Miyakogusa Predicted Gene
- Lj6g3v0622070.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v0622070.1 Non Characterized Hit- tr|I1N032|I1N032_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,84.96,0,HELICASE
SKI2W,NULL; seg,NULL; HELICASE_ATP_BIND_1,Helicase, superfamily 1/2,
ATP-binding domain; HE,CUFF.58098.1
(1257 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g462290.1 | RNA helicase, ATP-dependent, SK12/DOB1 protein... 2168 0.0
Medtr7g080730.1 | superkiller viralicidic activity-like protein ... 561 e-159
Medtr8g101340.1 | RNA helicase, ATP-dependent, SK12/DOB1 protein... 414 e-115
Medtr5g069360.1 | DEAD/DEAH-box RNA helicase | HC | chr5:2940354... 397 e-110
Medtr5g036660.1 | DEAD-box ATP-dependent RNA helicase ISE2 | HC ... 255 2e-67
Medtr1g008600.1 | ATP-binding; ATP-dependent helicase; DNA helic... 80 1e-14
Medtr4g011450.1 | U5 small nuclear ribonucleoprotein 200 kDa hel... 80 2e-14
Medtr4g011450.2 | U5 small nuclear ribonucleoprotein 200 kDa hel... 80 2e-14
Medtr2g064740.1 | U5 small nuclear ribonucleoprotein 200 kDa hel... 76 2e-13
Medtr4g008780.1 | U5 small nuclear ribonucleoprotein 200 kDa hel... 74 1e-12
Medtr2g030905.1 | U5 small nuclear ribonucleoprotein 200 kDa hel... 73 2e-12
Medtr3g025300.1 | U5 small nuclear ribonucleoprotein helicase | ... 72 4e-12
Medtr3g025300.2 | U5 small nuclear ribonucleoprotein helicase | ... 71 6e-12
Medtr7g075463.1 | ATP-binding; ATP-dependent helicase; DNA helic... 70 1e-11
Medtr7g075463.3 | ATP-binding; ATP-dependent helicase; DNA helic... 69 2e-11
Medtr7g075463.2 | ATP-binding; ATP-dependent helicase; DNA helic... 69 3e-11
Medtr7g075463.4 | ATP-binding; ATP-dependent helicase; DNA helic... 69 3e-11
Medtr4g008770.1 | U5 small nuclear ribonucleoprotein 200 kDa hel... 61 6e-09
Medtr1g007510.1 | DNA polymerase theta-like protein | HC | chr1:... 57 2e-07
>Medtr3g462290.1 | RNA helicase, ATP-dependent, SK12/DOB1 protein | HC
| chr3:24871545-24853513 | 20130731
Length = 1334
Score = 2168 bits (5618), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1049/1231 (85%), Positives = 1120/1231 (90%), Gaps = 4/1231 (0%)
Query: 28 PIWEPPFRRPVKGTWEPKFEEVNVSDMTAGAEESGPLPRTSAKDFVRGSINNRPFRPGGL 87
PIWEPPFRRPVK W+PKFEEV+VSD+ +GA ESGPLPRTSAKDFVRGSINNRPFRPGGL
Sbjct: 107 PIWEPPFRRPVKEKWKPKFEEVSVSDLASGAVESGPLPRTSAKDFVRGSINNRPFRPGGL 166
Query: 88 DDSQGLERTLPPGASNGEWVLEIFNGGPAQTIPPSSKQGLDLGFLKPYPCSWNVYKEANS 147
DDSQ L R+LPPGASNGEWV EI NGGPAQTIPPS KQGLDLG LK YP SWNVYK+A++
Sbjct: 167 DDSQNLNRSLPPGASNGEWVREILNGGPAQTIPPSLKQGLDLGALKRYPLSWNVYKDADT 226
Query: 148 RQGSSDENLSGLSVQFDDLFKKAWEEDAVGEQEEDGHLSEVVPVKLEAEVDTTXXXXXXX 207
+G DENLSGLSVQFDDLFKKAW+ED VGEQE DGHLSE V LEAEVDTT
Sbjct: 227 PKGPLDENLSGLSVQFDDLFKKAWDEDVVGEQE-DGHLSEGETVTLEAEVDTTEVSSKAS 285
Query: 208 XXXXXLDDILSADSEGSKLHLDGFSDEVGQQRKEAWAMYEDSERIADRFHELVPDMALDF 267
LDDILSADSEGS+LHL+G SD VGQ++K AWA EDSE IA RFHEL+PDMAL+F
Sbjct: 286 ESAMSLDDILSADSEGSQLHLEGLSDVVGQKQKLAWAKLEDSEEIAGRFHELIPDMALEF 345
Query: 268 PFELDAFQKEAIYYLEKGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISN 327
PFELDAFQK+AIYYLEKGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISN
Sbjct: 346 PFELDAFQKKAIYYLEKGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISN 405
Query: 328 QKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYV 387
QKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYV
Sbjct: 406 QKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYV 465
Query: 388 NDVERGVVWEEVIIMLPRHINIILLSATVPNTIEFADWIGRTKQKKIRLTGTTKRPVPLE 447
NDV+RGVVWEEVIIMLPRHINIILLSATVPNT+EFADWIGRTKQK+IR+TGTTKRPVPLE
Sbjct: 466 NDVDRGVVWEEVIIMLPRHINIILLSATVPNTVEFADWIGRTKQKEIRVTGTTKRPVPLE 525
Query: 448 HCLFYSGELYKICESETFLPQGLKAAKDASKRRHLTXXXXXXXX-XXXXXHDNARVQKGE 506
HCLFYSGE YKICE E FLPQGL+AAKDAS+++HLT HDNAR QK E
Sbjct: 526 HCLFYSGEFYKICEREIFLPQGLRAAKDASRKKHLTAGVSSGPKPGTSAGHDNARGQKRE 585
Query: 507 NTSRVKQHGTNFSRTGKGYQNNGNGQSNWRAEASMWLMFINKLSKKSLLPVIIFCFSKNR 566
NT R KQ+GTNFS TG GY NNGNGQS WR EASMWLM INKLSKKSLLPV+IFCFSKNR
Sbjct: 586 NTPRTKQYGTNFSGTGSGYHNNGNGQSRWRQEASMWLMLINKLSKKSLLPVVIFCFSKNR 645
Query: 567 CDRSADSMTGTDLTSSSEKSEIRLFCDKAFSRLKGSDRNLPQVVRVQNLLRRGIGVHHAG 626
CD+SADSMTGTDLTSSSEKSEIRLFCDKAFSRLKGSDRNLPQVVRV++LLRRGIGVHHAG
Sbjct: 646 CDKSADSMTGTDLTSSSEKSEIRLFCDKAFSRLKGSDRNLPQVVRVESLLRRGIGVHHAG 705
Query: 627 LLPIVKEVVEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDTLRKFGGKEFRQLLPGEYT 686
LLPIVKEVVEMLFCRGV+KVLFSTETFAMGVNAPARTVVFDT+RKF GKEFRQLLPGEYT
Sbjct: 706 LLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDTVRKFDGKEFRQLLPGEYT 765
Query: 687 QMAGRAGRRGLDKIGTGILMCRDRDELPEERDLKDVTVGSATHLESQFRLTYIMILHLLR 746
QMAGRAGRRGLD IGT ILMCRD ELPEE DLK V VGSAT LESQFRLTYIMILHLLR
Sbjct: 766 QMAGRAGRRGLDNIGTVILMCRD--ELPEESDLKHVIVGSATRLESQFRLTYIMILHLLR 823
Query: 747 VEELKVEDMLKRSFAEFHAQKKLPEMQQILKLKLNQPTKAIECIKGEPTIEEYYNLYSEA 806
VEELKVEDMLKRSFAEFHAQ+KLPEMQQ+LK KLNQP + IECIKGEPTIEEYY+LY EA
Sbjct: 824 VEELKVEDMLKRSFAEFHAQEKLPEMQQLLKTKLNQPKRVIECIKGEPTIEEYYDLYMEA 883
Query: 807 EKYSNQISEAILQSPNVQPFLNTGRVVIVKSESTQDHLLAVVVKTPSQNNKLYIVFMIKP 866
E Y+NQISEAIL SPNV PFLNTGRVV++KSES QDHLLAV+VKTPS +NKLYIVF+I+P
Sbjct: 884 ETYNNQISEAILLSPNVTPFLNTGRVVVIKSESAQDHLLAVIVKTPSPSNKLYIVFVIRP 943
Query: 867 DMPSPVEKASSSGNFQDKSSAFDQGYFVKPKSRRDVEDQYTISVSARKAKGVINIKLPYR 926
