Miyakogusa Predicted Gene

Lj6g3v0609650.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0609650.1 tr|B9HP64|B9HP64_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_650159 PE=4
SV=1,67.95,2e-19,TSP9,Thylakoid soluble phosphoprotein TSP9; seg,NULL;
TSP9-like,NULL,gene.g64534.t1.1
         (91 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g462990.1 | thylakoid soluble phosphoprotein TSP9 protein ...    84   2e-17
Medtr5g069990.1 | thylakoid soluble phosphoprotein TSP9 protein ...    66   8e-12

>Medtr3g462990.1 | thylakoid soluble phosphoprotein TSP9 protein |
          HC | chr3:25212337-25211742 | 20130731
          Length = 95

 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/95 (52%), Positives = 51/95 (53%), Gaps = 5/95 (5%)

Query: 1  MASLMMSFXXXXXXXXXXXXX----XXXXXXKEEKSILDWILGGMQKEDQLLETDPILKK 56
          M SL MSF                       KEEK  LDWILGGMQKEDQ  ETDPILKK
Sbjct: 1  MTSLFMSFTPTTTRTRVFAPTATKGTTSAPIKEEKGFLDWILGGMQKEDQFFETDPILKK 60

Query: 57 VEEKSGGTTSGRGKNTVAM-PQXXXXXXXXXLFAK 90
          VEEKS GTTS   KNTV + PQ         LFAK
Sbjct: 61 VEEKSAGTTSNGRKNTVVVPPQKKKGGGFGGLFAK 95


>Medtr5g069990.1 | thylakoid soluble phosphoprotein TSP9 protein |
          HC | chr5:29662466-29661564 | 20130731
          Length = 106

 Score = 65.9 bits (159), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 36/62 (58%), Positives = 42/62 (67%), Gaps = 12/62 (19%)

Query: 28 KEEKSILDWILGGMQKEDQLLETDPILKKVEEK-------SGGTTSGR-----GKNTVAM 75
          K+EK   DWI+GG+ KEDQ  ETDPILKKVEEK       S GTTSG+     GKN+V +
Sbjct: 32 KQEKGFWDWIVGGLTKEDQFYETDPILKKVEEKNNSRGTTSRGTTSGKGTTSGGKNSVVV 91

Query: 76 PQ 77
          PQ
Sbjct: 92 PQ 93