR++ +++G+GFV FA AE+ I
Sbjct: 33 KLFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAITE 92
Query: 65 MDKHIIDGRTVEAKKAVP 82
M++ ++GR V A P
Sbjct: 93 MNEKALNGRVVFVDYAKP 110
>Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176327 | 20130731
Length = 425
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 75/174 (43%), Gaps = 15/174 (8%)
Query: 8 LFIGGISWDTNEEHLKEYFGK-YGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
+F+G ++ D + L E F Y V ++ D TGR++G+GFV F D + + +
Sbjct: 192 IFVGDLAADVTDSVLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQ 251
Query: 65 MDKHIIDGRTVEAKKAVPRDD--QQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDF 122
M+ R + A PR Q + IFVGGL S +T+ D
Sbjct: 252 MNGVYCSSRPMRIGAATPRKSSGHQPGGQSNGTSSQSEADSTNTTIFVGGLDSNVTDEDL 311
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMV 176
K+ F Q+G I V + +G GF+ + + ++ L K LN M+
Sbjct: 312 KQTFSQYGEIASVKIPVG------KGCGFVQFANRNNAEEALQK----LNGTMI 355
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 74/160 (46%), Gaps = 12/160 (7%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMDK 67
L+IG + +E +L F GE+ V ++R++ +G + G+GF F A AE+V+ +
Sbjct: 99 LWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATAEKVLQNY 158
Query: 68 HIIDGRTVEAKKAVPRDDQQ-NVNRQXXXXXXXXXXXXTK-KIFVGGLPSTITESDFKKY 125
A +P DQ +N T IFVG L + +T+S +
Sbjct: 159 ---------AGILMPNADQAFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSVLHET 209
Query: 126 F-DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
F + ++ V+YD NT R +G+GF+ + E + +
Sbjct: 210 FSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAM 249
>Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 26/159 (16%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
++++GGI D E LKE+ + GEV++V IM+ + +GF FV + + +A + I
Sbjct: 111 EVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEE 170
Query: 65 MDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKK 124
++ GR ++ + Q NR +F+G +P + E D KK
Sbjct: 171 LNNTEFKGRKIKCSTS------QAKNR----------------LFIGNIPRSWGEKDLKK 208
Query: 125 YFDQFGT-ITDVVVMYD-HNTQRPRGFGFITYDSEEAVD 161
G +T V ++ D N RGF FI Y + + +
Sbjct: 209 VVTDIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAE 247
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 79/185 (42%), Gaps = 19/185 (10%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGE-VIEVVIMRD-RLTGRARGFGFVVFADSAVAE--- 61
+LFIG I E+ LK+ G V V +++D + RGF F+ + ++ AE
Sbjct: 191 RLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAEYGR 250
Query: 62 -RVIMDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITES 120
+++ + + A P++ + + Q K ++V LP +T+
Sbjct: 251 QKMMSPSFKLGDNSPTVSWADPKNSDSSASSQ------------VKAVYVKNLPKNVTQE 298
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKT-FHELNAKMVEVK 179
KK F+ G IT VV+ + Q GF+ + K L T +EL+ + +E
Sbjct: 299 QLKKLFEHHGKITKVVLPPPKSGQEKNRIGFVHFAERSNAMKALKNTERYELDGQNLECS 358
Query: 180 RAVPK 184
A P+
Sbjct: 359 LAKPQ 363
>Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 26/159 (16%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
++++GGI D E LKE+ + GEV++V IM+ + +GF FV + + +A + I
Sbjct: 111 EVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEE 170
Query: 65 MDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKK 124
++ GR ++ + Q NR +F+G +P + E D KK
Sbjct: 171 LNNTEFKGRKIKCSTS------QAKNR----------------LFIGNIPRSWGEKDLKK 208
Query: 125 YFDQFGT-ITDVVVMYD-HNTQRPRGFGFITYDSEEAVD 161
G +T V ++ D N RGF FI Y + + +
Sbjct: 209 VVTDIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAE 247
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 79/185 (42%), Gaps = 19/185 (10%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGE-VIEVVIMRD-RLTGRARGFGFVVFADSAVAE--- 61
+LFIG I E+ LK+ G V V +++D + RGF F+ + ++ AE
Sbjct: 191 RLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAEYGR 250
Query: 62 -RVIMDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITES 120
+++ + + A P++ + + Q K ++V LP +T+
Sbjct: 251 QKMMSPSFKLGDNSPTVSWADPKNSDSSASSQ------------VKAVYVKNLPKNVTQE 298
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKT-FHELNAKMVEVK 179
KK F+ G IT VV+ + Q GF+ + K L T +EL+ + +E
Sbjct: 299 QLKKLFEHHGKITKVVLPPPKSGQEKNRIGFVHFAERSNAMKALKNTERYELDGQNLECS 358
Query: 180 RAVPK 184
A P+
Sbjct: 359 LAKPQ 363
>Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 26/159 (16%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
++++GGI D E LKE+ + GEV++V IM+ + +GF FV + + +A + I
Sbjct: 111 EVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEE 170
Query: 65 MDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKK 124
++ GR ++ + Q NR +F+G +P + E D KK
Sbjct: 171 LNNTEFKGRKIKCSTS------QAKNR----------------LFIGNIPRSWGEKDLKK 208
Query: 125 YFDQFGT-ITDVVVMYD-HNTQRPRGFGFITYDSEEAVD 161
G +T V ++ D N RGF FI Y + + +
Sbjct: 209 VVTDIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAE 247
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 79/185 (42%), Gaps = 19/185 (10%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGE-VIEVVIMRD-RLTGRARGFGFVVFADSAVAE--- 61
+LFIG I E+ LK+ G V V +++D + RGF F+ + ++ AE
Sbjct: 191 RLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAEYGR 250
Query: 62 -RVIMDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITES 120
+++ + + A P++ + + Q K ++V LP +T+
Sbjct: 251 QKMMSPSFKLGDNSPTVSWADPKNSDSSASSQ------------VKAVYVKNLPKNVTQE 298
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKT-FHELNAKMVEVK 179
KK F+ G IT VV+ + Q GF+ + K L T +EL+ + +E
Sbjct: 299 QLKKLFEHHGKITKVVLPPPKSGQEKNRIGFVHFAERSNAMKALKNTERYELDGQNLECS 358
Query: 180 RAVPK 184
A P+
Sbjct: 359 LAKPQ 363
>Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC |
chr2:41853094-41847353 | 20130731
Length = 428
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 87/186 (46%), Gaps = 17/186 (9%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMDK 67
L+IG + + +E +L F GEVI + I+R+++TG+ G+GF+ F + AERV+
Sbjct: 17 LWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVL--- 73
Query: 68 HIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKKYF- 126
+G + + R + + IFVG L +T+ ++ F
Sbjct: 74 QTYNGTQMPGTEQTFRLNWASFG----IGERRPDAGPDHSIFVGDLAPDVTDYLLQETFR 129
Query: 127 DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELN-----AKMVEVKRA 181
+G++ V+ D NT R +G+GF+ + E ++ + E+N + + + A
Sbjct: 130 THYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAM----SEMNGVYCSTRPMRISAA 185
Query: 182 VPKELS 187
PK+ +
Sbjct: 186 TPKKTT 191
>Medtr1g097440.2 | polyadenylate-binding protein | HC |
chr1:43966152-43970565 | 20130731
Length = 646
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 81/175 (46%), Gaps = 13/175 (7%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFA--DSAVAERVIM 65
+++ IS + +E LK+ FG +G + +M+D G++R FGFV F DSA A +
Sbjct: 211 VYVKNISEASTDEDLKQLFGPFGMITSATVMKD-ANGKSRCFGFVNFQSPDSAAAAVEKL 269
Query: 66 DKHIIDGRTV----EAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESD 121
+ I+ V A++ R+++ + +++ L E
Sbjct: 270 NGTAINDDKVLFVGRAQRKAERENELKAKFEQERISRYEKLQGAN-LYLKNLDDDFNEEK 328
Query: 122 FKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMV 176
K F +FGT+T VM D + +G GF+ + + E +K L +E+N K+V
Sbjct: 329 LKDLFSEFGTVTSCRVMLDSHGHS-KGSGFVAFSTPEEANKAL----NEMNGKLV 378
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 71/163 (43%), Gaps = 14/163 (8%)
Query: 6 GKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI- 64
