Miyakogusa Predicted Gene

Lj6g3v0551680.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0551680.1 Non Characterized Hit- tr|C0PMW8|C0PMW8_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,36.87,2e-18,coiled-coil,NULL; seg,NULL,CUFF.58024.1
         (342 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g086890.1 | hypothetical protein | HC | chr3:39393525-3939...   325   4e-89

>Medtr3g086890.1 | hypothetical protein | HC |
           chr3:39393525-39396093 | 20130731
          Length = 569

 Score =  325 bits (832), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 197/361 (54%), Positives = 228/361 (63%), Gaps = 21/361 (5%)

Query: 1   MDDLALALKEVATEANQVKAKLTLSQVELEHTKGDVERWRAMXXXXXXXXXXXXDVTRKE 60
           MDDLA ALKEVATEANQVK KLTLSQVELEHTKGD ERW+ M            D TRKE
Sbjct: 211 MDDLAFALKEVATEANQVKTKLTLSQVELEHTKGDAERWKTMLESTEEKYKELLDATRKE 270

Query: 61  ADRFKNTXXXXXXXXXXXXXXWNGKETEFVNCIRRAEEERLLAQKESNRIVDLLXXXXXX 120
           A+RFKNT              WNGKETEFV CI+RA+EERLLAQ+E++R++DLL      
Sbjct: 271 AERFKNTAERLRLEAEESLLAWNGKETEFVTCIKRADEERLLAQQETSRLLDLLQEAESK 330

Query: 121 XXXXXXXXXXLRDILKQXXXXXXXXXXXXXXXXXXXXRLQDSLTLLVQENEMLKIHEAAS 180
                     LRDILKQ                    RLQDSL+LLV ENEMLKIHEAAS
Sbjct: 331 TKVSKEENQKLRDILKQALNEANVAKEASEIAKAENGRLQDSLSLLVHENEMLKIHEAAS 390

Query: 181 FENIKELKRMLSESSIKEFKNDDIDRLLDKESGKKTKAQHSHSSTE-----KDSKNLNKT 235
           FENIKELK+MLSE+S KEF+ +D+++ L  + G KTK  H HS  +     K+SK+L+KT
Sbjct: 391 FENIKELKKMLSETSTKEFRIEDLEKYLTTKEGTKTKGHHHHSGEQHHKEPKESKSLSKT 450

Query: 236 FSFNLKDMITPHNKQQHKVGGSEEANNKE-TKDDDTLRGSIFDEV--DSSDSESRHDEMA 292
           FS N+KDMITPH KQQHK G +EE  NKE   +DDTL+GSIFDEV  DS DSE+ H EM 
Sbjct: 451 FSLNIKDMITPH-KQQHKGGNNEEVVNKEIIVEDDTLKGSIFDEVEDDSPDSET-HVEMG 508

Query: 293 --EYFDHLD----DAPESDXXXXXXXXXXXXFGDLIRRKG-----YHYHQKEPSNEENLQ 341
             E FDHLD    D  E+D            FGDLIRRK       +  +KE  NEE+LQ
Sbjct: 509 IHEDFDHLDESHFDDSEADRNNRKSKALLRRFGDLIRRKSTTTATNNNTRKELPNEEHLQ 568

Query: 342 T 342
           T
Sbjct: 569 T 569