Miyakogusa Predicted Gene

Lj6g3v0647480.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0647480.1 Non Characterized Hit- tr|D8U4J9|D8U4J9_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,28.52,1e-17,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,Translocation protein Sec62; Sec62,Translocation protein
,CUFF.58107.1
         (364 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g061490.1 | translocation protein Sec62 | HC | chr3:245220...   645   0.0  

>Medtr3g061490.1 | translocation protein Sec62 | HC |
           chr3:24522002-24526054 | 20130731
          Length = 364

 Score =  645 bits (1665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/364 (85%), Positives = 331/364 (90%), Gaps = 3/364 (0%)

Query: 1   MKKSSGGAAEKKRVRRSSAPDLTSDAPPRKQAAKKDVFQVFAEKVRDHKDLVSRWAVLQE 60
           MKKSSGGAAEKKRVRRSSAPD ++D PPRKQA KKDV+QVFAEKVRDHK+LVSRWAVLQE
Sbjct: 1   MKKSSGGAAEKKRVRRSSAPDPSTDVPPRKQAVKKDVYQVFAEKVRDHKELVSRWAVLQE 60

Query: 61  TRVEYFRGKDFASFLKNHPEVKDILESDRNLETEDIANILLAKNLLVRCDRVVKTVRPGK 120
           TRVEYFRGKDF SFLKNHPEVKDILESDR+LETEDIANILL KNLLVRCDRVVKT+RPGK
Sbjct: 61  TRVEYFRGKDFVSFLKNHPEVKDILESDRSLETEDIANILLEKNLLVRCDRVVKTLRPGK 120

Query: 121 KKLSTWPAHLEIFPEQIFSENDAFFAWTFAKRHPLWQTLLSFFWPVLTLAICLFPVYPHR 180
           KKLSTWPAHLEIFPEQ FSENDAFFAWTF KRHPLWQTLLSFFWPVLTLAICLFPVYPH 
Sbjct: 121 KKLSTWPAHLEIFPEQAFSENDAFFAWTFVKRHPLWQTLLSFFWPVLTLAICLFPVYPHS 180

Query: 181 CKLLILYSCAGXXXXXXXXXXXRGAIFGALYIFLGKRVWFFPNILAEEATLGELFRFWPK 240
           CKLLILYSCAG           RG IFG LYI +GKR+WFFPNILAEEATL ELFRFWPK
Sbjct: 181 CKLLILYSCAGILFLILSLLLIRGTIFGVLYILVGKRIWFFPNILAEEATLRELFRFWPK 240

Query: 241 KDEEERPKWTTRIFYAVVAVLFILLLRHHAPDEAARARYQKRVSNIIDDVLEWSPSLALS 300
           KDEEERPKWTTRIFYAVVAVLFILLLRHHAPDEAARARYQKRVSNIIDDVLEWSPSLALS
Sbjct: 241 KDEEERPKWTTRIFYAVVAVLFILLLRHHAPDEAARARYQKRVSNIIDDVLEWSPSLALS 300

Query: 301 GMMDKQQNVSNATGSSDAASQASQTGPEDAAPADGSE--TFTEQYDTEEVMDNIEDAGEE 358
           GMMDK QNV+NATGS+DAASQ S TGPE  AP D ++  +F+EQY+TEEV++NIED GE+
Sbjct: 301 GMMDK-QNVTNATGSTDAASQGSTTGPEHEAPTDSNDEKSFSEQYNTEEVIENIEDVGED 359

Query: 359 DKQH 362
           DKQ+
Sbjct: 360 DKQY 363