G +FI + + + L + F +G V+ + D G+++G+GFV F + A+ I
Sbjct: 118 GNVFIKNLDTSIDHKALHDTFAAFGPVLSCKVALDG-NGQSKGYGFVQFDNEEAAKSAIK 176
Query: 65 -MDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFK 123
+D +I+ + V V ++ N ++V + T+ D K
Sbjct: 177 QLDGMLINDKQVYVGFFVRHQERARTN----------GSPKFTNVYVKNISEASTDEDLK 226
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYK 166
+ F FG IT VM D N + R FGF+ + S ++ + K
Sbjct: 227 QLFGPFGMITSATVMKDANG-KSRCFGFVNFQSPDSAAAAVEK 268
>Medtr1g097440.1 | polyadenylate-binding protein | HC |
chr1:43966161-43970565 | 20130731
Length = 646
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 81/175 (46%), Gaps = 13/175 (7%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFA--DSAVAERVIM 65
+++ IS + +E LK+ FG +G + +M+D G++R FGFV F DSA A +
Sbjct: 211 VYVKNISEASTDEDLKQLFGPFGMITSATVMKD-ANGKSRCFGFVNFQSPDSAAAAVEKL 269
Query: 66 DKHIIDGRTV----EAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESD 121
+ I+ V A++ R+++ + +++ L E
Sbjct: 270 NGTAINDDKVLFVGRAQRKAERENELKAKFEQERISRYEKLQGAN-LYLKNLDDDFNEEK 328
Query: 122 FKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMV 176
K F +FGT+T VM D + +G GF+ + + E +K L +E+N K+V
Sbjct: 329 LKDLFSEFGTVTSCRVMLDSHGHS-KGSGFVAFSTPEEANKAL----NEMNGKLV 378
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 71/163 (43%), Gaps = 14/163 (8%)
Query: 6 GKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI- 64
G +FI + + + L + F +G V+ + D G+++G+GFV F + A+ I
Sbjct: 118 GNVFIKNLDTSIDHKALHDTFAAFGPVLSCKVALDG-NGQSKGYGFVQFDNEEAAKSAIK 176
Query: 65 -MDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFK 123
+D +I+ + V V ++ N ++V + T+ D K
Sbjct: 177 QLDGMLINDKQVYVGFFVRHQERARTN----------GSPKFTNVYVKNISEASTDEDLK 226
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYK 166
+ F FG IT VM D N + R FGF+ + S ++ + K
Sbjct: 227 QLFGPFGMITSATVMKDANG-KSRCFGFVNFQSPDSAAAAVEK 268
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 19/163 (11%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
KL+ G + + + L +YG + ++ DR TG++RGF FV + VI
Sbjct: 114 KLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNAVIQN 173
Query: 65 MDKHIIDGRTVE---AKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESD 121
+D GRT+ + K P++ K+FVG L T+T
Sbjct: 174 LDGKEFMGRTLRVNFSDKPKPKEP--------------LYPETEYKLFVGNLAWTVTSES 219
Query: 122 FKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
+ F + GT+ V++D T + RG+GF++Y ++ +D L
Sbjct: 220 LTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTAL 262
>Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527062-45523373 | 20130731
Length = 276
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 48/87 (55%), Gaps = 10/87 (11%)
Query: 7 KLFIGGI--------SWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSA 58
KLFIGGI S+ T+E L+E F +YGEV++ I+ DR TGR+RGFGF+ F
Sbjct: 43 KLFIGGILHLSVAGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVE 102
Query: 59 VAERVI--MDKHIIDGRTVEAKKAVPR 83
A I +D + GR V A R
Sbjct: 103 EASSAIQALDGQDLHGRRVRVNYANER 129
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 9/86 (10%)
Query: 105 TKKIFVGGL--------PSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 156
T K+F+GG+ + E+ ++ F ++G + D ++ D T R RGFGFIT++S
Sbjct: 41 TTKLFIGGILHLSVAGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNS 100
Query: 157 -EEAVDKVLYKTFHELNAKMVEVKRA 181
EEA + +L+ + V V A
Sbjct: 101 VEEASSAIQALDGQDLHGRRVRVNYA 126
>Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 354
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 73/160 (45%), Gaps = 26/160 (16%)
Query: 6 GKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI- 64
++++GGI D E LKE+ + GEV++V IM+ + +GF FV + + +A + I
Sbjct: 110 SEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIE 169
Query: 65 -MDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFK 123
++ GR ++ + Q NR +F+G +P + E D K
Sbjct: 170 ELNNTEFKGRKIKCSTS------QAKNR----------------LFIGNIPRSWGEKDLK 207
Query: 124 KYFDQFGT-ITDVVVMYD-HNTQRPRGFGFITYDSEEAVD 161
K G +T V ++ D N RGF FI Y + + +
Sbjct: 208 KVVTDIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAE 247
>Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 420
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 72/165 (43%), Gaps = 15/165 (9%)
Query: 8 LFIGGISWDTNEEHLKEYFG-KYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
+F+G ++ D + L E F KY V ++ D TGR++G+GFV F D + +
Sbjct: 189 IFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNE 248
Query: 65 MDKHIIDGRTVEAKKAVPRDDQ--QNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDF 122
M+ R + A PR Q + IFVGGL + T D
Sbjct: 249 MNGVFCSSRAMRIGAATPRKSSGYQQGGQSNGTPSQSDTDSTNTTIFVGGLDPSATAEDL 308
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITY----DSEEAVDKV 163
++ F Q+G I V + +G GF+ + ++EEA+ K+
Sbjct: 309 RQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQKL 347
>Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 19/185 (10%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGE-VIEVVIMRD-RLTGRARGFGFVVFADSAVAE--- 61
+LFIG + + E +K+ K G VI V +++D + + R RGF F+ + + A AE
Sbjct: 179 RLFIGSVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSR 238
Query: 62 -RVIMDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITES 120
++ +D A PR+ + + + Q K ++V LP IT++
Sbjct: 239 QKMSNSNFKLDNNDAIVSWADPRNSESSSSSQ------------VKAVYVKNLPENITQN 286
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKT-FHELNAKMVEVK 179
K+ F+ G IT V + Q +GF+ + + K L T +E+N + +E
Sbjct: 287 RLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSSAMKALKNTEKYEINGQTLECS 346
Query: 180 RAVPK 184
A P+
Sbjct: 347 LAKPQ 351
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 71/159 (44%), Gaps = 29/159 (18%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
+++IGGI +T+E+ L+ + GEV EV +M+ + A+G+ FV F +A + +
Sbjct: 102 EVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGK---EAKGYAFVTFKTKELASKALKE 158
Query: 65 MDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKK 124
++ GR ++ + ++F+G +P T D KK
Sbjct: 159 LNNSEFKGRKIKCSPS----------------------QVKHRLFIGSVPKEWTVEDMKK 196
Query: 125 YFDQFGT-ITDVVVMYD-HNTQRPRGFGFITYDSEEAVD 161
+ G + V ++ D ++ R RGF FI Y + +
Sbjct: 197 VVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAE 235
>Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 19/185 (10%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGE-VIEVVIMRD-RLTGRARGFGFVVFADSAVAE--- 61
+LFIG + + E +K+ K G VI V +++D + + R RGF F+ + + A AE
Sbjct: 179 RLFIGSVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSR 238
Query: 62 -RVIMDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITES 120
++ +D A PR+ + + + Q K ++V LP IT++
Sbjct: 239 QKMSNSNFKLDNNDAIVSWADPRNSESSSSSQ------------VKAVYVKNLPENITQN 286
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKT-FHELNAKMVEVK 179
K+ F+ G IT V + Q +GF+ + + K L T +E+N + +E
Sbjct: 287 RLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSSAMKALKNTEKYEINGQTLECS 346
Query: 180 RAVPK 184
A P+
Sbjct: 347 LAKPQ 351
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 71/159 (44%), Gaps = 29/159 (18%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
+++IGGI +T+E+ L+ + GEV EV +M+ + A+G+ FV F +A + +
Sbjct: 102 EVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGK---EAKGYAFVTFKTKELASKALKE 158
Query: 65 MDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKK 124
++ GR ++ + ++F+G +P T D KK
