Miyakogusa Predicted Gene

Lj6g3v0647570.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0647570.1 Non Characterized Hit- tr|D7SL34|D7SL34_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,52.43,0.00000000000003, ,CUFF.58113.1
         (159 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g061480.1 | transmembrane protein, putative | HC | chr3:24...   149   1e-36

>Medtr3g061480.1 | transmembrane protein, putative | HC |
           chr3:24519509-24518105 | 20130731
          Length = 145

 Score =  149 bits (375), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 86/154 (55%), Positives = 108/154 (70%), Gaps = 10/154 (6%)

Query: 5   MQLLYFYKQPPSPLFPSLPRQLVHSD-QAIFKNSRVIIINPSSSFSSCCIVHAAKEDSEQ 63
           M+ L  YKQPP  LF SL +QL+H+D + IFK  R  +I  SSSF+SCCIVHA KEDS+Q
Sbjct: 1   MKPLSIYKQPPL-LFASLSKQLLHNDDRGIFKERR--LIKYSSSFNSCCIVHALKEDSKQ 57

Query: 64  YEIDPDKARESLKELDQQIQSLSNEQVSSPKVRVKVSDVKLAEDQVSGSGSGSGTDKIDI 123
           YEIDP+KARE+LKELDQ+IQSLSN +VSSPK  +KVS++K   ++V    +G    K++I
Sbjct: 58  YEIDPEKAREALKELDQKIQSLSNREVSSPK--LKVSEMKPTREEVISENNG----KLEI 111

Query: 124 SDXXXXXXXXXXXXXXIFYNVLFYTVIKPSIDGP 157
           S+              I YNVLF TVIKP+IDGP
Sbjct: 112 SESFLALLAGGLVLFTILYNVLFLTVIKPAIDGP 145