Miyakogusa Predicted Gene
- Lj6g3v0550640.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v0550640.2 tr|G7J386|G7J386_MEDTR tRNA
(Cytosine-5-)-methyltransferase NSUN2 OS=Medicago truncatula
GN=MTR_3g08,76.53,0,RCMTFAMILY,RNA (C5-cytosine) methyltransferase;
RCMTNCL1,tRNA (C5-cytosine) methyltransferase, NCL1;,CUFF.58020.2
(439 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g086950.1 | tRNA (cytosine(34)-C(5))-methyltransferase-lik... 672 0.0
Medtr8g089980.1 | tRNA (cytosine(34)-C(5))-methyltransferase-lik... 644 0.0
Medtr3g460700.1 | NOL1/NOP2/sun family RNA methylase, putative |... 88 1e-17
Medtr8g075430.1 | NOL1/NOP2/sun family RNA methylase, putative |... 67 4e-11
Medtr5g096020.1 | ribosomal RNA small subunit methyltransferase ... 64 2e-10
Medtr8g075430.2 | NOL1/NOP2/sun family RNA methylase, putative |... 60 4e-09
Medtr3g104760.1 | NOL1/NOP2/sun family RNA methylase, putative |... 57 3e-08
>Medtr3g086950.1 | tRNA (cytosine(34)-C(5))-methyltransferase-like
protein | HC | chr3:39418089-39425597 | 20130731
Length = 784
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/425 (76%), Positives = 362/425 (85%), Gaps = 13/425 (3%)
Query: 10 TCSTLAIQNPAFDHYYKEQNIVSPEEWDSFMQVLTTPLPAAFRINSCSRSSADVRSQLEN 69
T + IQNP FDHYYKEQNIVS EEWDSFMQVL TPLPAAFRINS S AD+RSQLEN
Sbjct: 35 TNNLFDIQNPDFDHYYKEQNIVSLEEWDSFMQVLRTPLPAAFRINSSSLFHADIRSQLEN 94
Query: 70 DFVQSLQAKVVEEDSHTEALKPLPWYPDNLAWHSNFSRMQLRKNRTLRRFHEFLKLENEL 129
DF +LQA V E D EA++PLPWYP+NLAWHSNFSRMQLRKN++L+RFHEFLKLENE+
Sbjct: 95 DFAPALQAMVDEVDEE-EAIRPLPWYPNNLAWHSNFSRMQLRKNQSLKRFHEFLKLENEI 153
Query: 130 GNITRQEAVSMVPPMFLDVHSNHFVLDMCAAPGSKTFQLLEILHQSSKAGSLPDGMVIAN 189
GNITRQEAVSMVPP+FLDVHSNH VLDMCAAPGSKTFQLLEILH+S+KAGSLPDGMV+AN
Sbjct: 154 GNITRQEAVSMVPPLFLDVHSNHVVLDMCAAPGSKTFQLLEILHRSTKAGSLPDGMVVAN 213
Query: 190 DLDVQRCNLLIYQTKRMCTANLIVTNHEAQHFPGCHLNMHDGTMEADEHITQLLFDRILC 249
DLDVQRCNLLI+Q KRMCTANLIVTNHEAQHFP C LNM M D+H +QLLFDR+LC
Sbjct: 214 DLDVQRCNLLIHQIKRMCTANLIVTNHEAQHFPRCQLNMDCDIMGPDQHNSQLLFDRVLC 273
Query: 250 DVPCSGDGTFRKAPKLLNKWNTGTGNGLHNLQIIIAMRGVSLLKVGGRMVYSTCSMNPIE 309
DVPCSGDGT RKAP L +WNTGTGNGLHNLQI++AMRG+SLLKVGGRMVYSTCS+NPIE
Sbjct: 274 DVPCSGDGTLRKAPDLWRRWNTGTGNGLHNLQILVAMRGLSLLKVGGRMVYSTCSINPIE 333