Sbjct: 159 LNNSEFKGRKIKCSPS----------------------QVKHRLFIGSVPKEWTVEDMKK 196
Query: 125 YFDQFGT-ITDVVVMYD-HNTQRPRGFGFITYDSEEAVD 161
+ G + V ++ D ++ R RGF FI Y + +
Sbjct: 197 VVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAE 235
>Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42488464-42483010 | 20130731
Length = 477
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 19/185 (10%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGE-VIEVVIMRD-RLTGRARGFGFVVFADSAVAE--- 61
+LFIG + + E +K+ K G VI V +++D + + R RGF F+ + + A AE
Sbjct: 179 RLFIGSVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSR 238
Query: 62 -RVIMDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITES 120
++ +D A PR+ + + + Q K ++V LP IT++
Sbjct: 239 QKMSNSNFKLDNNDAIVSWADPRNSESSSSSQ------------VKAVYVKNLPENITQN 286
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKT-FHELNAKMVEVK 179
K+ F+ G IT V + Q +GF+ + + K L T +E+N + +E
Sbjct: 287 RLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSSAMKALKNTEKYEINGQTLECS 346
Query: 180 RAVPK 184
A P+
Sbjct: 347 LAKPQ 351
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 71/159 (44%), Gaps = 29/159 (18%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
+++IGGI +T+E+ L+ + GEV EV +M+ + A+G+ FV F +A + +
Sbjct: 102 EVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGK---EAKGYAFVTFKTKELASKALKE 158
Query: 65 MDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKK 124
++ GR ++ + ++F+G +P T D KK
Sbjct: 159 LNNSEFKGRKIKCSPS----------------------QVKHRLFIGSVPKEWTVEDMKK 196
Query: 125 YFDQFGT-ITDVVVMYD-HNTQRPRGFGFITYDSEEAVD 161
+ G + V ++ D ++ R RGF FI Y + +
Sbjct: 197 VVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAE 235
>Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 19/185 (10%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGE-VIEVVIMRD-RLTGRARGFGFVVFADSAVAE--- 61
+LFIG + + E +K+ K G VI V +++D + + R RGF F+ + + A AE
Sbjct: 179 RLFIGSVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSR 238
Query: 62 -RVIMDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITES 120
++ +D A PR+ + + + Q K ++V LP IT++
Sbjct: 239 QKMSNSNFKLDNNDAIVSWADPRNSESSSSSQ------------VKAVYVKNLPENITQN 286
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKT-FHELNAKMVEVK 179
K+ F+ G IT V + Q +GF+ + + K L T +E+N + +E
Sbjct: 287 RLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSSAMKALKNTEKYEINGQTLECS 346
Query: 180 RAVPK 184
A P+
Sbjct: 347 LAKPQ 351
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 71/159 (44%), Gaps = 29/159 (18%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
+++IGGI +T+E+ L+ + GEV EV +M+ + A+G+ FV F +A + +
Sbjct: 102 EVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGK---EAKGYAFVTFKTKELASKALKE 158
Query: 65 MDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKK 124
++ GR ++ + ++F+G +P T D KK
Sbjct: 159 LNNSEFKGRKIKCSPS----------------------QVKHRLFIGSVPKEWTVEDMKK 196
Query: 125 YFDQFGT-ITDVVVMYD-HNTQRPRGFGFITYDSEEAVD 161
+ G + V ++ D ++ R RGF FI Y + +
Sbjct: 197 VVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAE 235
>Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961794-37963766 | 20130731
Length = 105
Score = 62.0 bits (149), Expect = 7e-10, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-M 65
KLFIGG+S++ +++ L++ F YG+V+E ++ DR TGR+RGFGFV F A + M
Sbjct: 37 KLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSALSM 96
Query: 66 DKHII 70
D ++
Sbjct: 97 DGQVV 101
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 105 TKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
+ K+F+GGL + + + F +G + + V+ D T R RGFGF+ + SEE+ L
Sbjct: 35 SSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL 94
>Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176186 | 20130731
Length = 309
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 12/162 (7%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMDK 67
L+IG + +E +L F GE+ V ++R++ +G + G+GF F A AE+V+ +
Sbjct: 99 LWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATAEKVLQNY 158
Query: 68 HIIDGRTVEAKKAVPRDDQQ-NVNRQXXXXXXXXXXXXTK-KIFVGGLPSTITESDFKKY 125
A +P DQ +N T IFVG L + +T+S +
Sbjct: 159 ---------AGILMPNADQAFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSVLHET 209
Query: 126 F-DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYK 166
F + ++ V+YD NT R +G+GF+ + E + + +
Sbjct: 210 FSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQ 251
>Medtr3g095230.2 | CC1-like splicing factor | LC |
chr3:43513031-43520987 | 20130731
Length = 576
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 84/179 (46%), Gaps = 13/179 (7%)
Query: 2 ESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADS-AVA 60
E D +F + E + E+F K G+V +V ++ DR + R++G G++ F D+ +V
Sbjct: 211 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVP 270
Query: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXX----XXTKKIFVGGLPST 116
+ + ++ G+ V K P + ++N+ + +K++VG L
Sbjct: 271 MAIALSGQLLLGQPVMVK---PSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFN 327
Query: 117 ITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKM 175
+TES ++ F+ FGT+ V + D T +GFGFI + E K LN K+
Sbjct: 328 MTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHA-----KAAQSLNGKL 381
>Medtr3g095230.3 | CC1-like splicing factor | LC |
chr3:43513031-43520279 | 20130731
Length = 576
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 84/179 (46%), Gaps = 13/179 (7%)
Query: 2 ESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADS-AVA 60
E D +F + E + E+F K G+V +V ++ DR + R++G G++ F D+ +V
Sbjct: 211 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVP 270
Query: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXX----XXTKKIFVGGLPST 116
+ + ++ G+ V K P + ++N+ + +K++VG L
Sbjct: 271 MAIALSGQLLLGQPVMVK---PSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFN 327
Query: 117 ITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKM 175
+TES ++ F+ FGT+ V + D T +GFGFI + E K LN K+
Sbjct: 328 MTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHA-----KAAQSLNGKL 381
>Medtr3g095230.1 | CC1-like splicing factor | LC |
chr3:43513030-43521003 | 20130731
Length = 587
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 84/179 (46%), Gaps = 13/179 (7%)
Query: 2 ESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADS-AVA 60
E D +F + E + E+F K G+V +V ++ DR + R++G G++ F D+ +V
Sbjct: 211 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVP 270
Query: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXX----XXTKKIFVGGLPST 116
+ + ++ G+ V K P + ++N+ + +K++VG L
Sbjct: 271 MAIALSGQLLLGQPVMVK---PSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFN 327
Query: 117 ITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKM 175
+TES ++ F+ FGT+ V + D T +GFGFI + E K LN K+
Sbjct: 328 MTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHA-----KAAQSLNGKL 381
>Medtr7g102730.1 | polyadenylate-binding protein | HC |
chr7:41652502-41656607 | 20130731
Length = 629
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 81/166 (48%), Gaps = 7/166 (4%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI--M 65
L++ + D +E L+E F +G++I + + +D G ++GFGFV F + A+R + M
Sbjct: 191 LYMKNLDLDISETLLREKFSSFGKIISLAVAKDS-NGMSKGFGFVNFDNPEDAKRAMETM 249
Query: 66 DKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTK--KIFVGGLPSTITESDFK 123
+ + + + +A + +++ + Q K I+V + +++ +
