Miyakogusa Predicted Gene

Lj6g3v0609710.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0609710.1 tr|B9GIU6|B9GIU6_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_172390
PE=3,96.91,0,ThiC,Thiamine biosynthesis protein ThiC; THIAMINE
BIOSYNTHESIS PROTEIN THIC,NULL; thiC: thiamine
bio,NODE_6139_length_1701_cov_784.365662.path1.1
         (453 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g462970.1 | thiamine biosynthesis protein ThiC | HC | chr3...   919   0.0  
Medtr3g462950.1 | thiamine biosynthesis protein ThiC | HC | chr3...   917   0.0  

>Medtr3g462970.1 | thiamine biosynthesis protein ThiC | HC |
           chr3:25204497-25207488 | 20130731
          Length = 648

 Score =  919 bits (2376), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/453 (96%), Positives = 443/453 (97%)

Query: 1   MYFAKQGIITEEMLYCAAREKLDPEFVRSEVARGRAIIPSNKKHLELEPMIVGRNFLVKV 60
           MY+AKQGIITEEMLYCA REKLDPEFVRSEVARGRAIIPSNKKHLELEP IVGRNFLVKV
Sbjct: 170 MYYAKQGIITEEMLYCATREKLDPEFVRSEVARGRAIIPSNKKHLELEPTIVGRNFLVKV 229

Query: 61  NANIGNSAVASSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPI 120
           NANIGNSAV SSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPI
Sbjct: 230 NANIGNSAVVSSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPI 289

Query: 121 YQALEKVNGIAEDLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGG 180
           YQALEKVNGIAEDL+WE+FRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGG
Sbjct: 290 YQALEKVNGIAEDLTWEIFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGG 349

Query: 181 SIHAKWCLAYHKENFAYEHWDDILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQ 240
           SIHAKWCLAYHKENFAYEHWDDILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQ
Sbjct: 350 SIHAKWCLAYHKENFAYEHWDDILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQ 409

Query: 241 GELTRRAWEKDVQVMNEGPGHVPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHI 300
           GELTRRAWEKDVQVMNEGPGHVPMHKIPENM+KQLEWCNEAPFYTLGPLTTDIAPGYDHI
Sbjct: 410 GELTRRAWEKDVQVMNEGPGHVPMHKIPENMKKQLEWCNEAPFYTLGPLTTDIAPGYDHI 469

Query: 301 TSAIGAANIGALGTALLCYVTPKEHLGLPNRDDVKTGVIAYKIAAHAADLAKGHPHAQEW 360
           TSAIGAANIGALGTALLCYVTPKEHLGLPNRDDVK GVIAYKIAAHAADLAK HPHAQ W
Sbjct: 470 TSAIGAANIGALGTALLCYVTPKEHLGLPNRDDVKDGVIAYKIAAHAADLAKQHPHAQAW 529

Query: 361 DDALSKARFEFRWMDQFALSLDPMTAMSFHDESLPSEGAKVAHFCSMCGPKFCSMKITED 420
           DDALSKARFEFRWMDQFALSLDPMTAMSFHDE+LPSEGAKVAHFCSMCGPKFCSMKITED
Sbjct: 530 DDALSKARFEFRWMDQFALSLDPMTAMSFHDETLPSEGAKVAHFCSMCGPKFCSMKITED 589

Query: 421 VRKYAEKHGYGTAEEALLRGMDAMSAEFQSAKK 453
           VRKYAEKHGYG  EEAL +GM+AMSAEF +AKK
Sbjct: 590 VRKYAEKHGYGDVEEALKQGMNAMSAEFLAAKK 622


>Medtr3g462950.1 | thiamine biosynthesis protein ThiC | HC |
           chr3:25191816-25197236 | 20130731
          Length = 651

 Score =  917 bits (2370), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/454 (96%), Positives = 444/454 (97%), Gaps = 1/454 (0%)

Query: 1   MYFAKQGIITEEMLYCAAREKLDPEFVRSEVARGRAIIPSNKKHLELEPMIVGRNFLVKV 60
           MY+AKQGIITEEMLYCA REKL+PEFVRSEVARGRAIIPSNKKHLELEP IVGRNFLVKV
Sbjct: 170 MYYAKQGIITEEMLYCATREKLNPEFVRSEVARGRAIIPSNKKHLELEPTIVGRNFLVKV 229

Query: 61  NANIGNSAVASSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPI 120
           NANIGNSAV SSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPI
Sbjct: 230 NANIGNSAVVSSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPI 289

Query: 121 YQALEKVNGIAEDLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGG 180
           YQALEKVNGIAEDL+WEVFR+TLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGG
Sbjct: 290 YQALEKVNGIAEDLTWEVFRETLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGG 349

Query: 181 SIHAKWCLAYHKENFAYEHWDDILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQ 240
           SIHAKWCLAYHKENFAYEHWDDILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQ
Sbjct: 350 SIHAKWCLAYHKENFAYEHWDDILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQ 409

Query: 241 GELTRRAWEKDVQVMNEGPGHVPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHI 300
           GELTRRAWEKDVQVMNEGPGHVPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHI
Sbjct: 410 GELTRRAWEKDVQVMNEGPGHVPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHI 469

Query: 301 TSAIGAANIGALGTALLCYVTPKEHLGLPNRDDVKTGVIAYKIAAHAADLAKGHPHAQEW 360
           TSAIGAANIGALGTALLCYVTPKEHLGLPNRDDVK GVIAYKIAAHAADLAK HPHAQEW
Sbjct: 470 TSAIGAANIGALGTALLCYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKQHPHAQEW 529

Query: 361 DDALSKARFEFRWMDQFALSLDPMTAMSFHDESLPSEGAKVAHFCSMCGPKFCSMKITED 420
           DDALSKARFEFRWMDQFALSLDPMTAMSFHDE+LPSEGAKVAHFCSMCGPKFCSMKITED
Sbjct: 530 DDALSKARFEFRWMDQFALSLDPMTAMSFHDETLPSEGAKVAHFCSMCGPKFCSMKITED 589

Query: 421 VRKYAEKHGYGT-AEEALLRGMDAMSAEFQSAKK 453
           VRKYAEKHGYG   EEAL +GM+AMSAEF +AKK
Sbjct: 590 VRKYAEKHGYGEDVEEALKQGMNAMSAEFLAAKK 623