DM PVE ASS GN QDKSS FDQG+FV PKSRR + D+YT SVSARK +GVINIKLP+R
Sbjct: 944 DMSFPVENASSGGNSQDKSSTFDQGFFVMPKSRRGLVDEYTTSVSARKGRGVINIKLPHR 1003
Query: 927 GSACGMSYEVREVDSKEFLCICNRKIKIDQVGLLEDVNKSVYSKTVQLLLDLKSDGNKYP 986
GSACGMSYEVREVD KEFLCIC+ KIKIDQVGLLEDV+ SVY+KTV+LL DLKSDGNKYP
Sbjct: 1004 GSACGMSYEVREVDIKEFLCICSSKIKIDQVGLLEDVSSSVYAKTVKLLQDLKSDGNKYP 1063
Query: 987 PALDPVKDLKLKDVELVTTYREWTKLLEKMSQNQCHGCIKLEEHLKLAKEIKTHKDEVYE 1046
PALDPVKDLKL++ +LV TYR+WTKLLEKMSQNQC+GCIKL EHLKLAKEIK HK+EV
Sbjct: 1064 PALDPVKDLKLREAKLVETYRKWTKLLEKMSQNQCNGCIKLAEHLKLAKEIKAHKEEVCS 1123
Query: 1047 LQFQMSDGALKQMPDFQGRIDVLKEIGCIDEDLVVQMKGRVACEMNSGEELICTECLFEN 1106
LQ+QMSD AL+QMPDFQGRIDVLKEIGCIDEDLVVQMKGRVACEMNSGEELICTECLFEN
Sbjct: 1124 LQYQMSDEALQQMPDFQGRIDVLKEIGCIDEDLVVQMKGRVACEMNSGEELICTECLFEN 1183
Query: 1107 QLDDLEPEEAVALMSAFVFQQKNTSEPSLTPKLAEARHRLFKTAIRLGELQAHFNLPISP 1166
QLD+LEPEE VALMSAFVFQQKN SEPSLTP+L++A++RL+KTAIRLGELQA FNLPISP
Sbjct: 1184 QLDELEPEEVVALMSAFVFQQKNASEPSLTPRLSDAKNRLYKTAIRLGELQAQFNLPISP 1243
Query: 1167 EEYAQENLKCGLVEVVYEWAKGTPFAEICELTDVPEGLIVRTIVRLDETCREFKNAAAIM 1226
EEYAQENLK GLVEVVYEWAKGTPFA+ICELTDVPEGLIVRTIVRLDETCREFKN+AAIM
Sbjct: 1244 EEYAQENLKFGLVEVVYEWAKGTPFADICELTDVPEGLIVRTIVRLDETCREFKNSAAIM 1303
Query: 1227 GNSALCRKMEIASNAIKRDIVFAASLYVTGV 1257
GNSALC+KMEIASNAIKRDIVFAASLY+TGV
Sbjct: 1304 GNSALCKKMEIASNAIKRDIVFAASLYITGV 1334
>Medtr7g080730.1 | superkiller viralicidic activity-like protein | HC
| chr7:30721960-30732583 | 20130731
Length = 983
Score = 561 bits (1446), Expect = e-159, Method: Compositional matrix adjust.
Identities = 354/1006 (35%), Positives = 550/1006 (54%), Gaps = 91/1006 (9%)
Query: 264 ALDFPFELDAFQKEAIYYLEKGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIK 323
A FPF LD FQ ++I LE ESV V+AHTSAGKTVVA YA A++ ++ R +YT+PIK
Sbjct: 54 AKTFPFTLDPFQSQSITCLENSESVMVSAHTSAGKTVVALYAIAMSLRNKQRVIYTSPIK 113
Query: 324 TISNQKYRDFCGKF-DVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFD 382
+SNQKYR+F +F DVGL+TGDV++ P ASCL+MTTEI RSM Y+G+++ R++ W+IFD
Sbjct: 114 ALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEVTREVAWIIFD 173
Query: 383 EVHYVNDVERGVVWEEVIIMLPRHINIILLSATVPNTIEFADWIGRTKQKKIRLTGTTKR 442
EVHY+ D ERGVVWEE I+M P++ + LSATVPN EFADW+ + Q+ + T R
Sbjct: 174 EVHYMRDRERGVVWEESIVMSPKNARFVFLSATVPNAKEFADWVAKVHQQPCHIVYTDYR 233
Query: 443 PVPLEHCLFYSGE--LYKICES-----ETFLPQGLKA---AKDASKRRHLTXXXXXXXXX 492
P PL+H +F SG LY + + E + L A A D +++
Sbjct: 234 PTPLQHYIFPSGSEGLYLVVDEKGKFREDSFQKALNALIPAADGDRKK------------ 281
Query: 493 XXXXHDNARVQKGENTSRVKQHGTNFSRTGKGYQNNGNGQSNWRAEASMWLMFINKLSKK 552
+NA+ QKG GK AE S + + ++
Sbjct: 282 -----ENAKWQKG-------------LVLGKA------------AEESDIFKMVKMIIQR 311
Query: 553 SLLPVIIFCFSKNRCDRSADSMTGTDLTSSSEKSEIRLFCDKAFSRLKGSDRNLPQVVRV 612
PVI+F FSK C+ A M DL EK I A L D+ LPQV +
Sbjct: 312 QYDPVILFSFSKRECEFLAMQMAKMDLNGDIEKDNIEKIFWCAMDMLSDDDKKLPQVSNM 371
Query: 613 QNLLRRGIGVHHAGLLPIVKEVVEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDTLRKF 672
LL+RGIGVHH+GLLPI+KEV+E+LF G++K LF+TETF++G+N PA+TVVF +RKF
Sbjct: 372 LPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKF 431
Query: 673 GGKEFRQLLPGEYTQMAGRAGRRGLDKIGTGILMCRDRDELPEERDLKDVTVGSATHLES 732
G +FR + GEY QM+GRAGRRG+D G ILM DE E K++ G+A L S
Sbjct: 432 DGDKFRWITSGEYIQMSGRAGRRGIDDRGVCILMV---DEKMEPSTAKNMVKGAADSLNS 488
Query: 733 QFRLTYIMILHLLRVEELKVEDMLKRSFAEFHAQKKLPEMQQILKLKLNQPTKAIECIKG 792
F L+Y MIL+ +R E+ E++L+ SF +F A + +P++++ +K L + ++I I
Sbjct: 489 AFHLSYNMILNQMRCEDGDPENLLRNSFFQFQADRAIPDLEKQIK-TLEEERESI-VIDE 546
Query: 793 EPTIEEYYNLYSEAEKYSNQISEAILQSPNVQPFLNTGRVVIVKSESTQDHLLAVVVKTP 852
E ++++YYNL + + ++ + ++ + P+L GR+V ++ S+++ L+ + ++
Sbjct: 547 EDSLKDYYNLLEQHRSLNKEVHDIVISPRHCLPYLQPGRLVSLQCTSSEEDLVPIFIE-- 604
Query: 853 SQNNKLYIVFMIKPDMPSPVEKASSSGNFQDKSSAFDQGYFVKPKS---RRDVEDQYTIS 909
++L +I NF+ + +KP+ + D+ + ++
Sbjct: 605 ---DQLTWGLII---------------NFERIKGVSEDDANIKPEDASYKVDILTRCVVT 646
Query: 910 VSARKAKGVINIKLPYRGSACGMSYEVREVDSKEFLCICNRKIKIDQVGLLEDVNKSVYS 969
K V + L RG +S + +V++ I + ++ I + L + ++
Sbjct: 647 KDKLGKKSVEIVPLKERGEPIVVSIPISQVNA-----ISSLRLYIPKDLLPLEARENTLK 701
Query: 970 KTVQLLLDLKSDGNKYPPALDPVKDLKLKDVELVTTYREWTKLLEKMSQNQCHGCIKLEE 1029
K ++ L G P LDP +D+K++ R L +++ +++
Sbjct: 702 KVMETLSRFSEKG---LPLLDPEEDMKIQSNSYKKASRRIEALERLFERHEIAKSPLIKQ 758
Query: 1030 HLKLAKEIKTHKDEVYELQFQM-SDGALKQMPDFQGRIDVLKEIGCIDEDLVVQMKGRVA 1088
LK+ + + ++ ++ + S L + + R VL+ +G D VV +KG+VA
Sbjct: 759 KLKVFQRKQELTAKIKSIKKTLRSSTTLAFKDELKARKRVLRRLGYATSDNVVDLKGKVA 818
Query: 1089 CEMNSGEELICTECLFENQLDDLEPEEAVALMSAFVFQQKNTSEPSLTPKLAEARHRLFK 1148
CE++S +EL TE +F D++ EE ++L+S FV+++K +L +L
Sbjct: 819 CEISSADELTLTELMFNGVFKDIKVEEMISLLSCFVWREKINDAAKPREELDLLYAQLQD 878
Query: 1149 TAIRLGELQAHFNLPISPEEYAQENLKCGLVEVVYEWAKGTPFAEICELTDVPEGLIVRT 1208
TA R+ +LQ + I E + + + + ++EVVY WAKG+ F EI E+T V EG ++R+
Sbjct: 879 TARRVAQLQLECKVQIDVETFVK-SFRPDIMEVVYAWAKGSKFYEIMEITQVFEGSLIRS 937
Query: 1209 IVRLDETCREFKNAAAIMGNSALCRKMEIASNAIKRDIVFAASLYV 1254
I RL+E ++ AA +G L K E A + IKRDIVFAASLY+
Sbjct: 938 IRRLEEVLQQLIEAAKSIGEIELEAKFEEAVSKIKRDIVFAASLYL 983
>Medtr8g101340.1 | RNA helicase, ATP-dependent, SK12/DOB1 protein |
HC | chr8:42553280-42543791 | 20130731
Length = 984
Score = 414 bits (1064), Expect = e-115, Method: Compositional matrix adjust.