Sbjct: 250 NGLQLGSKILYVARAQKKAEREQILHQQFEEKRKEQVLKYKGSNIYVKNIDDNVSDEGLR 309
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFH 169
+F GTIT +M D + +GFGF+ + + E +K + +FH
Sbjct: 310 DHFSVCGTITSAKIMRD-DKGISKGFGFVCFSTPEEANKAV-NSFH 353
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 91/189 (48%), Gaps = 21/189 (11%)
Query: 2 ESDLGKLFIGGISWDTNEEHLKEYFGKYGEVI--EVVIMRDRLTGRARGFGFVVFADSAV 59
+S +G +F+ ++ + L++ F K+G ++ +VV+ D G+++G+GFV F
Sbjct: 94 KSCIGNVFVKNLAESIDNSGLEDMFKKFGNILSSKVVMSED---GKSKGYGFVQFETEES 150
Query: 60 AERVI--MDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTI 117
A I ++ +++ + + K V + D+ +++ L I
Sbjct: 151 ANAAIERLNGYLVGDKQIYVGKFVKKSDR----------ISSGPDTRYTNLYMKNLDLDI 200
Query: 118 TESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFH--ELNAKM 175
+E+ ++ F FG I + V D N +GFGF+ +D+ E + + +T + +L +K+
Sbjct: 201 SETLLREKFSSFGKIISLAVAKDSNGMS-KGFGFVNFDNPEDAKRAM-ETMNGLQLGSKI 258
Query: 176 VEVKRAVPK 184
+ V RA K
Sbjct: 259 LYVARAQKK 267
>Medtr8g092550.1 | CC1-like splicing factor | HC |
chr8:38688579-38694751 | 20130731
Length = 567
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 108/260 (41%), Gaps = 21/260 (8%)
Query: 2 ESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADS-AVA 60
E D +F + E + E+F K G+V +V ++ DR + R++G G++ F D+ +V
Sbjct: 198 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVP 257
Query: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITES 120
+ + ++ G+ V K + + N +K++VG L +TE+
Sbjct: 258 MAIALSGQLLLGQPVMVKPSEAEKNLVQSNASSGAAVVGPYGAVDRKLYVGNLHFNMTEA 317
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEVKR 180
+ ++ F+ FG I V + D T +GFGF+ + E K LN K+ R
Sbjct: 318 NLREIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHA-----KAAQSLNGKLEIAGR 372
Query: 181 AVPKELSPD---PNRSPLIGYNYGLNRASSYLNIYAQGYSMSPIGGHGV-------RMNG 230
+ D + ++ + LN +++ M + G + +NG
Sbjct: 373 TIKVSSVTDHVGSQDTTTKSADFDDDEGGLTLNAHSRALLMQRLAGTDITTSIGVPTVNG 432
Query: 231 RFSPLTSVRTGFS-PFGNTG 249
V+ FS PFGN G
Sbjct: 433 S----VPVQQAFSMPFGNPG 448
>Medtr6g040070.1 | DEAD/DEAH-box helicase | HC |
chr6:14397151-14388452 | 20130731
Length = 784
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 76/157 (48%), Gaps = 8/157 (5%)
Query: 13 ISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFA--DSAVAERVIMDKHII 70
+ DT+E+ LK+ F YG + VIM+D G ++ FGFV F DSA A ++
Sbjct: 113 LETDTDED-LKKLFSTYGVITSAVIMKDE-NGNSKCFGFVNFQSPDSAAAAVEKLNGTTT 170
Query: 71 -DGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTK--KIFVGGLPSTITESDFKKYFD 127
DG+ + +A + +++ R + +++ L +I + K+ F
Sbjct: 171 NDGKVLYVGRAQRKCEREAELRAKFEQEKIKRYEKLQGANLYLKNLDESINDEKLKEMFS 230
Query: 128 QFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
+FGTIT VM+D + +GFGF+ + + E K +
Sbjct: 231 EFGTITSCKVMFDAHGHS-KGFGFVAFSTSEEASKAI 266
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 19/163 (11%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMDK 67
+F+ + + + L + F +G V+ + D G++ G+GFV + D+ + + ++K
Sbjct: 17 VFVKNLDTSIDNKVLHDTFATFGTVLSCKVALDS-NGKSLGYGFVQY-DNHESAKCAIEK 74
Query: 68 HIIDGRTVEAKKAVP----RDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFK 123
+DG ++ KKA R +++ N ++V L T T+ D K
Sbjct: 75 --LDGMLIKDKKAFVGYFIRRQERSEN----------GSPKFTNVYVKNLLETDTDEDLK 122
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYK 166
K F +G IT V+M D N + FGF+ + S ++ + K
Sbjct: 123 KLFSTYGVITSAVIMKDENGNS-KCFGFVNFQSPDSAAAAVEK 164
>Medtr3g099590.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:45657608-45655484 | 20130731
Length = 290
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 18/164 (10%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVI-MRDRLTGRARGFGFVVFADSAVAERVI- 64
+L + W + E ++ F KYG+V+ V + M ++ R RG FV A +
Sbjct: 90 RLLAQNVPWSSTTEDVRSLFEKYGKVLHVELSMYNK--NRNRGLAFVEMGSPEEASEALN 147
Query: 65 -MDKHIIDGRTVEAKKAVPRDDQQN--VNRQXXXXXXXXXXXXTKKIFVGGLPSTITESD 121
+ + DGR + + A P+ ++ V R+ T +FV P D
Sbjct: 148 SLQSYEFDGRIINIQYAKPKKEKIPPPVERKPI----------TYNLFVANFPYEARSKD 197
Query: 122 FKKYFDQ-FGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
K++FD G + V++ N +RP G+GF++Y S++ D+ L
Sbjct: 198 VKEFFDSGTGKVVSAEVIFHENPRRPSGYGFVSYKSKKEADEAL 241
>Medtr3g099590.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:45657608-45655484 | 20130731
Length = 290
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 18/164 (10%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVI-MRDRLTGRARGFGFVVFADSAVAERVI- 64
+L + W + E ++ F KYG+V+ V + M ++ R RG FV A +
Sbjct: 90 RLLAQNVPWSSTTEDVRSLFEKYGKVLHVELSMYNK--NRNRGLAFVEMGSPEEASEALN 147
Query: 65 -MDKHIIDGRTVEAKKAVPRDDQQN--VNRQXXXXXXXXXXXXTKKIFVGGLPSTITESD 121
+ + DGR + + A P+ ++ V R+ T +FV P D
Sbjct: 148 SLQSYEFDGRIINIQYAKPKKEKIPPPVERKPI----------TYNLFVANFPYEARSKD 197
Query: 122 FKKYFDQ-FGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
K++FD G + V++ N +RP G+GF++Y S++ D+ L
Sbjct: 198 VKEFFDSGTGKVVSAEVIFHENPRRPSGYGFVSYKSKKEADEAL 241
>Medtr4g085540.1 | polyadenylate-binding protein | HC |
chr4:33416965-33423437 | 20130731
Length = 654
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 83/186 (44%), Gaps = 30/186 (16%)
Query: 2 ESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAE 61
+S G +FI + + + L + F +G ++ + D +G+++G+GFV F A+
Sbjct: 118 KSGQGNIFIKNLDKAIDHKALHDTFSSFGNILSCKVAVDG-SGQSKGYGFVQFDTEEAAQ 176
Query: 62 RVIM--------DKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGL 113
+ I DK + G + ++ D+ N +FV L
Sbjct: 177 KAIEKLNGMLLNDKQVYVGPFLRKQERESTGDRAKFN----------------NVFVKNL 220
Query: 114 PSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNA 173
+ T+ + KK F +FGTIT VVM D + + + FGF+ ++S + + + LN
Sbjct: 221 SESTTDDELKKTFGEFGTITSAVVMRDGDG-KSKCFGFVNFESTDDAARAV----EALNG 275
Query: 174 KMVEVK 179
K ++ K
Sbjct: 276 KKIDDK 281
>Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:23466507-23467712 | 20130731
Length = 112
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVF--ADSAVAERVI 64
KLFI G+S++TNE L++ F ++G++IEV ++ + TG ++G+GFV F +A R
Sbjct: 34 KLFIAGLSYNTNETVLRDTFEQHGQIIEVKVICNHRTGESKGYGFVRFNSETAAATARKE 93
Query: 65 MDKHIIDGRTV 75
+ I+DGR +
Sbjct: 94 LHGQIVDGRRI 104
>Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr6:28646362-28643393 | 20130731
Length = 183
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
+L++ G+S+ T EE L+ F +G++++V ++ D++ R RGF F+ +A +++ I
Sbjct: 96 RLYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPRGFAFLRYATEEESKKAIEG 155
Query: 67 KH--IIDGRTVEAKKAVPRDDQQNVNRQ 92
H +DGR + + A PR + + ++Q
Sbjct: 156 MHGKFLDGRVIFVEVAKPRSELRQGSKQ 183
>Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr3:3865418-3863915 | 20130731
Length = 138
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 40/57 (70%), Gaps = 4/57 (7%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI 64
LF+GGIS++T L+++F YG+V++ I+RDR TGR RGFGFV FA + A +
Sbjct: 36 LFLGGISYNT----LRKHFSLYGKVLDAKIIRDRETGRPRGFGFVTFATTEEASAAL 88
>Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:31628430-31625444 | 20130731
Length = 144
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI--M 65
LF+ G+S T E L+E F K+GEV+ ++ DR++G ++GFGFV +A A + I M
Sbjct: 53 LFVSGLSKRTTTETLREAFQKFGEVVHARVVTDRVSGYSKGFGFVKYATLEDAAKGIEGM 112
Query: 66 DKHIIDGRTVEAKKAVPR 83
D ++G + A+ A PR
Sbjct: 113 DGKFLEGWVIFAEYARPR 130
>Medtr1g061870.1 | polyadenylate-binding plant protein, putative |
HC | chr1:27029234-27025443 | 20130731
Length = 522
