Miyakogusa Predicted Gene

Lj6g3v0574840.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0574840.1 Non Characterized Hit- tr|K4BY95|K4BY95_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,48.84,0.000000000000002,SUBFAMILY NOT NAMED,NULL; COILIN
P80,Coilin; seg,NULL,CUFF.58298.1
         (403 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g086550.1 | hypothetical protein | LC | chr3:39228875-3922...   284   1e-76
Medtr3g086550.2 | hypothetical protein | LC | chr3:39228875-3922...   213   3e-55

>Medtr3g086550.1 | hypothetical protein | LC |
           chr3:39228875-39222626 | 20130731
          Length = 782

 Score =  284 bits (726), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 157/268 (58%), Positives = 179/268 (66%), Gaps = 25/268 (9%)

Query: 157 TFCWNGITSKKKGQKWGKERISSWKQDDHENSSQEWRAAQKAEREHLSNPVDFEKLTPYT 216
           T  WNG  SK   QKWGKE+ S+ KQDD E SSQ+    Q A ++   + VDFEKLTPYT
Sbjct: 513 TVQWNGTISK--DQKWGKEKTSAHKQDDCEQSSQDRPTDQNAGKKRTFDAVDFEKLTPYT 570

Query: 217 SLPKEGDVIAYRLIELSSSWTPELSSFRVGKISQYDAKSNRICLEPVSEFPFVLEEKTDQ 276
            LPKEG+VIAYRLIELS SWTPELSSFRVGK +QYD+KSNRI L+PVSEFPF   +K D 
Sbjct: 571 DLPKEGNVIAYRLIELSESWTPELSSFRVGKTTQYDSKSNRIWLQPVSEFPFDFWKKIDD 630

Query: 277 ETSSGQP---DPPLYQEDGSLEVEYTSLADVRMVKHXXXXXXXXXXXXXXLVNPPKATNG 333
               G P   DP  YQEDGSLE++Y SLADVR++KH               V P KATN 
Sbjct: 631 MDEDGSPSQSDPSPYQEDGSLEIDYASLADVRIIKHGHSDLATVVAHSDAFVTPTKATNN 690

Query: 334 STDEKP-------------------AKENGGVSVWDEINEALNAKKAKLSQENGWTKE-E 373
           STDEKP                   AKENG V+VWDEINEAL AKK +LSQE+ W KE +
Sbjct: 691 STDEKPADNETAAGSSKPQIEGHVTAKENGEVNVWDEINEALKAKKTRLSQEDRWKKEGD 750

Query: 374 TTGTRSWSYRAMRGSALGPTMARLRSQN 401
           ++  RSWS RA+R SALGPTMA LRSQN
Sbjct: 751 SSENRSWSQRALRCSALGPTMALLRSQN 778



 Score =  178 bits (452), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 108/215 (50%), Positives = 131/215 (60%), Gaps = 21/215 (9%)

Query: 3   TTDNLALITEVHKDESGRFKGHIHQQSSVAEKD-NKSS------NDQSEPTNDKTRFLQP 55
           TT+NLA I E H++E+G  K   H+++S+A+KD  KSS      ND+S  T+++TR LQP
Sbjct: 194 TTENLADIPEAHEEENGSVKDCTHRKASLAKKDIGKSSTLSCQKNDKSGSTSEETRSLQP 253

Query: 56  QDESETKKVPXXXXXXXXXXXX-------------XXXXXXXXXXXXNTSPVLEKD-EQL 101
           QDE E KK+P                                     + S VLEKD +Q+
Sbjct: 254 QDEGEPKKLPSRSARRKKAKRKWLRELKLKEKEKEKEKENENEKDKLHPSQVLEKDDQQI 313

Query: 102 PIKDNNCKVSDVNQQXXXXXXXXDDVIPVEIRPGHIRFQPLRKDQEVPQNQFPVETFCWN 161
           PIKDNN KVSDV QQ        DD++PVEIRPGHIRFQP  KD   P+NQ PV+TF WN
Sbjct: 314 PIKDNNGKVSDVRQQSNEESEADDDMVPVEIRPGHIRFQPRGKDLAAPENQLPVDTFQWN 373