Identities = 237/585 (40%), Positives = 340/585 (58%), Gaps = 49/585 (8%)
Query: 263 MALDFPFELDAFQKEAIYYLEKGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPI 322
MA +PF LD FQ+ +I LE+ ESV V+AHTSAGKT +AEYA A++ + R +YT+P+
Sbjct: 76 MAKTYPFTLDPFQQVSIACLERNESVLVSAHTSAGKTAIAEYAIAMSFRDKQRVIYTSPL 135
Query: 323 KTISNQKYRDFCGKF-DVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIF 381
K +SNQKYR+ +F DVGL+TGDV+L P A+CL+MTTEILR MLYRG+++++++ WVIF
Sbjct: 136 KALSNQKYRELSQEFTDVGLMTGDVTLSPNATCLVMTTEILRGMLYRGSEVLKEVAWVIF 195
Query: 382 DEVHYVNDVERGVVWEEVIIMLPRHINIILLSATVPNTIEFADWIGRTKQKKIRLTGTTK 441
DE+HY+ D ERGVVWEE II LP I ++ LSAT+ N EFA+WI ++ + T
Sbjct: 196 DEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICNIHKQPCHVVYTDF 255
Query: 442 RPVPLEHCLF---YSGELYKICESETFLPQGLKAAKDASKRRHLTXXXXXXXXXXXXXHD 498
RP PL+H +F SG + E+E F +D ++ L
Sbjct: 256 RPTPLQHYVFPIGGSGLYLVVDENEQFREDNFLKVEDTFVKQKL---------------- 299
Query: 499 NARVQKGENTSRVKQHGTNFSRTGKGYQNNGNGQSNWRAEASMWLMFINKL-SKKSLLPV 557
GE GKG + NG A + I K+ ++ PV
Sbjct: 300 ------GE---------------GKGGKTNGRFGKGGSASGGSDIYKIVKMIMERKFQPV 338
Query: 558 IIFCFSKNRCDRSADSMTGTDLTSSSEKSEIRLFCDKAFSRLKGSDRNLPQVVRVQNLLR 617
IIF FS+ C++ A SM+ D S EK + A L DR+LP + + LL+
Sbjct: 339 IIFSFSRRECEQHAMSMSKLDFNSQEEKDTVEHVFQNAMLCLNEEDRSLPAIELMLPLLQ 398
Query: 618 RGIGVHHAGLLPIVKEVVEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDTLRKFGGKEF 677
RGI VHH+GLLP++KE+VE+LF G+VK LF+TETFAMG+N PA+TVVF ++K+ G
Sbjct: 399 RGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSH 458
Query: 678 RQLLPGEYTQMAGRAGRRGLDKIGTGILMCRDRDELPEERDLKDVTVGSATHLESQFRLT 737
R + GEY QM+GRAGRRG D+ G I+M DE E +LKD+ +G L S FRL+
Sbjct: 459 RYIGSGEYIQMSGRAGRRGKDERGICIIMI---DEQMEMNNLKDMVLGKPAPLVSTFRLS 515
Query: 738 YIMILHLL-RVE-ELKVEDMLKRSFAEFHAQKKLPEMQQILKLKLNQPTKAIECIKGEPT 795
Y IL+L+ R E + E +++ SF +F +K LP++ + + + L Q ++ GE
Sbjct: 516 YYSILNLMSRAEGQFTAEHVIRNSFHQFQYEKTLPDVGKRVSM-LEQEVALLDA-AGEAE 573
Query: 796 IEEYYNLYSEAEKYSNQISEAILQSPNVQPFLNTGRVVIVKSEST 840
+ EY+ L + + ++ I++ + FL GR++ V+ T
Sbjct: 574 VSEYHKLKLDLAQLEKKMMSQIIRPEMILYFLVPGRLIKVREGGT 618
Score = 172 bits (435), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/285 (33%), Positives = 171/285 (60%), Gaps = 5/285 (1%)
Query: 974 LLLDLKSDGNKYP---PALDPVKDLKLKDVELVTTYREWTKLLEKMSQNQCHGCIKLEEH 1030
+LL ++ GN++P P L+PVKD+ ++D E+V + +L +K+ + H I+ +
Sbjct: 701 ILLAVQELGNRFPQGLPKLNPVKDMDVRDSEIVELVNQIEELEKKLFDHPMHK-IQDVDQ 759
Query: 1031 LKLAKEIKTHKDEVYELQFQMSDGALKQM-PDFQGRIDVLKEIGCIDEDLVVQMKGRVAC 1089
+K + E+ +L+ +M D L++ + + R VLK++G ID D VVQ+KGR AC
Sbjct: 760 IKCFERKAEVNHEIQQLKAKMRDSQLQKFREELKNRSRVLKKLGHIDSDSVVQLKGRAAC 819
Query: 1090 EMNSGEELICTECLFENQLDDLEPEEAVALMSAFVFQQKNTSEPSLTPKLAEARHRLFKT 1149
+++G+EL+ TE +F +DL+ + AL S F+ +K++ + L +LA +L +
Sbjct: 820 LIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPIEKSSEQIQLRSELARPLQQLQDS 879
Query: 1150 AIRLGELQAHFNLPISPEEYAQENLKCGLVEVVYEWAKGTPFAEICELTDVPEGLIVRTI 1209
A R+ E++ L ++ EY + ++ L++V+Y W+KG+ FA++ ++TD+ EG I+R
Sbjct: 880 ARRIAEIEHECKLEVNVNEYVESTVRPFLMDVIYSWSKGSSFADVTQMTDIFEGSIIRAA 939
Query: 1210 VRLDETCREFKNAAAIMGNSALCRKMEIASNAIKRDIVFAASLYV 1254
RLDE + + AA +G + L +K AS +++R I+FA SLY+
Sbjct: 940 RRLDEFLNQLRAAADAVGEADLEKKFAAASESLRRGIIFANSLYL 984
>Medtr5g069360.1 | DEAD/DEAH-box RNA helicase | HC |
chr5:29403540-29411488 | 20130731
Length = 967
Score = 397 bits (1021), Expect = e-110, Method: Compositional matrix adjust.