Query: 310 NEAVVAEVLRRCRGSLELVDVSSELPQLVRRPGLKRWKVFDKGMSYVSCKDVPKFRRSIV 369
NEAV+AE+LRRC GS+ELVDVS ELPQL+ RPGLK WKV DKG VSCK+VPK R++V
Sbjct: 334 NEAVIAEILRRCEGSIELVDVSGELPQLICRPGLKTWKVCDKGKYLVSCKEVPKVLRNVV 393
Query: 370 LPSMFPNGGSYQDVVKSNSNCNISIGDEIADDVNGNSDDGVQEAENPVMHDIT-EVSALP 428
LPSMFPNGGSYQD NSNC DVNG+S+DGVQEAEN +MH+ T E+S P
Sbjct: 394 LPSMFPNGGSYQD-TDCNSNC----------DVNGHSEDGVQEAENHMMHEFTEELSDFP 442
Query: 429 LDRCV 433
LDRC+
Sbjct: 443 LDRCM 447
>Medtr8g089980.1 | tRNA (cytosine(34)-C(5))-methyltransferase-like
protein | HC | chr8:37616552-37624367 | 20130731
Length = 818
Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/418 (72%), Positives = 353/418 (84%), Gaps = 4/418 (0%)
Query: 17 QNPAFDHYYKEQNIVSPEEWDSFMQVLTTPLPAAFRINSCSRSSADVRSQLENDFVQSLQ 76
QNP+FD YYKEQ IV P+EWD F+ VL TPLPA+FRINS S+ + D+RSQLENDF SL+
Sbjct: 49 QNPSFDSYYKEQLIVDPQEWDRFIAVLRTPLPASFRINSSSQFADDIRSQLENDFAHSLR 108
Query: 77 AKVVEEDSHTEALKPLPWYPDNLAWHSNFSRMQLRKNRTLRRFHEFLKLENELGNITRQE 136
A+V E TEA++PLPWYP N AWHSNFSRMQLRKN+ L RFHEFLKLENE+GNITRQE
Sbjct: 109 AEVAE-GGETEAIRPLPWYPGNFAWHSNFSRMQLRKNQPLERFHEFLKLENEIGNITRQE 167
Query: 137 AVSMVPPMFLDVHSNHFVLDMCAAPGSKTFQLLEILHQSSKAGSLPDGMVIANDLDVQRC 196
AVSMVPP+FLDVHS+HFVLDMCAAPGSKTFQLLEI+HQS+KAGSLPDGMV+ANDLDV+RC
Sbjct: 168 AVSMVPPLFLDVHSDHFVLDMCAAPGSKTFQLLEIIHQSTKAGSLPDGMVVANDLDVKRC 227
Query: 197 NLLIYQTKRMCTANLIVTNHEAQHFPGCHLNMHDGTMEADEHITQLLFDRILCDVPCSGD 256
NLLI+QTKRMCTANLIVTNHEAQHFPGC L + ME D +I QLLFDR+LCDVPCSGD
Sbjct: 228 NLLIHQTKRMCTANLIVTNHEAQHFPGCRLKGNYDRMELDHNIHQLLFDRVLCDVPCSGD 287
Query: 257 GTFRKAPKLLNKWNTGTGNGLHNLQIIIAMRGVSLLKVGGRMVYSTCSMNPIENEAVVAE 316
GT RKAP + KWN+G G GLH+LQ++IAMRG+SLLK+GGRMVYSTCSMNPIENEAVVAE
Sbjct: 288 GTLRKAPDMWRKWNSGLGQGLHSLQVLIAMRGLSLLKIGGRMVYSTCSMNPIENEAVVAE 347
Query: 317 VLRRCRGSLELVDVSSELPQLVRRPGLKRWKVFDKGMSYVSCKDVPKFRRSIVLPSMFPN 376
VLRRC S++LVDVSSELPQL+RRPGLKRWKV+DK +VS KDVPKFRRS++L SMFP+
Sbjct: 348 VLRRCGESVKLVDVSSELPQLIRRPGLKRWKVYDKSSWFVSSKDVPKFRRSVILSSMFPS 407
Query: 377 GGSYQDVVKSNSNCNISIGDEIADDVNGNSDDGVQEAENPVMHD-ITEVSALPLDRCV 433
G YQD+ +SNCN+ + D+I N ++D ++ ENPVM + EVS PL+ C+
Sbjct: 408 GKGYQDL--GDSNCNVDMEDDITSVENEKAEDVIEALENPVMAESAEEVSDFPLEHCM 463