Query: 162 GITSKKKGQKWGKERISSWKQDDHENSSQEWRAAQ 196
           G TSKKKGQKWGKER SS KQDD+E SSQ+  AAQ
Sbjct: 374 GTTSKKKGQKWGKERTSSHKQDDYEPSSQDGHAAQ 408


>Medtr3g086550.2 | hypothetical protein | LC |
           chr3:39228875-39222778 | 20130731
          Length = 764

 Score =  213 bits (542), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 113/187 (60%), Positives = 128/187 (68%), Gaps = 5/187 (2%)

Query: 157 TFCWNGITSKKKGQKWGKERISSWKQDDHENSSQEWRAAQKAEREHLSNPVDFEKLTPYT 216
           T  WNG  SK   QKWGKE+ S+ KQDD E SSQ+    Q A ++   + VDFEKLTPYT
Sbjct: 513 TVQWNGTISK--DQKWGKEKTSAHKQDDCEQSSQDRPTDQNAGKKRTFDAVDFEKLTPYT 570

Query: 217 SLPKEGDVIAYRLIELSSSWTPELSSFRVGKISQYDAKSNRICLEPVSEFPFVLEEKTDQ 276
            LPKEG+VIAYRLIELS SWTPELSSFRVGK +QYD+KSNRI L+PVSEFPF   +K D 
Sbjct: 571 DLPKEGNVIAYRLIELSESWTPELSSFRVGKTTQYDSKSNRIWLQPVSEFPFDFWKKIDD 630

Query: 277 ETSSGQP---DPPLYQEDGSLEVEYTSLADVRMVKHXXXXXXXXXXXXXXLVNPPKATNG 333
               G P   DP  YQEDGSLE++Y SLADVR++KH               V P KATN 
Sbjct: 631 MDEDGSPSQSDPSPYQEDGSLEIDYASLADVRIIKHGHSDLATVVAHSDAFVTPTKATNN 690

Query: 334 STDEKPA 340
           STDEKPA
Sbjct: 691 STDEKPA 697



 Score =  178 bits (452), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 108/215 (50%), Positives = 131/215 (60%), Gaps = 21/215 (9%)

Query: 3   TTDNLALITEVHKDESGRFKGHIHQQSSVAEKD-NKSS------NDQSEPTNDKTRFLQP 55
           TT+NLA I E H++E+G  K   H+++S+A+KD  KSS      ND+S  T+++TR LQP
Sbjct: 194 TTENLADIPEAHEEENGSVKDCTHRKASLAKKDIGKSSTLSCQKNDKSGSTSEETRSLQP 253

Query: 56  QDESETKKVPXXXXXXXXXXXX-------------XXXXXXXXXXXXNTSPVLEKD-EQL 101
           QDE E KK+P                                     + S VLEKD +Q+
Sbjct: 254 QDEGEPKKLPSRSARRKKAKRKWLRELKLKEKEKEKEKENENEKDKLHPSQVLEKDDQQI 313

Query: 102 PIKDNNCKVSDVNQQXXXXXXXXDDVIPVEIRPGHIRFQPLRKDQEVPQNQFPVETFCWN 161
           PIKDNN KVSDV QQ        DD++PVEIRPGHIRFQP  KD   P+NQ PV+TF WN
Sbjct: 314 PIKDNNGKVSDVRQQSNEESEADDDMVPVEIRPGHIRFQPRGKDLAAPENQLPVDTFQWN 373

Query: 162 GITSKKKGQKWGKERISSWKQDDHENSSQEWRAAQ 196
           G TSKKKGQKWGKER SS KQDD+E SSQ+  AAQ
Sbjct: 374 GTTSKKKGQKWGKERTSSHKQDDYEPSSQDGHAAQ 408