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 15/182 (8%)
Query: 6 GKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIM 65
G +F+ ++ + L + F KYG ++ I R G+++GFG++ F DS + V +
Sbjct: 103 GNVFVKNLAASIDNVGLHDLFQKYGNILSSKIARSE-DGKSKGFGYIQF-DSEESANVAI 160
Query: 66 DKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTK--KIFVGGLPSTITESDFK 123
K ++G TV RD Q V + K ++V L +TE
Sbjct: 161 QK--MNGSTV-------RDKQIYVGKFIRKSERSLPDLDAKFTNLYVKNLDPVVTEKHLG 211
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTF-HELNAKMVEVKRAV 182
+ F FG I + + D N Q +GFGF+ YDS + + + + +K++ V RA
Sbjct: 212 EKFSSFGKIVSLAIKKDENGQ-SKGFGFVNYDSPDDARRAMEAMDGSQFGSKILYVARAQ 270
Query: 183 PK 184
K
Sbjct: 271 KK 272
>Medtr7g010360.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
LC | chr7:2533493-2542856 | 20130731
Length = 752
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 22/158 (13%)
Query: 6 GKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIM 65
++++GGI D E LKE+ GEV++V I + + RGF FV + +A + I
Sbjct: 350 SEVYVGGIPLDAKTEDLKEFCECIGEVVQVRIFKGKDASENRGFAFVTYRSIELASKAIK 409
Query: 66 DKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKKY 125
+ ++ +A K Q ++F+G +P + E D KK
Sbjct: 410 E---LNNTEFKAGKIKCSKSQ-----------------AKSRLFIGNIPRSWGEKDLKKV 449
Query: 126 FDQFGT-ITDVVVMYD-HNTQRPRGFGFITYDSEEAVD 161
G +T V ++ D N RG+ FI Y + + +
Sbjct: 450 VSDIGPGVTAVELIKDMKNISNNRGYAFIDYHNNQCAE 487
>Medtr3g109090.3 | nucleolysin TIAR-like protein | HC |
chr3:50426665-50437301 | 20130731
Length = 424
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 73/163 (44%), Gaps = 19/163 (11%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMDK 67
+++G I + ++ L E F G + ++R + +GFV + D A A IM
Sbjct: 46 VYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSS----YGFVDYHDRASAALAIMTL 101
Query: 68 HIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKKYFD 127
H GR + + N +R+ +FVG L +T++ F
Sbjct: 102 H---GRQLYGQALKVNWAYANSSREDTSGHF--------NVFVGDLSPEVTDATLFACFS 150
Query: 128 QFGTITDVVVMYDHNTQRPRGFGFITY----DSEEAVDKVLYK 166
+ T +D VM+DH T R +G+GF+++ D++ A++ + K
Sbjct: 151 VYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGK 193
>Medtr3g109090.1 | nucleolysin TIAR-like protein | HC |
chr3:50427006-50436985 | 20130731
Length = 440
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 73/163 (44%), Gaps = 19/163 (11%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMDK 67
+++G I + ++ L E F G + ++R + +GFV + D A A IM
Sbjct: 62 VYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSS----YGFVDYHDRASAALAIMTL 117
Query: 68 HIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKKYFD 127
H GR + + N +R+ +FVG L +T++ F
Sbjct: 118 H---GRQLYGQALKVNWAYANSSREDTSGHF--------NVFVGDLSPEVTDATLFACFS 166
Query: 128 QFGTITDVVVMYDHNTQRPRGFGFITY----DSEEAVDKVLYK 166
+ T +D VM+DH T R +G+GF+++ D++ A++ + K
Sbjct: 167 VYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGK 209
>Medtr3g109090.2 | nucleolysin TIAR-like protein | HC |
chr3:50426599-50437301 | 20130731
Length = 440
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 73/163 (44%), Gaps = 19/163 (11%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMDK 67
+++G I + ++ L E F G + ++R + +GFV + D A A IM
Sbjct: 62 VYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSS----YGFVDYHDRASAALAIMTL 117
Query: 68 HIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKKYFD 127
H GR + + N +R+ +FVG L +T++ F
Sbjct: 118 H---GRQLYGQALKVNWAYANSSREDTSGHF--------NVFVGDLSPEVTDATLFACFS 166
Query: 128 QFGTITDVVVMYDHNTQRPRGFGFITY----DSEEAVDKVLYK 166
+ T +D VM+DH T R +G+GF+++ D++ A++ + K
Sbjct: 167 VYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGK 209
>Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:40168782-40171275 | 20130731
Length = 141
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
KLFI G+S T +E L E F +G+++E ++ DR +GR++GF FV ++ AE+
Sbjct: 36 KLFISGLSRLTTDEKLTEAFSPFGQLLEAKVITDRGSGRSKGFAFVSYSTIEEAEKAREG 95
Query: 65 MDKHIIDGRTVEAKKAVPRD 84
M+ +DG + A PR+
Sbjct: 96 MNAKFLDGWVIFVDPAKPRE 115
>Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:41240036-41242642 | 20130731
Length = 89
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 9/86 (10%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYK 166
K+FV L T+ + F FG +T+ ++ D NTQRP+GFGF++Y SE +K
Sbjct: 8 KLFVSRLSFYTTQQQLESLFSPFGVLTEATLITDQNTQRPKGFGFVSYKSEIEAEKAR-- 65
Query: 167 TFHELNAKMVE-----VKRAVPKELS 187
LN ++V+ V+ A PK+ S
Sbjct: 66 --KALNGRIVDGRLIFVEHAKPKDSS 89
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAE--RVI 64
KLF+ +S+ T ++ L+ F +G + E ++ D+ T R +GFGFV + AE R
Sbjct: 8 KLFVSRLSFYTTQQQLESLFSPFGVLTEATLITDQNTQRPKGFGFVSYKSEIEAEKARKA 67
Query: 65 MDKHIIDGRTVEAKKAVPRD 84
++ I+DGR + + A P+D
Sbjct: 68 LNGRIVDGRLIFVEHAKPKD 87
>Medtr4g081510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:31623161-31620622 | 20130731
Length = 185
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI--M 65
+F+ G++ T E L+E F K+GEV +V ++ DR++G ++GFG+V +A S A + I M
Sbjct: 46 VFVTGLNKRTTSETLREAFKKFGEVKQVRVVADRVSGYSKGFGYVRYATSEDAAKGIQGM 105
Query: 66 DKHIIDGRTVEAKKAVPR 83
D ++G V A+ A PR
Sbjct: 106 DGKFLEGWIVFAEYARPR 123
>Medtr4g124940.1 | nucleolysin TIAR-like protein | HC |
chr4:51822192-51817182 | 20130731
Length = 404
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 73/164 (44%), Gaps = 19/164 (11%)
Query: 3 SDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFAD--SAVA 60
S +++G I +E L+E F G + ++R + +GFV + D SA
Sbjct: 43 STCRSVYVGNIHPQVSEPLLQELFSSAGALEGCKLIRKEKSS----YGFVDYFDRSSAAI 98
Query: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITES 120
V ++ I G++++ A R +++ + IFVG L +T++
Sbjct: 99 AIVTLNGRNIFGQSIKVNWAYTRGQREDTSGHF-------------HIFVGDLSPEVTDA 145
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
F + + +D VM+D T R RGFGF+++ +++ +
Sbjct: 146 TLYACFSAYSSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAI 189
>Medtr3g102040.1 | polyadenylate-binding protein | HC |
chr3:47012095-47003272 | 20130731
Length = 622
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 81/173 (46%), Gaps = 10/173 (5%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI--M 65
+++ +S ++ LK FG+YG + V+MRD + G+++ FGFV F ++ A + +
Sbjct: 205 VYVKNLSESVTDDDLKNTFGEYGTITSAVVMRD-VDGKSKCFGFVNFENADAAAEAVEAL 263
Query: 66 DKHIIDGRTVEAKKAVPRDDQQN--VNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFK 123
+ D + KA+ + +++ R +++ L ++T+
Sbjct: 264 NGKKFDDKEWYVGKALKKYERELELKERHEQSMKETVDKFYGANLYLKNLDDSVTDEKLS 323
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMV 176
+ F +FGT+T ++ D RG GF+ + + E + L E+N KMV
Sbjct: 324 ELFSEFGTVTSCKILRDPQGIS-RGSGFVAFSTPEEATRAL----AEMNGKMV 371
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 71/155 (45%), Gaps = 14/155 (9%)
Query: 2 ESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAE 61
+S +FI + + + L + F +G ++ I D +G ++G+GFV F + A+
Sbjct: 108 KSGAANIFIKNLDRAIDHKALYDTFSIFGNILSCKIAMDA-SGLSKGYGFVQFENEESAQ 166
Query: 62 RVI--MDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITE 119
I ++ +++ + V + D+ N ++V L ++T+
Sbjct: 167 SAIDKLNGMLLNDKPVYVGHFQRKQDRDNA----------LSNAKFNNVYVKNLSESVTD 216
Query: 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITY 154
D K F ++GTIT VVM D + + + FGF+ +
Sbjct: 217 DDLKNTFGEYGTITSAVVMRDVDG-KSKCFGFVNF 250
>Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:9308768-9310458 | 20130731
Length = 134