>Medtr3g460700.1 | NOL1/NOP2/sun family RNA methylase, putative | HC
| chr3:23817126-23809675 | 20130731
Length = 657
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 87/190 (45%), Gaps = 26/190 (13%)
Query: 135 QEAVSMVPPMFLDVHSNHFVLDMCAAPGSKTFQLLEILHQSSKAGSLPDGMVIANDLDVQ 194
Q A S +P M L ++DM AAPG KT + ++ S G++ AN++ V
Sbjct: 296 QSASSFLPVMALAPQEKERIVDMAAAPGGKTTYIAALMKNS--------GIIFANEMKVP 347
Query: 195 RCNLLIYQTKRMCTANLIVTNHEAQHFPGCHLNMHDGTMEADEHITQLLFDRILCDVPCS 254
R L RM +N +V+N++ + P L + DR+L D PCS
Sbjct: 348 RLKSLTANLHRMGVSNTVVSNYDGKELPKV-LGFNS-------------VDRVLLDAPCS 393
Query: 255 GDGTFRKAPKLLNKWNTGTGNGLHNLQIIIAMRGVSLL----KVGGRMVYSTCSMNPIEN 310
G G K + N +LQ + + + ++ K GG +VYSTCS+ EN
Sbjct: 394 GTGVISKDESVKTSKNLEDIKKCAHLQKELLLAAIDMVDSYSKSGGYVVYSTCSIMVAEN 453
Query: 311 EAVVAEVLRR 320
EAV+ VL+R
Sbjct: 454 EAVIDYVLKR 463
>Medtr8g075430.1 | NOL1/NOP2/sun family RNA methylase, putative | HC
| chr8:31899500-31903095 | 20130731
Length = 389
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 75/308 (24%), Positives = 118/308 (38%), Gaps = 72/308 (23%)
Query: 130 GNITRQEAVSMVPPMFLDVHSNHFVLDMCAAPGSKTFQLLEILHQSSKAGSLPDG----- 184
G I +A S M L + VLD+CAAPG+K +L++L S +
Sbjct: 86 GKIYGIDASSGAAVMALGIEPGDHVLDLCAAPGAKLCMMLDLLGDSGSVTGVDAARHRLA 145
Query: 185 ----MVIANDLDVQRCNLLIY--------------------------------------- 201
M+ L RC L +
Sbjct: 146 ACRTMLQKYKLG-DRCRLFVADGTTFSVIPLGFCSDSCESRLEERMDVFKEWTSRRPWKE 204
Query: 202 --QTKRMCTANLIVTNHEAQH-FPGCH---LNMHDGTM---EADEHITQLLFDRILCDVP 252
+TK+ T ++ +H + + G H + + G + + I +D++L D
Sbjct: 205 RKRTKKCGTPQVVSKSHPPELIYYGGHSGVIGLTKGELYKTASKNEIASYGYDKVLVDAE 264
Query: 253 CSGDGTFRKAPKLLNKWNTGT----------GNGLHNLQIIIAMRGVSLLKVGGRMVYST 302
C+ DG+ + K +W T + LH LQ+ + G LLKVGG +VYST
Sbjct: 265 CTHDGSIKHIQKF-EQWGWITLQRRVLDAERTDDLHALQLNLLTNGFRLLKVGGSLVYST 323
Query: 303 CSMNPIENEAVVAEVLRR-CRGSLELVDVSSELPQLVRRPGLKRWKVFDKGMSYVSCKDV 361
CS+ +NE V+ + L+ L +D + P R K W+ FD S S V
Sbjct: 324 CSLTVAQNEDVMEQFLKENITAELTEIDAARNWPCKGGRI-RKTWR-FDPLTSQTSGLFV 381
Query: 362 PKFRRSIV 369
KFR+ ++
Sbjct: 382 AKFRKVVI 389
>Medtr5g096020.1 | ribosomal RNA small subunit methyltransferase B |
HC | chr5:41982400-41975357 | 20130731
Length = 529