Identities = 227/585 (38%), Positives = 341/585 (58%), Gaps = 65/585 (11%)
Query: 263 MALDFPFELDAFQKEAIYYLEKGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPI 322
MA FPF LD FQ+ +I LE+ ESV V+AHTSAGKT +AEYA A++ + + +YT+P+
Sbjct: 73 MAKTFPFTLDQFQQVSIACLERNESVLVSAHTSAGKTAIAEYAIAMSLRDKRKVLYTSPL 132
Query: 323 KTISNQKYRDFCGKF-DVGLLTGDVSLRP-EASCLIMTTEILRSMLYRGADIIRDIEWVI 380
K+++NQKY + +F DVGL+TGD+++ P EA CLIMTTEILR MLYRG++++ +++WVI
Sbjct: 133 KSLNNQKYSELRQEFTDVGLITGDITIYPSEAKCLIMTTEILRGMLYRGSEVLNEVDWVI 192
Query: 381 FDEVHYVNDVERGVVWEEVIIMLPRHINIILLSATVPNTIEFADWIGRTKQKKIRLTGTT 440
FDE+H + D ERGVVWEE II+LP + ++ LSAT+ N +EFA+WI +++ + T
Sbjct: 193 FDEIHCMKDGERGVVWEESIILLPPTVKMVFLSATLSNALEFAEWISTLRKQPCHVICTN 252
Query: 441 KRPVPLEHCLFYSG--ELYKIC-ESETFLPQGLKAAKDASKRRHLTXXXXXXXXXXXXXH 497
RP P++H +F G LY I E+E F+ A
Sbjct: 253 FRPTPIQHYVFPIGGRRLYPIVDENEEFMGDNFVMA------------------------ 288
Query: 498 DNARVQKGENTSRVKQHGTNFSRTGKGYQNNGNGQSNWRAEASMWLMFINKLSKKSLLPV 557
ENT F + G N G+ + + +K P+
Sbjct: 289 --------ENT---------FLKQKLGEGNKGD-----------MFKIVKMIMEKKFQPI 320
Query: 558 IIFCFSKNRCDRSADSMTGTDLTSSSEKSEIRLFCDKAFSRLKGSDRNLPQVVRVQNLLR 617
I+F FSK C+ + S++ D + EK + + A L DR+L + V L+
Sbjct: 321 IVFSFSKKECEHNLKSISKLDFNTQEEKERVLDIFEMAVLTLNEEDRSLCAIKEVLPHLQ 380
Query: 618 RGIGVHHAGLLPIVKEVVEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDTLRKFGGKEF 677
RGIG+HH+GLLP++KE+VE+LF G+VK LF+TETFAMG+N PA+TVVF +++K+ G E
Sbjct: 381 RGIGIHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFSSVKKWDGHEH 440
Query: 678 RQLLPGEYTQMAGRAGRRGLDKIGTGILMCRDRDELPEERDLKDVTVGSATHLESQFRLT 737
R + GEY QM+GRAGRRG D+ G I+M DE + +L+D+ +G L S FRL
Sbjct: 441 RYIRSGEYIQMSGRAGRRGKDEHGICIIMI---DEQMNKNNLEDIVLGKPAPLVSTFRLR 497
Query: 738 YIMILHLL-RVE-ELKVEDMLKRSFAEFHAQKKLPEMQQILKLKLNQPTKAIECIKGEPT 795
Y IL+L+ R + + E ++ SF +F +K LPEM++ + + L Q ++ + +
Sbjct: 498 YHSILNLMSRADGQFSAEHLISNSFHQFQYEKTLPEMKKRVSM-LEQKLALLDAAE-KAE 555
Query: 796 IEEYYNLYSEAEKYSNQISEAILQSPNVQPFLNTGRVVIVKSEST 840
+ EY+ L + + ++S+ I + N+ PFL GR++ V+ T
Sbjct: 556 VSEYHKLKLKLAELQRKMSKKI-RPDNILPFLCPGRLIKVRERGT 599
Score = 131 bits (329), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 81/289 (28%), Positives = 155/289 (53%), Gaps = 11/289 (3%)
Query: 974 LLLDLKSDGNKYP---PALDPVKDLKLKDVELVTTYREWTKLLEKMSQNQCHGCIKLEE- 1029
+LL ++ +++P P ++P +D LKD E+V +E L +K+ + H +E+
Sbjct: 682 ILLGVQEICDRFPQGLPTINPAQDNVLKDSEIVELVKEMENLEKKLLDHPMHKIQDVEKN 741
Query: 1030 ---HLKLAKEIKTHKDEVYELQFQMSDGALKQM-PDFQGRIDVLKEIGCIDEDLVVQMKG 1085
H + ++ E+ +L+ +M L++ + + R VLKE+G ID D VVQ+KG
Sbjct: 742 NITHFQRKADLN---HEIQQLKEKMQYSQLQKFREELKNRSQVLKELGHIDADSVVQLKG 798
Query: 1086 RVACEMNSGEELICTECLFENQLDDLEPEEAVALMSAFVFQQKNTSEPSLTPKLAEARHR 1145
+ AC ++ + L+ TE LF + L+ + AL S F+ K++ + T L +
Sbjct: 799 KAACLIDMDDVLLVTELLFNGTFNHLDHHQVTALASCFMPIDKSSKKIQPTSLLERPLQQ 858
Query: 1146 LFKTAIRLGELQAHFNLPISPEEYAQENLKCGLVEVVYEWAKGTPFAEICELTDVPEGLI 1205
L +A R+ E++ + L ++ +Y + + +++ ++ W+KG+ FA++ ++TD+ EG I
Sbjct: 859 LQDSARRIAEIECKYRLRVNVNKYVKSTERPVIMDAIHSWSKGSSFADVTQMTDIFEGSI 918
Query: 1206 VRTIVRLDETCREFKNAAAIMGNSALCRKMEIASNAIKRDIVFAASLYV 1254
+ RL + + A +G + L +K AS +I+R I+F SLY+
Sbjct: 919 ITAARRLVGFLNQLRAGAEAVGENDLAKKFTAASESIRRGIIFTDSLYL 967
>Medtr5g036660.1 | DEAD-box ATP-dependent RNA helicase ISE2 | HC |
chr5:16017947-16009934 | 20130731
Length = 1155
Score = 255 bits (651), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 176/505 (34%), Positives = 261/505 (51%), Gaps = 47/505 (9%)
Query: 260 VPDMALDFPFELDAFQKEAIYYLEKGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYT 319
V ++A + F +D FQ++AI +G SV V+A TS+GKT++AE A R YT
Sbjct: 135 VDELASVYDFRIDKFQRQAIQAFLRGSSVVVSAPTSSGKTLIAEAAAVATVARGRRLFYT 194
Query: 320 APIKTISNQKYRDF---CGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYR-------G 369
P+K +SNQK+R+F G +VGLLTGD ++ +A LIMTTEILR+MLY+ G
Sbjct: 195 TPLKALSNQKFREFRETFGDSNVGLLTGDSAVNKDAQVLIMTTEILRNMLYQSVGNVSSG 254
Query: 370 ADIIRDIEWVIFDEVHYVNDVERGVVWEEVIIMLPRHINIILLSATVPNTIEFADWIGRT 429
+ ++ +++ ++ DEVHY++D+ RG VWEE++I P+ + +I LSATV N E A WIG+
Sbjct: 255 SGLV-NVDVIVLDEVHYLSDISRGTVWEEIVIYCPKAVQLICLSATVANPDELAGWIGQI 313
Query: 430 KQKKIRLTGTTKRPVPLEHCLFYSGELYKICESETFLPQGLKAAKDASKRRHLTXXXXXX 489
L ++KRPVPL + + LP L K R L+
Sbjct: 314 -HGGTELVTSSKRPVPLN---------WHFSLKNSLLP--LLDDKGTQMNRKLSLNYLKL 361
Query: 490 XXXXXXXHDNARVQKGENTSRVKQHGTNFSRTGKGYQNNGNGQSNW----RAEASMWLMF 545
+ + +K SR + T++ + + +++ R++ +
Sbjct: 362 QAAEAKPYKDDWPRK--RNSRKRGTRTSYDIDDRMLEQRSLSKNDINAIRRSQVPQIIDT 419
Query: 546 INKLSKKSLLPVIIFCFSKNRCDRSADSMTGTDLTSSSEKSEIRLFCDKAFSRLKGSDRN 605
+ L + +LP + F FS+ CD + + L E SE+ L A R +
Sbjct: 420 LWHLQSRDMLPAVWFIFSRKGCDAAVQYVEDCKLLDECEASEVLL----ALKRFR---IQ 472
Query: 606 LPQVVR---VQNLLRRGIGVHHAGLLPIVKEVVEMLFCRGVVKVLFSTETFAMGVNAPAR 662
P VR V+ LL +G+ HHAG LP+ K +E LF RG+VKV+F+TET A G+N PAR