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAER--VI 64
K+F+ G+++ T EE L E F +YG V++ I+ ++ R +GFG+V FA+ A + +
Sbjct: 33 KIFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIG 92
Query: 65 MDKHIIDGRTVEAKKAVPRDDQQNVNRQ 92
M+ I+ GR + P ++Q+N +Q
Sbjct: 93 MNGKILHGRVLYVDMD-PPNEQKNKIKQ 119
>Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8413608-8404220 | 20130731
Length = 235
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 9/164 (5%)
Query: 5 LGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFAD----SAVA 60
L KL++G I + + L++ ++G V + +M D+ + R+R F FV +A A
Sbjct: 59 LRKLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDANAAA 118
Query: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITES 120
E+ ++ I GR ++ + + Q K++VG L +T
Sbjct: 119 EK--LNGTEIGGREIKVNITEKPLTTEGLPVQAGESTFVDSPY---KVYVGNLAKNVTSD 173
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
KK+F + G V T + GFGF+T+ S+E V+ +
Sbjct: 174 SLKKFFSEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAAI 217
>Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC |
chr2:7987418-7992129 | 20130731
Length = 401
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 68/165 (41%), Gaps = 16/165 (9%)
Query: 8 LFIGGISWDTNEEHLKEYF-GKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
+F+G ++ D + L+E F +Y V ++ DRLTGR++G+GFV FAD R +
Sbjct: 157 IFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTE 216
Query: 65 MDKHIIDGRTVEAKKAV---PRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESD 121
M + R + A P Q IFVG L +T+
Sbjct: 217 MQGVLCSTRPMRIGPATNKNPAATTQPKASYNPSGGQSENDPNNTTIFVGNLDPNVTDDH 276
Query: 122 FKKYFDQFGTITDVVVMYDHNTQRPRG--FGFITYDSEEAVDKVL 164
++ F Q+G + V + P G GF+ + ++ +
Sbjct: 277 LRQVFTQYGELVHVKI--------PSGKRCGFVQFSDRSCAEEAI 313
>Medtr2g069490.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr2:28910323-28904195 | 20130731
Length = 415
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI--M 65
L + +S + NE HLKE F +GEV+ V ++ DR +G+G+V F AE+ + M
Sbjct: 102 LHVEKLSRNVNEGHLKEIFSNFGEVVSVELVMDRAVNLPKGYGYVHFKTRGEAEKALLYM 161
Query: 66 DKHIIDGRTVEAKKAVP 82
D IDG V+A+ +P
Sbjct: 162 DGAQIDGNVVKARFTLP 178
>Medtr4g036415.1 | splicing factor-like protein | HC |
chr4:13104578-13109685 | 20130731
Length = 767
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 2 ESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAE 61
E D L+IG + ++ L + F ++GE++ +++DR+TG ++G+GFV +AD +A
Sbjct: 447 EIDDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRITGLSKGYGFVKYADITMAN 506
Query: 62 RVI--MDKHIIDGRTVEAKKA 80
I M+ + ++GRT+ + A
Sbjct: 507 NAIVAMNGYRLEGRTIAVRVA 527
>Medtr8g076100.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 941
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 72/153 (47%), Gaps = 27/153 (17%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
++F+GG+ DT EE LK+ F + GEV+EV + ++ T + RG+ V FA+ A++ +
Sbjct: 419 EIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALSE 478
Query: 65 MDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKK 124
M +I G+ P +D +F+G + +T T+ K+
Sbjct: 479 MKNPVIRGKRC---GTSPSEDNDT-------------------LFLGNICNTWTKEAVKQ 516
Query: 125 YFDQFGT--ITDVVVMYD-HNTQRPRGFGFITY 154
+G + ++ ++ D + RGF F+ +
Sbjct: 517 KLKDYGVEGVENITLVPDVQHEGLSRGFAFLEF 549
>Medtr7g109810.2 | flowering time control FCA-like protein | HC |
chr7:44985779-44978011 | 20130731
Length = 385
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 86/177 (48%), Gaps = 28/177 (15%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFV---VFADSAVAERV 63
K+++ + +E ++ F YG ++EVV++RD+ TG +G V F ++ +A +
Sbjct: 75 KVYVAPVPRTASEADVRLVFQGYGTIVEVVLLRDKATGVRQGSCLVKYSTFDEADMAIKA 134
Query: 64 IMDKHIIDG-------RTVEAKKAV--PRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLP 114
+ +++ G R + K+ RD QN+ R+ K++VG +
Sbjct: 135 LSNQYTFPGESSPVVVRFADRKRERFGLRDFCQNMERR-------DPPEVVGKVYVGCIN 187
Query: 115 STITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEE---AVDKVLYKTF 168
+ ++ + ++ F +G I DVVV+ R RG+GF+ + + E A K L +TF
Sbjct: 188 NEASKQEIEEIFSPYGHIEDVVVL------RNRGYGFVKFYNREMALAAIKGLDRTF 238
>Medtr8g076100.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 941
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 72/153 (47%), Gaps = 27/153 (17%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
++F+GG+ DT EE LK+ F + GEV+EV + ++ T + RG+ V FA+ A++ +
Sbjct: 419 EIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALSE 478
Query: 65 MDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKK 124
M +I G+ P +D +F+G + +T T+ K+
Sbjct: 479 MKNPVIRGKRC---GTSPSEDNDT-------------------LFLGNICNTWTKEAVKQ 516
Query: 125 YFDQFGT--ITDVVVMYD-HNTQRPRGFGFITY 154
+G + ++ ++ D + RGF F+ +
Sbjct: 517 KLKDYGVEGVENITLVPDVQHEGLSRGFAFLEF 549
>Medtr8g076100.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 989
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 72/153 (47%), Gaps = 27/153 (17%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
++F+GG+ DT EE LK+ F + GEV+EV + ++ T + RG+ V FA+ A++ +
Sbjct: 419 EIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALSE 478
Query: 65 MDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKK 124
M +I G+ P +D +F+G + +T T+ K+
Sbjct: 479 MKNPVIRGKRC---GTSPSEDNDT-------------------LFLGNICNTWTKEAVKQ 516
Query: 125 YFDQFGT--ITDVVVMYD-HNTQRPRGFGFITY 154
+G + ++ ++ D + RGF F+ +
Sbjct: 517 KLKDYGVEGVENITLVPDVQHEGLSRGFAFLEF 549
>Medtr7g109810.1 | flowering time control FCA-like protein | HC |
chr7:44985779-44978011 | 20130731
Length = 498
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 86/177 (48%), Gaps = 28/177 (15%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFV---VFADSAVAERV 63
K+++ + +E ++ F YG ++EVV++RD+ TG +G V F ++ +A +
Sbjct: 75 KVYVAPVPRTASEADVRLVFQGYGTIVEVVLLRDKATGVRQGSCLVKYSTFDEADMAIKA 134
Query: 64 IMDKHIIDG-------RTVEAKKAV--PRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLP 114
+ +++ G R + K+ RD QN+ R+ K++VG +
Sbjct: 135 LSNQYTFPGESSPVVVRFADRKRERFGLRDFCQNMERR-------DPPEVVGKVYVGCIN 187
Query: 115 STITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEE---AVDKVLYKTF 168
+ ++ + ++ F +G I DVVV+ R RG+GF+ + + E A K L +TF
Sbjct: 188 NEASKQEIEEIFSPYGHIEDVVVL------RNRGYGFVKFYNREMALAAIKGLDRTF 238
>Medtr5g079870.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:34159851-34164480 | 20130731
Length = 249
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 2 ESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADS--AV 59
ES+ G L + I D E L+ F ++G V +V I +D +G+ RGF FV F D+ A
Sbjct: 43 ESNNGSLLVRNIPLDCRPEELRAPFERFGPVRDVYIPKDYYSGQPRGFAFVQFVDAYEAS 102
Query: 60 AERVIMDKHIIDGRTV 75
+ MD+ I GR +
Sbjct: 103 EAQYHMDRQIFAGREI 118
>Medtr6g040190.1 | polyadenylate-binding protein | LC |
chr6:14408733-14404765 | 20130731
Length = 623
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 17/177 (9%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMDK 67
+++ +S E LK+ F +G + V+IM+ G ++ FGFV F S A +
Sbjct: 202 VYVKNLSESYTYEDLKQLFNSFGVITSVLIMKYD-NGNSKCFGFVNFQSSDSAATAV--- 257
Query: 68 HIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKK--------IFVGGLPSTITE 119
++G T K + Q + + K+ +++ + ++ E
Sbjct: 258 EKLNGSTTNDGKVLFVGRAQKKSEREAELKAFFEQEKLKRYEKFQGANLYLKNIDKSLNE 317
Query: 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMV 176
K+ F +FGTIT VM D R +G GF+ + + E K + E+N K++
Sbjct: 318 EKLKELFSEFGTITSCKVMSDARG-RSKGVGFVAFTTPEEASKAI----DEMNGKII 369