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 84/178 (47%), Gaps = 26/178 (14%)
Query: 145 FLDVHSNHFVLDMCAAPGSKTFQLLEILHQSSKAGSLPDGMVIANDLDVQRCNLLIYQTK 204
+D ++D CAAPG KT + H S + GMV A D++ R +L +T
Sbjct: 331 IVDPQPGETIVDCCAAPGGKTLYMAA--HLSGQ------GMVYAVDVNSGRLRIL-KETA 381
Query: 205 RMCTANLIVTNHEAQHFPGCHLNMHDGTMEADEHITQLLFDRILCDVPCSGDGTFRKAPK 264
++ + +VT H ++ T+ E + +++L D PCSG G K
Sbjct: 382 KLHQVDGVVTT--------VHADLR--TLTDGEPLKS---NKVLLDAPCSGLGVLSKRAD 428
Query: 265 LLNKWNTGTGN--GLHNLQIIIAMRGVSLLKVGGRMVYSTCSMNPIENEAVVAEVLRR 320
L +WN + L LQ + +L+K GG +VYSTCS++P EN+ VA L R
Sbjct: 429 L--RWNRKLEDMEQLKKLQDELLDAASTLVKPGGVLVYSTCSIDPEENDDRVAAFLER 484
>Medtr8g075430.2 | NOL1/NOP2/sun family RNA methylase, putative | HC
| chr8:31899500-31903095 | 20130731
Length = 290
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 67/142 (47%), Gaps = 14/142 (9%)
Query: 239 ITQLLFDRILCDVPCSGDGTFRKAPKLLNKWNTGT----------GNGLHNLQIIIAMRG 288
I +D++L D C+ DG+ + K +W T + LH LQ+ + G
Sbjct: 152 IASYGYDKVLVDAECTHDGSIKHIQKF-EQWGWITLQRRVLDAERTDDLHALQLNLLTNG 210
Query: 289 VSLLKVGGRMVYSTCSMNPIENEAVVAEVLRR-CRGSLELVDVSSELPQLVRRPGLKRWK 347
LLKVGG +VYSTCS+ +NE V+ + L+ L +D + P R K W+
Sbjct: 211 FRLLKVGGSLVYSTCSLTVAQNEDVMEQFLKENITAELTEIDAARNWPCKGGRI-RKTWR 269
Query: 348 VFDKGMSYVSCKDVPKFRRSIV 369
FD S S V KFR+ ++
Sbjct: 270 -FDPLTSQTSGLFVAKFRKVVI 290
>Medtr3g104760.1 | NOL1/NOP2/sun family RNA methylase, putative | HC
| chr3:48292253-48297828 | 20130731
Length = 509
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 82/196 (41%), Gaps = 29/196 (14%)
Query: 130 GNITRQ-EAVSMVPPMFLDVHSNHFVLDMCAAPGSKTFQLLEILHQSSKAGSLPDGMVIA 188
G+I Q +A SMV P L VLD CAAPG+KT L ++ + G +IA
Sbjct: 224 GSIFLQGKASSMVAPA-LSPEPGWEVLDACAAPGNKTVHLAALMKRK--------GRIIA 274
Query: 189 NDLDVQRCNLLIYQTKRMCTANLIVTNHEAQHFPGCHLNMHDGTMEADEHITQLLFDRIL 248
+L +R L K N+ V N + ++N D IL
Sbjct: 275 CELKKERIKRLNDTIKLSGATNIQVLNEDF-----LNINSKDPAYSK--------VKAIL 321
Query: 249 CDVPCSGDGTF-RKAPKLLNKWNTGTGNGLHNLQIIIA-----MRGVSLLKVGGRMVYST 302
D CSG GT + LL G + L + A ++ L R+VYST
Sbjct: 322 LDPSCSGSGTAASRLDHLLPSKAAGQNVDMERLNKLAAFQRKALQHAFLFPALERVVYST 381
Query: 303 CSMNPIENEAVVAEVL 318
CS+N IENE VV VL
Sbjct: 382 CSINQIENEDVVKSVL 397