Sbjct: 473 YPDAVRETAVKGLL-QGVAAHHAGCLPLWKAFIEELFQRGLVKVVFATETLAAGINMPAR 531
Query: 663 TVVFDTLRKFGGKEFRQLLPGEYTQMAGRAGRRGLDKIGTGILMCRDRDELPEE--RDLK 720
T V +L K L E QMAGRAGRRG+D+ G +L+ + P E +
Sbjct: 532 TAVISSLSKRSDTGRTLLTSNELLQMAGRAGRRGIDESGHVVLV-----QTPNEGAEECC 586
Query: 721 DVTVGSATHLESQFRLTYIMILHLL 745
V L SQF +Y M+L+LL
Sbjct: 587 KVLFSGLEPLVSQFTASYGMVLNLL 611
>Medtr1g008600.1 | ATP-binding; ATP-dependent helicase; DNA helicase
| HC | chr1:991547-976147 | 20130731
Length = 2177
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 85/158 (53%), Gaps = 9/158 (5%)
Query: 557 VIIFCFSKNRCDRSADSMTGTDLTSSSEKSEIRL-FCD--KAFSRLKGSDRNLPQVVRVQ 613
V+IFC S+ C+ +A + + + + +E F D A + L+ L V+ +
Sbjct: 781 VLIFCSSRKGCESTARHVAKFLKSFTVDINENNCEFADITSAINSLRKCPAGLDPVL--E 838
Query: 614 NLLRRGIGVHHAGLLPIVKEVVEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDTLRKFG 673
G+ HHAGL +E+VE + +G+++VL +T T A GVN PAR V+F R
Sbjct: 839 ETFPAGVAFHHAGLTVEEREIVETCYRKGLLRVLTATSTLAAGVNLPARRVIFRQPRI-- 896
Query: 674 GKEFRQLLPGEYTQMAGRAGRRGLDKIGTGILMCRDRD 711
G +F + Y QMAGRAGR G+D G +L+C+ ++
Sbjct: 897 GCDF--IDGTRYMQMAGRAGRTGIDTKGESVLICKPQE 932
>Medtr4g011450.1 | U5 small nuclear ribonucleoprotein 200 kDa
helicase | HC | chr4:2793467-2800896 | 20130731
Length = 2099
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 81/153 (52%), Gaps = 4/153 (2%)
Query: 557 VIIFCFSKNRCDRSADSMTGTDLTSSSEKSEIRLFCDKAFSRLKGSDRNLPQVVRVQNLL 616
V+IF S+ ++A ++ T L + + ++ D A + S +L + +++LL
Sbjct: 720 VLIFVHSRKETAKTARAIRDTALANDTLGRFLK--EDSASREILHSHTDLVKSNDLKDLL 777
Query: 617 RRGIGVHHAGLLPIVKEVVEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDTLRKFGGKE 676
G +HHAG+ +++VE LF G V+VL ST T A GVN PA TV+ + + +
Sbjct: 778 PYGFAIHHAGMTRTDRQLVEDLFASGHVQVLVSTATLAWGVNLPAHTVIIKGTKIYNPER 837
Query: 677 --FRQLLPGEYTQMAGRAGRRGLDKIGTGILMC 707
+ +L P + QM GRAGR D G GI++
Sbjct: 838 GAWTELSPLDVMQMLGRAGRPQYDSCGMGIVVT 870
Score = 73.9 bits (180), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 87/185 (47%), Gaps = 25/185 (13%)
Query: 286 ESVFVAAHTSAGKTVVAEYAFAL----ASKHCTRAVYTAPIKTISNQKYRDFCGKFDVGL 341
++ VAA T +GKT+ AE+A S R VY API+ ++ ++YRD+ KF GL
Sbjct: 1342 DNALVAAPTGSGKTICAEFAILRNHKKGSDSVMRVVYVAPIEALAKERYRDWEKKFGGGL 1401
Query: 342 ------LTG----DVSLRPEASCLIMTTEILRSM--LYRGADIIRDIEWVIFDEVHYVND 389
LTG D+ L + +I T E ++ ++ ++ + I DE+H +
Sbjct: 1402 KFAVVELTGETTTDLKLLEKGQIIISTPEKWDALSRRWKQRKHVQQVSLFIIDELHLIGG 1461
Query: 390 VERGVVWEEVIIMLP-------RHINIILLSATVPNTIEFADWIGRTKQKKIRLTGTTKR 442
+RG V E ++ + I + LS +V N + DWIG T + R
Sbjct: 1462 -QRGSVLEVIVSRMKYIANQVENKIRFVALSTSVANAKDLGDWIGATSHGLFNFSPVV-R 1519
Query: 443 PVPLE 447
PVPLE
Sbjct: 1520 PVPLE 1524
>Medtr4g011450.2 | U5 small nuclear ribonucleoprotein 200 kDa
helicase | HC | chr4:2793467-2800740 | 20130731
Length = 2072
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 81/153 (52%), Gaps = 4/153 (2%)
Query: 557 VIIFCFSKNRCDRSADSMTGTDLTSSSEKSEIRLFCDKAFSRLKGSDRNLPQVVRVQNLL 616
V+IF S+ ++A ++ T L + + ++ D A + S +L + +++LL
Sbjct: 720 VLIFVHSRKETAKTARAIRDTALANDTLGRFLK--EDSASREILHSHTDLVKSNDLKDLL 777
Query: 617 RRGIGVHHAGLLPIVKEVVEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDTLRKFGGKE 676
G +HHAG+ +++VE LF G V+VL ST T A GVN PA TV+ + + +
Sbjct: 778 PYGFAIHHAGMTRTDRQLVEDLFASGHVQVLVSTATLAWGVNLPAHTVIIKGTKIYNPER 837
Query: 677 --FRQLLPGEYTQMAGRAGRRGLDKIGTGILMC 707
+ +L P + QM GRAGR D G GI++
Sbjct: 838 GAWTELSPLDVMQMLGRAGRPQYDSCGMGIVVT 870
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 21/148 (14%)
Query: 319 TAPIKTISNQKYRDFCGKFDVGL------LTG----DVSLRPEASCLIMTTEILRSM--L 366
+API+ ++ ++YRD+ KF GL LTG D+ L + +I T E ++
Sbjct: 1352 SAPIEALAKERYRDWEKKFGGGLKFAVVELTGETTTDLKLLEKGQIIISTPEKWDALSRR 1411
Query: 367 YRGADIIRDIEWVIFDEVHYVNDVERGVVWEEVIIMLP-------RHINIILLSATVPNT 419
++ ++ + I DE+H + +RG V E ++ + I + LS +V N
Sbjct: 1412 WKQRKHVQQVSLFIIDELHLIGG-QRGSVLEVIVSRMKYIANQVENKIRFVALSTSVANA 1470
Query: 420 IEFADWIGRTKQKKIRLTGTTKRPVPLE 447
+ DWIG T + RPVPLE
Sbjct: 1471 KDLGDWIGATSHGLFNFSPVV-RPVPLE 1497
>Medtr2g064740.1 | U5 small nuclear ribonucleoprotein 200 kDa
helicase | HC | chr2:29260637-29270804 | 20130731
Length = 2188
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Query: 557 VIIFCFSKNRCDRSADSMTGTDLTSSSEKSEIRLFCDKAFSRLKGSDRNLPQVVRVQNLL 616
V+IF S+ ++A ++ L + ++ D A + + +L + +++LL
Sbjct: 765 VLIFVHSRKETAKTARAIRDAALADDTLGRFLK--EDSASREILHTHTDLVKSSDLKDLL 822
Query: 617 RRGIGVHHAGLLPIVKEVVEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDTLRKFGGKE 676
G +HHAG+ +++VE LF G +VL ST T A GVN PA TV+ + + ++
Sbjct: 823 PYGFAIHHAGMTRTDRQLVEDLFADGHAQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEK 882
Query: 677 --FRQLLPGEYTQMAGRAGRRGLDKIGTGILMC 707
+ +L P + QM GRAGR D G GI++
Sbjct: 883 GAWTELSPLDVMQMLGRAGRPQYDSYGEGIILT 915
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 90/188 (47%), Gaps = 31/188 (16%)