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 67/163 (41%), Gaps = 16/163 (9%)
Query: 5 LGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI 64
LFI + + + L E F +G V+ + D G ++G GFV F + A+ I
Sbjct: 112 FANLFIKNLETSIDNKALHETFSVFGNVLSCKVAMDS-NGHSKGHGFVQFDNDQSAKNAI 170
Query: 65 MDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKK 124
+DG + KK V ++V L + T D K+
Sbjct: 171 ---EKLDGMLMNDKK---------VYVGYFVRCQERSSPKFTNVYVKNLSESYTYEDLKQ 218
Query: 125 YFDQFGTITDVVVM-YDHNTQRPRGFGFITYDSEEAVDKVLYK 166
F+ FG IT V++M YD+ + FGF+ + S ++ + K
Sbjct: 219 LFNSFGVITSVLIMKYDNGNS--KCFGFVNFQSSDSAATAVEK 259
>Medtr5g079870.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:34159814-34164480 | 20130731
Length = 286
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 2 ESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADS--AV 59
ES+ G L + I D E L+ F ++G V +V I +D +G+ RGF FV F D+ A
Sbjct: 43 ESNNGSLLVRNIPLDCRPEELRAPFERFGPVRDVYIPKDYYSGQPRGFAFVQFVDAYEAS 102
Query: 60 AERVIMDKHIIDGRTV 75
+ MD+ I GR +
Sbjct: 103 EAQYHMDRQIFAGREI 118
>Medtr4g094235.1 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr4:37499515-37504601 | 20130731
Length = 280
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 3 SDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFV--VFADSAVA 60
SD L + I++ T + L F KYG+V+++ I +DR TG +RGF FV +AD A
Sbjct: 13 SDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASK 72
Query: 61 ERVIMDKHIIDGRTV 75
+D ++DGR +
Sbjct: 73 AVDRLDGRMVDGREI 87
>Medtr4g094235.3 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr4:37499504-37504601 | 20130731
Length = 280
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 3 SDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFV--VFADSAVA 60
SD L + I++ T + L F KYG+V+++ I +DR TG +RGF FV +AD A
Sbjct: 13 SDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASK 72
Query: 61 ERVIMDKHIIDGRTV 75
+D ++DGR +
Sbjct: 73 AVDRLDGRMVDGREI 87
>Medtr4g094235.2 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr4:37499531-37504526 | 20130731
Length = 281
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 3 SDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFV--VFADSAVA 60
SD L + I++ T + L F KYG+V+++ I +DR TG +RGF FV +AD A
Sbjct: 13 SDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASK 72
Query: 61 ERVIMDKHIIDGRTV 75
+D ++DGR +
Sbjct: 73 AVDRLDGRMVDGREI 87
>Medtr4g094235.4 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr4:37499531-37504601 | 20130731
Length = 281
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 3 SDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFV--VFADSAVA 60
SD L + I++ T + L F KYG+V+++ I +DR TG +RGF FV +AD A
Sbjct: 13 SDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASK 72
Query: 61 ERVIMDKHIIDGRTV 75
+D ++DGR +
Sbjct: 73 AVDRLDGRMVDGREI 87
>Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein,
putative | HC | chr1:41816599-41813158 | 20130731
Length = 284
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 9/133 (6%)
Query: 49 FGFVVFADSAVAERV-----IMDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXX 103
FGF D A + ++ D E K R+ + ++N
Sbjct: 130 FGFCCELDEDCAHELSGVPGVLSVQPDDNFESENKDYEGRNLENSLNMPNSSEASQEASV 189
Query: 104 XTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
TKK+FV GL +E + F+ FG + +V V+ D ++R +G+ FI Y +EEA
Sbjct: 190 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIIDKISKRSKGYAFIEYTTEEAASAA 249
Query: 164 LYKTFHELNAKMV 176
L E+N K++
Sbjct: 250 L----KEMNGKII 258
>Medtr5g070450.3 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 3 SDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFV--VFADSAVA 60
+D L + I++ T + L F KYG+V+++ I RDR TG +RGF FV +AD A
Sbjct: 13 ADTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASK 72
Query: 61 ERVIMDKHIIDGRTV 75
+D ++DGR +
Sbjct: 73 AVDRLDGRMVDGREI 87
>Medtr5g070450.4 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 3 SDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFV--VFADSAVA 60
+D L + I++ T + L F KYG+V+++ I RDR TG +RGF FV +AD A
Sbjct: 13 ADTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASK 72
Query: 61 ERVIMDKHIIDGRTV 75
+D ++DGR +
Sbjct: 73 AVDRLDGRMVDGREI 87
>Medtr5g070450.2 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 3 SDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFV--VFADSAVA 60
+D L + I++ T + L F KYG+V+++ I RDR TG +RGF FV +AD A
Sbjct: 13 ADTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASK 72
Query: 61 ERVIMDKHIIDGRTV 75
+D ++DGR +
Sbjct: 73 AVDRLDGRMVDGREI 87
>Medtr5g070450.1 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 3 SDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFV--VFADSAVA 60
+D L + I++ T + L F KYG+V+++ I RDR TG +RGF FV +AD A
Sbjct: 13 ADTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASK 72
Query: 61 ERVIMDKHIIDGRTV 75
+D ++DGR +
Sbjct: 73 AVDRLDGRMVDGREI 87
>Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:37745112-37734961 | 20130731
Length = 865
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 53/93 (56%), Gaps = 4/93 (4%)
Query: 3 SDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAER 62
S+ +LF+ + + T EE L+E+F ++G V + ++ D+ T R++G ++ F+ A R
Sbjct: 326 SEPCRLFVRNLPYSTTEEELEEHFSQFGSVSQAHLVVDKDTKRSKGIAYIHFSAPEFAAR 385
Query: 63 VI--MDKHIIDGRTVEAKKAVPR--DDQQNVNR 91
+ D I GR + A+PR ++++N N+
Sbjct: 386 ALEESDNSIFQGRLLHVMPAIPRHSNNEENKNQ 418
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 73/164 (44%), Gaps = 15/164 (9%)
Query: 8 LFIGGISWDTNEEHLKEYFGKY---GEVIEVVIMRDRLTGR--ARGFGFVVFADSAVAER 62
LF+ +++ T +E L+E+F ++ G ++ V + + G+ + GFGFV F + A
Sbjct: 643 LFVKNLNFKTTDEVLREHFSEHMKEGRILSVKVKKHLKNGKNVSMGFGFVEFDSTETATS 702
Query: 63 VIMDKH--IIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITES 120
V D ++DG + + ++D V ++ + K+ V + TE
Sbjct: 703 VCNDLQGTVLDGHALILQLCHVKNDDDKVQKK------VEKDKSSTKLLVKNVAFEATEK 756
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
D ++ F FG I + + RGF F+ Y +++ L
Sbjct: 757 DLRQLFSPFGQIKSLRLPMKFGNH--RGFAFVEYVTQQEAQNAL 798
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYK 166
++FV LP + TE + +++F QFG+++ ++ D +T+R +G +I + + E + L +
Sbjct: 330 RLFVRNLPYSTTEEELEEHFSQFGSVSQAHLVVDKDTKRSKGIAYIHFSAPEFAARALEE 389
Query: 167 TFHEL-NAKMVEVKRAVPKELSPDPNRS 193
+ + + +++ V A+P+ + + N++
Sbjct: 390 SDNSIFQGRLLHVMPAIPRHSNNEENKN 417
>Medtr3g029580.2 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr3:9308768-9310458 | 20130731
Length = 137
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERV 63
K+F+ G+++ T EE L E F +YG V++ I+ ++ R +GFG+V FA+ A +
Sbjct: 33 KIFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKA 89
>Medtr7g109810.3 | flowering time control FCA-like protein | HC |
chr7:44985779-44980846 | 20130731
Length = 288
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 86/177 (48%), Gaps = 28/177 (15%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFV---VFADSAVAERV 63
K+++ + +E ++ F YG ++EVV++RD+ TG +G V F ++ +A +
Sbjct: 75 KVYVAPVPRTASEADVRLVFQGYGTIVEVVLLRDKATGVRQGSCLVKYSTFDEADMAIKA 134
Query: 64 IMDKHIIDG-------RTVEAKKAV--PRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLP 114
+ +++ G R + K+ RD QN+ R+ K++VG +
Sbjct: 135 LSNQYTFPGESSPVVVRFADRKRERFGLRDFCQNMERR-------DPPEVVGKVYVGCIN 187
Query: 115 STITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEE---AVDKVLYKTF 168
