Miyakogusa Predicted Gene

Lj6g3v0754260.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0754260.1 tr|Q00Y64|Q00Y64_OSTTA Hydroxymethylpyrimidine
kinase (ISS) OS=Ostreococcus tauri GN=Ot12g00960 PE=3,53.75,8e-18,no
description,Nucleotide-binding, alpha-beta plait; RNA recognition
motif,RNA recognition motif
dom,NODE_19222_length_1476_cov_73.412605.path2.1
         (477 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g058990.1 | RNA recognition motif, a.k.a. RRM, RBD protein...   159   4e-39
Medtr3g059000.1 | RNA recognition motif, a.k.a. RRM, RBD protein...   159   4e-39
Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    55   1e-07

>Medtr3g058990.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr3:23580379-23576089 | 20130731
          Length = 658

 Score =  159 bits (403), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 73/96 (76%), Positives = 81/96 (84%)

Query: 227 DLHWWTTDAELEAELCKYGQVKEVKFFDEKASGKSKGYCQVEFYEPSAAAACKDGMNEHE 286
           DLHWWTTDA+LEAELCKYGQVK+V+FFDEKASGKSKGYCQVEFY+P A  ACK+GMN H 
Sbjct: 192 DLHWWTTDADLEAELCKYGQVKDVRFFDEKASGKSKGYCQVEFYDPLATTACKEGMNGHL 251

Query: 287 FNGRACVVAYASPFTVKKMGEAQIARNQQGNVNQSA 322
           FNGR CVV+YA+P+TVKKMGEA   RNQ  N    A
Sbjct: 252 FNGRPCVVSYANPYTVKKMGEALNNRNQPMNPTAGA 287



 Score = 59.7 bits (143), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 40/77 (51%), Positives = 46/77 (59%), Gaps = 11/77 (14%)

Query: 401 ANPPLMHHQSMMNQGFDPAFGGPIGRMGNYGGFPGAPTPPFSGIMXXXXXXXXXXXXXXX 460
           A PP+MH       GFDP+FGGPIGR+G Y G+PG PTPPFSG+M               
Sbjct: 382 AGPPMMH------PGFDPSFGGPIGRVGGYAGYPGGPTPPFSGMM-----PSYPGMHGVA 430

Query: 461 XXXNPAFFGRGMHMNGM 477
              NP FFGRGMHMN +
Sbjct: 431 PHVNPGFFGRGMHMNAI 447



 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 2  EEGEGGDPMDHFHRNEAISAVADDGFLAEXXXXXXXXXXXXXXGEGFLQSLRKNDDSAFR 61
          E+GE G   D F+RNEAISAVADDGF+AE              GEGF QSL+K + S  +
Sbjct: 3  EDGEHGG--DQFYRNEAISAVADDGFMAEEDEDYEDLYNDVNVGEGFRQSLQKTELSEVK 60


>Medtr3g059000.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr3:23590838-23586291 | 20130731
          Length = 708

 Score =  159 bits (403), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 72/82 (87%), Positives = 76/82 (92%)

Query: 227 DLHWWTTDAELEAELCKYGQVKEVKFFDEKASGKSKGYCQVEFYEPSAAAACKDGMNEHE 286
           DLHWWTTDAELEAELCKYGQVKEV+F+DEKASGKSKGYCQVEFYE  AA ACK+GMN H 
Sbjct: 233 DLHWWTTDAELEAELCKYGQVKEVRFYDEKASGKSKGYCQVEFYEAYAATACKEGMNGHP 292

Query: 287 FNGRACVVAYASPFTVKKMGEA 308
           FNGR CVVA+ASPFTVKKMGEA
Sbjct: 293 FNGRPCVVAFASPFTVKKMGEA 314



 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/140 (45%), Positives = 63/140 (45%)

Query: 2   EEGEGGDPMDHFHRNEAISAVADDGFLAEXXXXXXXXXXXXXXGEGFLQSLRKNDDSAFR 61
           E GE GDPMD FHRNEAISAVADDGFLAE              GEGFLQSLRKNDDS  R
Sbjct: 3   EAGESGDPMDQFHRNEAISAVADDGFLAEEDDDYEDLYNDVNVGEGFLQSLRKNDDSGGR 62

Query: 62  NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGFRGNEXXXXXXXXXXX 121
                                                      GFRG             
Sbjct: 63  IEGVDEKKVQSGSGVQDPVVGVVGEGVKSVGVDESRVSGFQNQGFRGGNSGVGSGAGGGG 122

Query: 122 IRVELGQKSGKLSEIEEQSG 141
           IRVELGQ SGKLSEIEEQ G
Sbjct: 123 IRVELGQASGKLSEIEEQRG 142



 Score = 66.2 bits (160), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 43/75 (57%), Positives = 49/75 (65%)

Query: 403 PPLMHHQSMMNQGFDPAFGGPIGRMGNYGGFPGAPTPPFSGIMXXXXXXXXXXXXXXXXX 462
           PP+MH Q MMNQGFDPAF GP+GRM  +GG+PG P PPFSG+M                 
Sbjct: 423 PPMMHPQQMMNQGFDPAFAGPMGRMAGFGGYPGGPAPPFSGMMPQFPGVGGVGLPGVAPH 482

Query: 463 XNPAFFGRGMHMNGM 477
            NPAFFGRGM +NGM
Sbjct: 483 VNPAFFGRGMPVNGM 497


>Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr7:42674424-42676547 | 20130731
          Length = 140

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/93 (38%), Positives = 44/93 (47%), Gaps = 1/93 (1%)

Query: 228 LHWWTTDAELEAELCKYGQVKEVKFFDEKASGKSKGYCQVEFYEPSAAAACKDGMNEHEF 287
           L + TT+  L      YGQV E K   ++ S KSKGY  V F     A      MNE   
Sbjct: 39  LSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAITEMNEKAL 98

Query: 288 NGRACVVAYASPFTVKKMGEAQIARNQQGNVNQ 320
           NGR   V YA P T + MG   IAR    ++N+
Sbjct: 99  NGRVVFVDYAKPDTKRSMG-MPIARGPPEDLNK 130