Query: 286 ESVFVAAHTSAGKTVVAEYAFALASKH------CTRAVYTAPIKTISNQKYRDFCGKFDV 339
++V VAA T +GKT+ AE FA+ H R VY AP++ ++ ++YRD+ KF
Sbjct: 1387 DNVLVAAPTGSGKTICAE--FAILRNHQKLPDSVMRVVYIAPVEALAKERYRDWEKKFGG 1444
Query: 340 GL------LTG----DVSLRPEASCLIMTTEILRSM--LYRGADIIRDIEWVIFDEVHYV 387
GL LTG D+ L + +I T E ++ ++ ++ + I DE+H +
Sbjct: 1445 GLKLKVVELTGETATDLKLLEKGQVIISTPEKWDALSRRWKQRKHVQQVSLFIIDELHLI 1504
Query: 388 NDVERGVVWEEVIIMLPRHIN--------IILLSATVPNTIEFADWIGRTKQKKIRLTGT 439
V+ EVI+ R+I+ I+ LS ++ N + +WIG T
Sbjct: 1505 GGQGGPVL--EVIVSRMRYISSQLENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPG 1562
Query: 440 TKRPVPLE 447
RPVPLE
Sbjct: 1563 V-RPVPLE 1569
>Medtr4g008780.1 | U5 small nuclear ribonucleoprotein 200 kDa
helicase | HC | chr4:1682714-1679988 | 20130731
Length = 890
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 87/185 (47%), Gaps = 25/185 (13%)
Query: 286 ESVFVAAHTSAGKTVVAEYAFAL----ASKHCTRAVYTAPIKTISNQKYRDFCGKFDVGL 341
++ VAA T +GKT+ AE+A S R VY API+ ++ ++YRD+ KF GL
Sbjct: 104 DNALVAAPTGSGKTICAEFAILRNHQKGSDSVMRVVYVAPIEALAKERYRDWEKKFGGGL 163
Query: 342 ------LTG----DVSLRPEASCLIMTTEILRSM--LYRGADIIRDIEWVIFDEVHYVND 389
LTG D+ L + +I T E ++ ++ ++ + I DE+H +
Sbjct: 164 KLAVVELTGETTTDLKLLEKGQIIISTPEKWDALSRRWKQRKHVQQVSLFIIDELHLIGG 223
Query: 390 VERGVVWEEVIIMLP-------RHINIILLSATVPNTIEFADWIGRTKQKKIRLTGTTKR 442
+RG V E ++ + I + LS +V N + DWIG T + R
Sbjct: 224 -QRGSVLEVIVSRMKYIANQVENKIRFVALSTSVANAKDLGDWIGATSHGLFNFSPVV-R 281
Query: 443 PVPLE 447
PVPLE
Sbjct: 282 PVPLE 286
>Medtr2g030905.1 | U5 small nuclear ribonucleoprotein 200 kDa
helicase | LC | chr2:11697696-11700581 | 20130731
Length = 961
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 97/199 (48%), Gaps = 23/199 (11%)
Query: 270 ELDAFQKEAIYYLEKGE-SVFVAAHTSAGKTVVAEYAFAL-ASKHCTRAVYTAPIKTISN 327
+ + Q A L K + +VF+AA T +GKT AE A K R VY API+ I+
Sbjct: 153 QFNKIQTHAFQVLYKSDDNVFLAAPTGSGKTTCAEIAILRNHQKGHMRVVYIAPIRAIAQ 212
Query: 328 QKYRDFCGKFDVGL------LTG----DVSLRPEASCLIMTTEILRSM--LYRGADIIRD 375
+YR++ KF GL LTG D+ L E +I T +I ++ ++ I+
Sbjct: 213 NQYREWKTKFGGGLNSMIVELTGENETDLKLLEEGQIIITTPQIWDALSRQWKQIIQIQQ 272
Query: 376 IEWVIFDEVHYVNDVERGVVWEEVIIMLP-------RHINIILLSATVPNTIEFADWIGR 428
+ +I D++H++ E G + E +I+ + + + I+ LSA + N + +WIG
Sbjct: 273 VPLLILDDLHFIGGPE-GHILERIIVRMKQISTRVGKKMRIVALSAPITNGKDIGEWIGA 331
Query: 429 TKQKKIRLTGTTKRPVPLE 447
T + T R VPLE
Sbjct: 332 TSHSLFNFSPTA-RHVPLE 349
>Medtr3g025300.1 | U5 small nuclear ribonucleoprotein helicase | HC
| chr3:7719529-7688875 | 20130731
Length = 2081
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 71/134 (52%), Gaps = 12/134 (8%)
Query: 608 QVVRVQN-----LLRRGIGVHHAGLLPIVKEVVEMLFCRGVVKVLFSTETFAMGVNAPAR 662
+VV+ +N L G+G+HHAG+L + + E LF G++KVL T T A GVN PA
Sbjct: 722 EVVKSRNKDLVQLFELGMGIHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAH 781
Query: 663 TVVFDTLRKFGGKE--FRQLLPGEYTQMAGRAGRRGLDKIGTGILMCRDRDELPEERDLK 720
TVV + + K +R L + Q+ GRAGR DK G GI++ D+L L
Sbjct: 782 TVVIKGTQIYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIIT-SHDKLAYYLRL- 839
Query: 721 DVTVGSATHLESQF 734
+ S +ESQF
Sbjct: 840 ---LTSQLPIESQF 850
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 79/161 (49%), Gaps = 17/161 (10%)
Query: 556 PVIIFCFSKNRCDRSADSMTGTDLTSSSEKSEIRLFCDKAFSRL-----KGSDRNLPQVV 610
PV+IF S+ + +A + +S E S R F + L + SD+NL
Sbjct: 1516 PVLIFVSSRRQTRLTALDLI--QFAASDEHS--RQFLNMPEEALEMFLSQVSDQNL---- 1567
Query: 611 RVQNLLRRGIGVHHAGLLPIVKEVVEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDTLR 670
++ L+ GIG+HHAGL + +VE LF ++VL T T A GVN PA V+
Sbjct: 1568 --RHTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTE 1625
Query: 671 KFGGKEFRQL-LP-GEYTQMAGRAGRRGLDKIGTGILMCRD 709
+ GK R + P + QM GRAGR D+ G +++ +
Sbjct: 1626 YYDGKTKRYVDFPITDILQMMGRAGRPQFDQHGKAVILVHE 1666
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 85/190 (44%), Gaps = 29/190 (15%)
Query: 285 GESVFVAAHTSAGKTVVA----------EYAFALASKHCTRAVYTAPIKTISNQKYRDFC 334
E++ V A T AGKT +A + K + VY AP+K ++ + F
Sbjct: 453 NENILVCAPTGAGKTNIAMISILHEIGQHFKDGYLHKDKFKIVYVAPMKALAAEVTSTFS 512
Query: 335 GKFD-----VGLLTGDVSLRP----EASCLIMTTEILRSMLYRGADIIRD--IEWVIFDE 383
+ V LTGD+ L E ++ T E + + +D+ ++ +I DE
Sbjct: 513 QRLSPLNMSVRELTGDMQLSKNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDE 572
Query: 384 VHYVNDVERGVVWEEVIIMLPRH-------INIILLSATVPNTIEFADWIGRTKQKKIRL 436
VH +ND +RG V E ++ R I I+ LSAT+PN +E A ++ +
Sbjct: 573 VHLLND-DRGPVIEALVARTLRQVESSQSMIRIVGLSATLPNYLEVAQFLRVNPDTGLFF 631
Query: 437 TGTTKRPVPL 446
++ RPVPL
Sbjct: 632 FDSSYRPVPL 641
>Medtr3g025300.2 | U5 small nuclear ribonucleoprotein helicase | HC
| chr3:7719529-7695186 | 20130731
Length = 1734
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 60/107 (56%), Gaps = 7/107 (6%)
Query: 608 QVVRVQN-----LLRRGIGVHHAGLLPIVKEVVEMLFCRGVVKVLFSTETFAMGVNAPAR 662
+VV+ +N L G+G+HHAG+L + + E LF G++KVL T T A GVN PA
