Miyakogusa Predicted Gene

Lj6g3v0528580.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0528580.1 Non Characterized Hit- tr|D8UI90|D8UI90_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,26.92,0.00002,seg,NULL; TBCC,Tubulin binding cofactor C;
C_CAP_COFACTOR_C,C-CAP/cofactor C-like domain; Domain in ,CUFF.58016.1
         (353 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g090180.1 | tubulin folding cofactor C, putative | HC | ch...   477   e-135
Medtr1g108500.1 | MADS-box transcription factor family protein, ...   111   1e-24

>Medtr8g090180.1 | tubulin folding cofactor C, putative | HC |
           chr8:37809822-37808334 | 20130731
          Length = 350

 Score =  477 bits (1228), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 242/334 (72%), Positives = 268/334 (80%), Gaps = 8/334 (2%)

Query: 21  LQKKHLSMLERLSKRHQQQPXXXXXXXXXXXXXXXXXXXXDLKASIDSRLAESQSISS-D 79
           LQKKHLSML+RLSKRH  +                      LK+SI+S L+ESQ ISS D
Sbjct: 24  LQKKHLSMLDRLSKRHPTKSTTTSTEPPTESTSSFLSRFSQLKSSIESHLSESQFISSSD 83

Query: 80  PSQLKTHFNDITASISDLEKLVAENSYLLPSYDVRSSLKTVSDLKRSLDSLASELIPKKK 139
           PS LK+HF+ I+ SISDLEKLVA++SY LPSYDVRSSLKTVSD KR+LD+L+SELIPKKK
Sbjct: 84  PSHLKSHFDKISQSISDLEKLVAQSSYFLPSYDVRSSLKTVSDFKRTLDNLSSELIPKKK 143

Query: 140 FSFKSKNATAKRDKDSVVPEPKQTPPPDRDSVKSSFVPRDSPGFRNETGRVLVEEFRGSE 199
           FSFK+K          VV E KQ+  P  DSV+SSF  RDSPGFRN+TG VL+ EF+ SE
Sbjct: 144 FSFKNKAT-------KVVAESKQSITPVLDSVQSSFTVRDSPGFRNKTGEVLIGEFKESE 196

Query: 200 VGEFTVSDLDSCEVRIIGCVRALFVHRLKNCRVYVGPVTGSVLIEGVEGCVFALASHQIR 259
            GEFTVSDLDSCEVRIIGCVRALFVHRLKNCRVYVGPVTGS+LIE VEGCVF +ASHQIR
Sbjct: 197 FGEFTVSDLDSCEVRIIGCVRALFVHRLKNCRVYVGPVTGSILIEEVEGCVFVIASHQIR 256

Query: 260 IHGARGSDFYLRVRSRPIIEDSNGVRFAPYCLSYQGIEEDLRGAGLDAETGNWANVDDFK 319
           IHGA+ SDFYLRVRSRPI+ED  GVRFAPYCLSY+GIE DL GAGLD ETGNWANVDDF+
Sbjct: 257 IHGAKRSDFYLRVRSRPIVEDCIGVRFAPYCLSYRGIEGDLHGAGLDVETGNWANVDDFR 316

Query: 320 WLRAVQSPNWSILPEDERIGIVDISNSENGKEEI 353
           WLRAVQSPNWSILPE+ER  IVDISNSE  KEEI
Sbjct: 317 WLRAVQSPNWSILPENERAEIVDISNSECRKEEI 350


>Medtr1g108500.1 | MADS-box transcription factor family protein,
           putative | LC | chr1:49042688-49047472 | 20130731
          Length = 334

 Score =  111 bits (277), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/181 (40%), Positives = 84/181 (46%), Gaps = 79/181 (43%)

Query: 116 SLKTVSDLKRSLDSLASELIPKKKFSFKSKNATAKRDKDSVVPEPKQTPPPDRDSVKSSF 175
           SLK VSD KR+LD+L+ E+IPKK FSFK                         DS + SF
Sbjct: 230 SLKIVSDFKRTLDNLSFEIIPKKNFSFKI-----------------------LDSAQLSF 266

Query: 176 VPRDSPGFRNETGRVLVEEFRGSEVGEFTVSDLDSCEVRIIGCVRALFVHRLKNCRVYVG 235
             RDSPGFRN+TG VL+ EF  SEVGEFT+SDLDSCEVRI GC+R               
Sbjct: 267 TVRDSPGFRNKTGEVLIGEFNESEVGEFTISDLDSCEVRITGCIR--------------- 311

Query: 236 PVTGSVLIEGVEGCVFALASHQIRIHGARGSDFYLRVRSRPIIEDSNGVRFAPYCLSYQG 295
                                               VRSRPI+ED NGV       SYQG
Sbjct: 312 ------------------------------------VRSRPIVEDCNGVS-----KSYQG 330

Query: 296 I 296
           I
Sbjct: 331 I 331