Miyakogusa Predicted Gene

Lj6g3v0727740.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0727740.2 Non Characterized Hit- tr|I1N089|I1N089_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.3490 PE=,84.28,0,no
description,NULL; no description,DNA-directed RNA polymerase, insert
domain; RNA_POL_D_30KD,DNA-d,CUFF.58190.2
         (387 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g060690.1 | DNA-directed RNA polymerase | HC | chr3:238090...   599   e-171
Medtr4g084150.1 | RPB3 DNA-directed RNA polymerase II subunit 3 ...   137   2e-32

>Medtr3g060690.1 | DNA-directed RNA polymerase | HC |
           chr3:23809029-23804183 | 20130731
          Length = 399

 Score =  599 bits (1545), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 292/379 (77%), Positives = 330/379 (87%), Gaps = 13/379 (3%)

Query: 19  ILDYIMNLESVPQKLPPHLELLRTRVLCNVDAPQHTDTIQYSGAYAALGVDNSLRFDDFC 78
           I DYIMNLE VP  LP HLEL +TRV CN+DAPQHTDTIQYSGAYAALGVDNS+R D+F 
Sbjct: 24  IPDYIMNLEDVPSTLPTHLELQKTRVFCNLDAPQHTDTIQYSGAYAALGVDNSVRLDNFY 83

Query: 79  KNFKVEVKRLTDDEMEFDMIGIDPAIANAFRRILISEVPTMALERVYIANNTSLVQDEVL 138
           +NFKVEVKR+TD+EMEFDMIGIDPA+ANAFRRILI+EVPTMA+ERVYIANNTSLVQDEVL
Sbjct: 84  QNFKVEVKRITDEEMEFDMIGIDPAVANAFRRILIAEVPTMAIERVYIANNTSLVQDEVL 143

Query: 139 AHRLGLVPINADPRLFEYPDNA-GENNEKNSIVFKLHVHCKKGQPRITVLSDQLKWLPNG 197
           +HRLGL+PI+ADP+LFEYPD+A GENNEKN+IVFK HV C+KGQPR+TV SD LKWLPNG
Sbjct: 144 SHRLGLIPIDADPKLFEYPDDAGGENNEKNTIVFKQHVRCEKGQPRLTVKSDTLKWLPNG 203

Query: 198 SELIAEDTKPNTDSKPKTFTSFTCSQDSLPEFSSNPPGPRYLDIIIDKLGPGQEIELEAH 257
           SELIAE TK   D  PKTFT+F  +Q SLP+FS + P P  LD+I+ KLGPGQEIELEAH
Sbjct: 204 SELIAEGTKSAADPAPKTFTTF--NQKSLPKFSKD-PAPYNLDVIVAKLGPGQEIELEAH 260

Query: 258 AVKGIGKTHAKWSPVSTAWYRMLPEVVLLEDVQDELAEELKNKCPLKVFDIEDIGKGKRR 317
           AVKGIGKTHAKWSPV+TAWYRMLPEVVL +DV+DELAEEL +KCP KVFDIEDIG+G+++
Sbjct: 261 AVKGIGKTHAKWSPVATAWYRMLPEVVLTKDVKDELAEELVSKCPAKVFDIEDIGRGRKK 320

Query: 318 AKVARPRDCTLCRECIRGG---------KEWEDRVSLRRVKDHFIFTVESTGALPPELLF 368
           A V   R CTLCRECIR           ++W DRVSLRRVKDHFIFT+ESTGA+PP++LF
Sbjct: 321 AVVKNARACTLCRECIREADEGEEGGEGEKWTDRVSLRRVKDHFIFTIESTGAIPPDVLF 380

Query: 369 TEAVKILEDKCERVITELS 387
           TEAVKILEDKCERVITELS
Sbjct: 381 TEAVKILEDKCERVITELS 399


>Medtr4g084150.1 | RPB3 DNA-directed RNA polymerase II subunit 3 |
           HC | chr4:32800588-32797325 | 20130731
          Length = 318

 Score =  137 bits (345), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 103/318 (32%), Positives = 165/318 (51%), Gaps = 40/318 (12%)

Query: 77  FCKNFKVEVKRLTDDEMEFDMIGIDPAIANAFRRILISEVPTMALERVYIANNTSLVQDE 136
           + +  +V+++ L DD M+F++   D ++ANA RR++ISEVPT+A++ V I  N+S++ DE
Sbjct: 6   YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 65

Query: 137 VLAHRLGLVPINADPRL---FEYPDNAGENN---EKNSIVFKLHVHCKKGQPRITVLSDQ 190
            +AHRLGL+P+ ++  +   F    +A + +   E  S+ F L V C         ++DQ
Sbjct: 66  FIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKC---------ITDQ 116

Query: 191 LKWLPNGSELIAEDTKPNTDSKPKTFTSFTCSQDSLPEFSSNPPGPRYLDIIIDKLGPGQ 250
              + +  +LI+ D        P    S            S+  G     III KL  GQ
Sbjct: 117 TLDV-SSKDLISSDHTVTPVDVPGGDASI----------ESDGRG-----IIIVKLRRGQ 160

Query: 251 EIELEAHAVKGIGKTHAKWSPVSTAWYRMLPEVVLLEDVQDELAEELK----NKCPLKVF 306
           E+ L A A KGIGK HAKWSP +T  +   P++ + ED+ + L  E K    +  P +VF
Sbjct: 161 ELRLRAIARKGIGKDHAKWSPAATVTFMYEPDIHINEDLMESLTLEEKKEWVDSSPTRVF 220

Query: 307 DIEDIGKGKRRAKVARPRDCTLCRECIRGGKEWE--DRVSLRRVKDHFIFTVESTGALPP 364
           DI+ +    ++  V  P   +   E I+  +       + +   +D FIFTVESTGA+  
Sbjct: 221 DIDPV---TQQVMVVDPEAYSYDDEVIKKAEAMGKPGLIEITAKQDSFIFTVESTGAVKA 277

Query: 365 ELLFTEAVKILEDKCERV 382
             L   +++IL+ K + V
Sbjct: 278 SQLLLNSIEILKQKLDAV 295