Sbjct: 722 EVVKSRNKDLVQLFELGMGIHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAH 781
Query: 663 TVVFDTLRKFGGKE--FRQLLPGEYTQMAGRAGRRGLDKIGTGILMC 707
TVV + + K +R L + Q+ GRAGR DK G GI++
Sbjct: 782 TVVIKGTQIYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIIT 828
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 79/161 (49%), Gaps = 17/161 (10%)
Query: 556 PVIIFCFSKNRCDRSADSMTGTDLTSSSEKSEIRLFCDKAFSRL-----KGSDRNLPQVV 610
PV+IF S+ + +A + +S E S R F + L + SD+NL
Sbjct: 1516 PVLIFVSSRRQTRLTALDLI--QFAASDEHS--RQFLNMPEEALEMFLSQVSDQNL---- 1567
Query: 611 RVQNLLRRGIGVHHAGLLPIVKEVVEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDTLR 670
++ L+ GIG+HHAGL + +VE LF ++VL T T A GVN PA V+
Sbjct: 1568 --RHTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTE 1625
Query: 671 KFGGKEFRQL-LP-GEYTQMAGRAGRRGLDKIGTGILMCRD 709
+ GK R + P + QM GRAGR D+ G +++ +
Sbjct: 1626 YYDGKTKRYVDFPITDILQMMGRAGRPQFDQHGKAVILVHE 1666
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 29/189 (15%)
Query: 286 ESVFVAAHTSAGKTVVA----------EYAFALASKHCTRAVYTAPIKTISNQKYRDFCG 335
E++ V A T AGKT +A + K + VY AP+K ++ + F
Sbjct: 454 ENILVCAPTGAGKTNIAMISILHEIGQHFKDGYLHKDKFKIVYVAPMKALAAEVTSTFSQ 513
Query: 336 KFD-----VGLLTGDVSLRP----EASCLIMTTEILRSMLYRGADIIRD--IEWVIFDEV 384
+ V LTGD+ L E ++ T E + + +D+ ++ +I DEV
Sbjct: 514 RLSPLNMSVRELTGDMQLSKNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEV 573
Query: 385 HYVNDVERGVVWEEVIIMLPRH-------INIILLSATVPNTIEFADWIGRTKQKKIRLT 437
H +ND +RG V E ++ R I I+ LSAT+PN +E A ++ +
Sbjct: 574 HLLND-DRGPVIEALVARTLRQVESSQSMIRIVGLSATLPNYLEVAQFLRVNPDTGLFFF 632
Query: 438 GTTKRPVPL 446
++ RPVPL
Sbjct: 633 DSSYRPVPL 641
>Medtr7g075463.1 | ATP-binding; ATP-dependent helicase; DNA helicase
| HC | chr7:28265418-28275446 | 20130731
Length = 1252
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 10/150 (6%)
Query: 611 RVQNLLRRGIGVHHAGLLPIVKEVVEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDTLR 670
++Q+ + G+G H+ GL + +VE LF +G ++VL +T T A G+N PA TVV + +
Sbjct: 328 QMQSYILYGVGYHNGGLCHKDRSIVEGLFLKGDIQVLCTTNTLAHGINLPAHTVVIKSTQ 387
Query: 671 KFGGKE--FRQLLPGEYTQMAGRAGRRGLDKIGTGILMCRDRDELPEERDLKDVTVGSAT 728
F ++ + + QM+GRAGR D G I+M R E L + +
Sbjct: 388 HFNKEKSLYMEYDRSTILQMSGRAGRPPFDDTGMVIIMTRR-----ETVHLYENLLSGCE 442
Query: 729 HLESQFRLTYIMILHLL-RVEELKVEDMLK 757
+ESQ L + HLL + +L V D+ K
Sbjct: 443 VVESQ--LLSCVTEHLLAEIVQLTVSDITK 470
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 89/206 (43%), Gaps = 43/206 (20%)
Query: 287 SVFVAAHTSAGKTVVAEYAFA-------------LASKHCTRAVYTAPIKTISNQKYRDF 333
++ ++A T +GKTV+ E + K + +Y AP K + +K RD+
Sbjct: 42 NMVISAPTGSGKTVLFELCILRLLSRSISSEGRFIHVKGSLKTIYIAPSKALVQEKVRDW 101
Query: 334 CGKFDV-GL----LTGDV-SLRP----EASCLIMTTEILRSMLYRGAD-----IIRDIEW 378
KF G+ LTGD S P EA ++ T E ++ G + DI
Sbjct: 102 NQKFGPWGICCLELTGDNESYTPRNINEADIILTTPEKFDAVSRYGIESGGLSFFSDIAL 161
Query: 379 VIFDEVHYVNDVERGVVWEEVIIML------PR-------HINIILLSATVPNTIEFADW 425
++ DEVH +ND RG E ++ + P+ + + LSAT+PN + A W
Sbjct: 162 LLIDEVHLLND-PRGAALEAIVSRIKIISCNPKMKLNPLAQVRFLALSATIPNIEDLAKW 220
Query: 426 IGRTKQKKIRLTGTTKRPVPLEHCLF 451
+ Q I+ G RPV L +F
Sbjct: 221 LLVPDQ-GIKRFGEEMRPVKLTTKVF 245
>Medtr7g075463.3 | ATP-binding; ATP-dependent helicase; DNA helicase
| HC | chr7:28265418-28275446 | 20130731
Length = 1050
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 10/150 (6%)
Query: 611 RVQNLLRRGIGVHHAGLLPIVKEVVEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDTLR 670
++Q+ + G+G H+ GL + +VE LF +G ++VL +T T A G+N PA TVV + +
Sbjct: 328 QMQSYILYGVGYHNGGLCHKDRSIVEGLFLKGDIQVLCTTNTLAHGINLPAHTVVIKSTQ 387
Query: 671 KFGGKE--FRQLLPGEYTQMAGRAGRRGLDKIGTGILMCRDRDELPEERDLKDVTVGSAT 728
F ++ + + QM+GRAGR D G I+M R E L + +
Sbjct: 388 HFNKEKSLYMEYDRSTILQMSGRAGRPPFDDTGMVIIMTRR-----ETVHLYENLLSGCE 442
Query: 729 HLESQFRLTYIMILHLL-RVEELKVEDMLK 757
+ESQ L + HLL + +L V D+ K
Sbjct: 443 VVESQ--LLSCVTEHLLAEIVQLTVSDITK 470
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 89/206 (43%), Gaps = 43/206 (20%)
Query: 287 SVFVAAHTSAGKTVVAEYAFA-------------LASKHCTRAVYTAPIKTISNQKYRDF 333
++ ++A T +GKTV+ E + K + +Y AP K + +K RD+
Sbjct: 42 NMVISAPTGSGKTVLFELCILRLLSRSISSEGRFIHVKGSLKTIYIAPSKALVQEKVRDW 101
Query: 334 CGKFDV-GL----LTGDV-SLRP----EASCLIMTTEILRSMLYRGAD-----IIRDIEW 378
KF G+ LTGD S P EA ++ T E ++ G + DI
Sbjct: 102 NQKFGPWGICCLELTGDNESYTPRNINEADIILTTPEKFDAVSRYGIESGGLSFFSDIAL 161
Query: 379 VIFDEVHYVNDVERGVVWEEVIIML------PR-------HINIILLSATVPNTIEFADW 425
++ DEVH +ND RG E ++ + P+ + + LSAT+PN + A W
Sbjct: 162 LLIDEVHLLND-PRGAALEAIVSRIKIISCNPKMKLNPLAQVRFLALSATIPNIEDLAKW 220
Query: 426 IGRTKQKKIRLTGTTKRPVPLEHCLF 451
+ Q I+ G RPV L +F
Sbjct: 221 LLVPDQ-GIKRFGEEMRPVKLTTKVF 245
>Medtr7g075463.2 | ATP-binding; ATP-dependent helicase; DNA helicase
| HC | chr7:28265418-28275446 | 20130731
Length = 940
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 10/150 (6%)