+ ++ + ++ F +G I DVVV+ R RG+GF+ + + E A K L +TF
Sbjct: 188 NEASKQEIEEIFSPYGHIEDVVVL------RNRGYGFVKFYNREMALAAIKGLDRTF 238
>Medtr7g094670.1 | mRNA capping enzyme, putative | LC |
chr7:37775862-37750453 | 20130731
Length = 1678
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 53/93 (56%), Gaps = 4/93 (4%)
Query: 3 SDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAER 62
S+ +LF+ + + T EE L+E+F ++G V +V ++ D+ T R++G F+ F+ A R
Sbjct: 896 SEPCRLFVRNLPYSTTEEELEEHFSQFGSVSQVHLVVDKDTKRSKGRAFIHFSVPEFAAR 955
Query: 63 VI--MDKHIIDGRTVEAKKAVP--RDDQQNVNR 91
+ D I GR + A+P ++++N N+
Sbjct: 956 ALEESDNSIFQGRLLHVIAAIPIHSNNEENKNQ 988
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYK 166
++FV LP + TE + +++F QFG+++ V ++ D +T+R +G FI + E + L +
Sbjct: 900 RLFVRNLPYSTTEEELEEHFSQFGSVSQVHLVVDKDTKRSKGRAFIHFSVPEFAARALEE 959
Query: 167 TFHEL-NAKMVEVKRAVP 183
+ + + +++ V A+P
Sbjct: 960 SDNSIFQGRLLHVIAAIP 977
>Medtr3g462330.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:24877263-24880115 | 20130731
Length = 340
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 12/147 (8%)
Query: 108 IFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDK-VLYK 166
++V GL IT+ + +K+F G + DV ++ D T+ RGFGF+T D+ E D+ V Y
Sbjct: 47 LYVTGLSPRITKRELEKHFSAKGKVVDVHLVVDPWTRESRGFGFVTMDTLEEADRCVKYL 106
Query: 167 TFHELNAKMVEVKRA---------VPKELSPDPNRSPLIGYNYGLNRASSYLNIYAQGYS 217
L +++ V++A K L R +Y R+ SY + Y + Y+
Sbjct: 107 NRSVLEGRVITVEKARRRRGRTPTPGKYLGLKTIRGRRRSPSYSPRRSPSY-SPYRRSYN 165
Query: 218 MSPIGGHGVRMNGRFSPLTSVRTGFSP 244
SP R +SP R +SP
Sbjct: 166 RSPYSSDHSRSRS-YSPDYRRRRSYSP 191
>Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 71/155 (45%), Gaps = 27/155 (17%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
++F+GG+ D E+ L++ F + G V EV +M + T + +GF F+ F + A+R +
Sbjct: 215 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 274
Query: 65 MDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKK 124
+ +I+G+ P D + +++G + T T+ K+
Sbjct: 275 LKNPVINGKQC---GVTPSQD-------------------SDTLYLGNICKTWTKEALKE 312
Query: 125 YFDQFGT--ITDVVVMYDHNTQ-RPRGFGFITYDS 156
+G + D+ ++ D N + RGF F+ + S
Sbjct: 313 KLKHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSS 347
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 36/58 (62%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
++FVGGL TE D +K F + G +T+V +M + T++ +GF F+ +++ E + +
Sbjct: 215 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAV 272
>Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 71/155 (45%), Gaps = 27/155 (17%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
++F+GG+ D E+ L++ F + G V EV +M + T + +GF F+ F + A+R +
Sbjct: 215 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 274
Query: 65 MDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKK 124
+ +I+G+ P D + +++G + T T+ K+
Sbjct: 275 LKNPVINGKQC---GVTPSQD-------------------SDTLYLGNICKTWTKEALKE 312
Query: 125 YFDQFGT--ITDVVVMYDHNTQ-RPRGFGFITYDS 156
+G + D+ ++ D N + RGF F+ + S
Sbjct: 313 KLKHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSS 347
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 36/58 (62%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
++FVGGL TE D +K F + G +T+V +M + T++ +GF F+ +++ E + +
Sbjct: 215 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAV 272
>Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 27/155 (17%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
++F+GG+ D E+ L++ F + G V EV +M + T + +GF F+ F + A+R +
Sbjct: 216 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 275
Query: 65 MDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKK 124
+ +I+G+ P D +++G + T T+ K+
Sbjct: 276 LKNPVINGKQC---GVTPSQDSDT-------------------LYLGNICKTWTKEALKE 313
Query: 125 YFDQFGT--ITDVVVMYDHNTQ-RPRGFGFITYDS 156
+G + D+ ++ D N + RGF F+ + S
Sbjct: 314 KLKHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSS 348
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 36/58 (62%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
++FVGGL TE D +K F + G +T+V +M + T++ +GF F+ +++ E + +
Sbjct: 216 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAV 273
>Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 27/155 (17%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
++F+GG+ D E+ L++ F + G V EV +M + T + +GF F+ F + A+R +
Sbjct: 216 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 275
Query: 65 MDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKK 124
+ +I+G+ P D +++G + T T+ K+
Sbjct: 276 LKNPVINGKQC---GVTPSQDSDT-------------------LYLGNICKTWTKEALKE 313
Query: 125 YFDQFGT--ITDVVVMYDHNTQ-RPRGFGFITYDS 156
+G + D+ ++ D N + RGF F+ + S
Sbjct: 314 KLKHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSS 348
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 36/58 (62%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
++FVGGL TE D +K F + G +T+V +M + T++ +GF F+ +++ E + +
Sbjct: 216 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAV 273
>Medtr6g477870.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr6:28646362-28643393 | 20130731
Length = 169
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 39/62 (62%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
+L++ G+S+ T EE L+ F +G++++V ++ D++ R RGF F+ +A +++ I
Sbjct: 96 RLYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPRGFAFLRYATEEESKKAIEG 155
Query: 67 KH 68
H
Sbjct: 156 MH 157
>Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:52075123-52071412 | 20130731
Length = 490
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 85/200 (42%), Gaps = 33/200 (16%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-M 65
K+++GGI + ++E+ + YF G + E+ M TG+ RG + F A A+R + +
Sbjct: 221 KVYVGGIPYYSSEDDIHSYFEGCGTITEINCMTFPDTGKFRGIAIISFKTEAAAKRALAL 280
Query: 66 DKHIIDG--------RTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTI 117
D + G + +A + P + ++ NR I+VG L I
Sbjct: 281 DGADMGGLFLKIQPCKATQATRFTP-EMKEGYNR----------------IYVGSLSWEI 323
Query: 118 TESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVE 177
TE + +K+F + + + D T RG+ + + +++ L L + V
Sbjct: 324 TEEELRKFFSNC-NVKAIRLGMDKETGEFRGYAHVDFGDSQSLKTALALDQSVLFGRPVR 382
Query: 178 VKRAVPKELSPDPNRSPLIG 197
+ AVP N+ P+ G
Sbjct: 383 ISCAVP------LNKKPVAG 396
>Medtr1g048080.1 | pentatricopeptide (PPR) repeat protein | HC |
chr1:18204785-18193518 | 20130731
Length = 952
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHN-TQRPRGFGFITYDSEEAVDKVL 164
KIF+G LP + + + ++F QFG I V+++ HN R GFGF+ Y+ E A + +
Sbjct: 160 KIFIGNLPGWVKKQEVSEFFRQFGPINSVILIRGHNDVSRNAGFGFVIYEGETAENSAM 218
>Medtr5g070100.1 | RNA recognition motif (RRM) containing protein
| HC | chr5:29707444-29702897 | 20130731
Length = 393
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 35/50 (70%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADS 57
+F+GGI +D E + F +YGEV+++ ++RD+ TG+++GF F+ + D
Sbjct: 38 VFVGGIPFDFTEGDVIAVFAQYGEVVDINLVRDKGTGKSKGFAFIAYEDQ 87
>Medtr8g031560.1 | eukaryotic translation initiation factor 3
subunit G | HC | chr8:11851079-11853472 | 20130731
Length = 280
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 3 SDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAER 62
+D + + +S DT E L E FG +G V V + D+ TG +RGFGFV F + A+R
Sbjct: 196 NDENSVRVTNLSEDTREPDLHELFGTFGSVSRVYVAIDKNTGTSRGFGFVNFVNREDAQR 255
Query: 63 VI--MDKHIIDGRTVEAKKAVPR 83
I ++ + D ++ + A PR
Sbjct: 256 AINKLNGYGYDNLILKVEWATPR 278