Miyakogusa Predicted Gene

Lj6g3v0753090.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0753090.2 Non Characterized Hit- tr|K4CXD0|K4CXD0_SOLLC
Uncharacterized protein OS=Solanum lycopersicum GN=Sol,31.97,1e-18,RNA
RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN,NULL; FAMILY NOT
NAMED,NULL; seg,NULL,CUFF.58330.2
         (406 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g059000.1 | RNA recognition motif, a.k.a. RRM, RBD protein...   268   5e-72
Medtr3g058990.1 | RNA recognition motif, a.k.a. RRM, RBD protein...   259   4e-69

>Medtr3g059000.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr3:23590838-23586291 | 20130731
          Length = 708

 Score =  268 bits (686), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 162/286 (56%), Positives = 173/286 (60%), Gaps = 1/286 (0%)

Query: 122 PPLMHHQSMMNQGFDPAFGGPIGRMGNYGGFPGAPTPPFSGIMXXXXXXXXXXXXXXXXX 181
           PP+MH Q MMNQGFDPAF GP+GRM  +GG+PG P PPFSG+M                 
Sbjct: 423 PPMMHPQQMMNQGFDPAFAGPMGRMAGFGGYPGGPAPPFSGMMPQFPGVGGVGLPGVAPH 482

Query: 182 XNPAFFXXXXXXXXXXXXPTSGMDGPNMGMWSDPNMXXXXXXXXXXXXXXXSSYGEEAAS 241
            NPAFF            P SGMDGPNMGMW DPNM               SSYGEEAAS
Sbjct: 483 VNPAFFGRGMPVNGMGMMPQSGMDGPNMGMWPDPNMGGWGGEEPGGGRAGESSYGEEAAS 542

Query: 242 DHQYGEVNHDRAGWTNTTRDKDRGSERDWSGTSERRYRDDRDQGYERDAPSEKDMGHDHE 301
           DHQYGEVN DRAGW NT R+KDRGSERDWSG+SERRYRDDRDQGYERDAP EKD GHD E
Sbjct: 543 DHQYGEVNPDRAGWQNTMREKDRGSERDWSGSSERRYRDDRDQGYERDAPREKDAGHDPE 602

Query: 302 WSGRR-QXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADHHRYRDR 360
           W  R+ +                                            ADHHRYRDR
Sbjct: 603 WPERKHRDDREVVRERSRDRDRGREKSRDRERERGDRDRERDRYREDRDRYADHHRYRDR 662

Query: 361 EAEPDDELERGRSSRTHSKSRLSHDEEHHSRPRDADYGKRRRLTSE 406
           E E D+E ERGRSSRTHSKSR S DEEHHSR +DADYGKRRRLTSE
Sbjct: 663 EPEHDEEWERGRSSRTHSKSRFSQDEEHHSRSKDADYGKRRRLTSE 708



 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 23/27 (85%), Positives = 24/27 (88%)

Query: 1   MNEHEFNGRACVVAYASPFTVKKMGEA 27
           MN H FNGR CVVA+ASPFTVKKMGEA
Sbjct: 288 MNGHPFNGRPCVVAFASPFTVKKMGEA 314


>Medtr3g058990.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr3:23580379-23576089 | 20130731
          Length = 658

 Score =  259 bits (662), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 158/288 (54%), Positives = 169/288 (58%), Gaps = 12/288 (4%)

Query: 120 ANPPLMHHQSMMNQGFDPAFGGPIGRMGNYGGFPGAPTPPFSGIMXXXXXXXXXXXXXXX 179
           A PP+MH       GFDP+FGGPIGR+G Y G+PG PTPPFSG+M               
Sbjct: 382 AGPPMMH------PGFDPSFGGPIGRVGGYAGYPGGPTPPFSGMMPSYPGMHGVAPHV-- 433

Query: 180 XXXNPAFFXXXXXXXXXXXXPTSGMDGPNMGMWSDPNMXXXXXXXXXXXXXXXSSYGEEA 239
              NP FF            P SGMDGPNMGMW DPNM               SSYGEEA
Sbjct: 434 ---NPGFFGRGMHMNAIGMIPPSGMDGPNMGMWPDPNMGGWGGDELGGGKVAESSYGEEA 490

Query: 240 ASDHQYGEVNHDRAGWTNTTRDKDRGSERDWSGTSERRYRDDRDQGYERDAPSEKDMGHD 299
           ASDHQYGEVN DRAGW NT R+KDRGSERDWSG+SERRYRDDRDQGYERD P EKD GHD
Sbjct: 491 ASDHQYGEVNPDRAGWQNTMREKDRGSERDWSGSSERRYRDDRDQGYERDVPREKDAGHD 550

Query: 300 HEWSGRR-QXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADHHRYR 358
            EW  R+ +                                            ADHHRYR
Sbjct: 551 PEWPERKHRDDREVVRERSRDRDRGREKSRDRERERGDRDRERDRYREDRDRYADHHRYR 610

Query: 359 DREAEPDDELERGRSSRTHSKSRLSHDEEHHSRPRDADYGKRRRLTSE 406
           DRE E D+E ERGRSSRTHSKSR S DEEHHSR +DADYGKRRRLTSE
Sbjct: 611 DREPEHDEEWERGRSSRTHSKSRFSQDEEHHSRSKDADYGKRRRLTSE 658



 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 29/41 (70%)

Query: 1   MNEHEFNGRACVVAYASPFTVKKMGEAQIARNQQGNVNQSA 41
           MN H FNGR CVV+YA+P+TVKKMGEA   RNQ  N    A
Sbjct: 247 MNGHLFNGRPCVVSYANPYTVKKMGEALNNRNQPMNPTAGA 287