Query: 611 RVQNLLRRGIGVHHAGLLPIVKEVVEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDTLR 670
++Q+ + G+G H+ GL + +VE LF +G ++VL +T T A G+N PA TVV + +
Sbjct: 328 QMQSYILYGVGYHNGGLCHKDRSIVEGLFLKGDIQVLCTTNTLAHGINLPAHTVVIKSTQ 387
Query: 671 KFGGKE--FRQLLPGEYTQMAGRAGRRGLDKIGTGILMCRDRDELPEERDLKDVTVGSAT 728
F ++ + + QM+GRAGR D G I+M R E L + +
Sbjct: 388 HFNKEKSLYMEYDRSTILQMSGRAGRPPFDDTGMVIIMTRR-----ETVHLYENLLSGCE 442
Query: 729 HLESQFRLTYIMILHLL-RVEELKVEDMLK 757
+ESQ L + HLL + +L V D+ K
Sbjct: 443 VVESQ--LLSCVTEHLLAEIVQLTVSDITK 470
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 89/206 (43%), Gaps = 43/206 (20%)
Query: 287 SVFVAAHTSAGKTVVAEYAFA-------------LASKHCTRAVYTAPIKTISNQKYRDF 333
++ ++A T +GKTV+ E + K + +Y AP K + +K RD+
Sbjct: 42 NMVISAPTGSGKTVLFELCILRLLSRSISSEGRFIHVKGSLKTIYIAPSKALVQEKVRDW 101
Query: 334 CGKFDV-GL----LTGDV-SLRP----EASCLIMTTEILRSMLYRGAD-----IIRDIEW 378
KF G+ LTGD S P EA ++ T E ++ G + DI
Sbjct: 102 NQKFGPWGICCLELTGDNESYTPRNINEADIILTTPEKFDAVSRYGIESGGLSFFSDIAL 161
Query: 379 VIFDEVHYVNDVERGVVWEEVIIML------PR-------HINIILLSATVPNTIEFADW 425
++ DEVH +ND RG E ++ + P+ + + LSAT+PN + A W
Sbjct: 162 LLIDEVHLLND-PRGAALEAIVSRIKIISCNPKMKLNPLAQVRFLALSATIPNIEDLAKW 220
Query: 426 IGRTKQKKIRLTGTTKRPVPLEHCLF 451
+ Q I+ G RPV L +F
Sbjct: 221 LLVPDQ-GIKRFGEEMRPVKLTTKVF 245
>Medtr7g075463.4 | ATP-binding; ATP-dependent helicase; DNA helicase
| HC | chr7:28265418-28275446 | 20130731
Length = 940
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 10/150 (6%)
Query: 611 RVQNLLRRGIGVHHAGLLPIVKEVVEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDTLR 670
++Q+ + G+G H+ GL + +VE LF +G ++VL +T T A G+N PA TVV + +
Sbjct: 328 QMQSYILYGVGYHNGGLCHKDRSIVEGLFLKGDIQVLCTTNTLAHGINLPAHTVVIKSTQ 387
Query: 671 KFGGKE--FRQLLPGEYTQMAGRAGRRGLDKIGTGILMCRDRDELPEERDLKDVTVGSAT 728
F ++ + + QM+GRAGR D G I+M R E L + +
Sbjct: 388 HFNKEKSLYMEYDRSTILQMSGRAGRPPFDDTGMVIIMTRR-----ETVHLYENLLSGCE 442
Query: 729 HLESQFRLTYIMILHLL-RVEELKVEDMLK 757
+ESQ L + HLL + +L V D+ K
Sbjct: 443 VVESQ--LLSCVTEHLLAEIVQLTVSDITK 470
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 89/206 (43%), Gaps = 43/206 (20%)
Query: 287 SVFVAAHTSAGKTVVAEYAFA-------------LASKHCTRAVYTAPIKTISNQKYRDF 333
++ ++A T +GKTV+ E + K + +Y AP K + +K RD+
Sbjct: 42 NMVISAPTGSGKTVLFELCILRLLSRSISSEGRFIHVKGSLKTIYIAPSKALVQEKVRDW 101
Query: 334 CGKFDV-GL----LTGDV-SLRP----EASCLIMTTEILRSMLYRGAD-----IIRDIEW 378
KF G+ LTGD S P EA ++ T E ++ G + DI
Sbjct: 102 NQKFGPWGICCLELTGDNESYTPRNINEADIILTTPEKFDAVSRYGIESGGLSFFSDIAL 161
Query: 379 VIFDEVHYVNDVERGVVWEEVIIML------PR-------HINIILLSATVPNTIEFADW 425
++ DEVH +ND RG E ++ + P+ + + LSAT+PN + A W
Sbjct: 162 LLIDEVHLLND-PRGAALEAIVSRIKIISCNPKMKLNPLAQVRFLALSATIPNIEDLAKW 220
Query: 426 IGRTKQKKIRLTGTTKRPVPLEHCLF 451
+ Q I+ G RPV L +F
Sbjct: 221 LLVPDQ-GIKRFGEEMRPVKLTTKVF 245
>Medtr4g008770.1 | U5 small nuclear ribonucleoprotein 200 kDa
helicase, putative | LC | chr4:1676751-1672827 |
20130731
Length = 666
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 24/164 (14%)
Query: 286 ESVFVAAHTSAGKTVVAEYAFAL----ASKHCTRAVYTAPIKTISNQKYRDFCGKFDVGL 341
++ VAA T +GKT+ AE+A S R VY API+ ++ ++YRD+ KF GL
Sbjct: 476 DNALVAAPTGSGKTICAEFAILRNHKKGSDSVMRVVYEAPIEALAKERYRDWEKKFGGGL 535
Query: 342 ------LTG----DVSLRPEASCLIMTTEILRSM--LYRGADIIRDIEWVIFDEVHYVND 389
LTG D+ L + +I T E ++ ++ ++ + I DE+H +
Sbjct: 536 KLAVVELTGETTTDLKLLEKGQIIISTPEKWDALSRRWKQRKHVQQVSLFIIDELHLIGG 595
Query: 390 VERGVVWEEVIIMLP-------RHINIILLSATVPNTIEFADWI 426
+RG V E ++ + I + LS +V N + DWI
Sbjct: 596 -QRGTVLEVIVSRMKYIANQVENKIRFVALSTSVANAKDLGDWI 638
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 24/164 (14%)
Query: 286 ESVFVAAHTSAGKTVVAEYAFAL----ASKHCTRAVYTAPIKTISNQKYRDFCGKFDVGL 341
++ VAA T +GKT+ AE+A S R VY API+ ++ ++YRD+ KF GL
Sbjct: 164 DNALVAAPTGSGKTICAEFAILRNHKKGSDSVMRVVYEAPIEALAKERYRDWEKKFGGGL 223
Query: 342 ------LTG----DVSLRPEASCLIMTTEILRSM--LYRGADIIRDIEWVIFDEVHYVND 389
LTG D+ L + +I T E ++ ++ ++ + I DE+H +
Sbjct: 224 KLAVVELTGETTTDLKLLEKGQIIISTPEKWDALSRRWKQRKHVQQVSLFIIDELHLIGG 283
Query: 390 VERGVVWEEVIIMLP-------RHINIILLSATVPNTIEFADWI 426
+RG V E ++ + I + LS +V N + DWI
Sbjct: 284 -QRGPVLEVIVSRMKYIANQVENKIRFVALSTSVANAKDLGDWI 326
>Medtr1g007510.1 | DNA polymerase theta-like protein | HC |
chr1:413021-417854 | 20130731
Length = 912
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 69/138 (50%), Gaps = 9/138 (6%)
Query: 557 VIIFCFSKNRCDRSADSMTGTDLTSSSEKSEIRL-FCD--KAFSRLKGSDRNLPQVVRVQ 613
V+IFC S+ C+ + + + + + +E F D A + L+ L V+ +
Sbjct: 35 VLIFCSSRKGCESTGRHVAKFLKSFTVDINENNCEFADITSAINSLRKCPAGLDPVL--E 92
Query: 614 NLLRRGIGVHHAGLLPIVKEVVEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDTLRKFG 673
G+ HHAGL +E+VE + + +++VL +T T A GVN PAR V+F R
Sbjct: 93 ETFPAGVAFHHAGLTVEEREIVETCYRKDLLRVLTATSTLAAGVNPPARRVIFRQPRI-- 150
Query: 674 GKEFRQLLPGEYTQMAGR 691
G +F + Y QMAGR
Sbjct: 151 GCDF--IDGTRYMQMAGR 166