Miyakogusa Predicted Gene

Lj6g3v0528510.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0528510.1 tr|F2EJF8|F2EJF8_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2 SV=1,51.09,3e-19,Ribosomal
proteins S24e, L23 and L15e,Ribosomal protein L23/L15e core domain; no
description,Nucleot,CUFF.58011.1
         (111 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g090225.1 | 50S ribosomal protein L23 | HC | chr8:37863819...   119   6e-28
Medtr3g087190.1 | 50S ribosomal protein L23 | HC | chr3:39536725...   110   3e-25
Medtr3g079680.1 | ribosomal protein L23 family protein, putative...    62   8e-11

>Medtr8g090225.1 | 50S ribosomal protein L23 | HC |
           chr8:37863819-37863139 | 20130731
          Length = 114

 Score =  119 bits (298), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 64/105 (60%), Positives = 78/105 (74%), Gaps = 7/105 (6%)

Query: 9   MIPIMPKT-SSDIKEISFKTLPSASKLEIKHVIESYYDLEVKKVRTLNMKGKKKHSSGFL 67
           MIP+MP + S D K+I+FKT+PS SK+EIKHV+ES+Y LEVKKVRTLN+KGK   +   L
Sbjct: 10  MIPLMPTSFSGDFKQITFKTIPSVSKVEIKHVVESFYQLEVKKVRTLNVKGKPSKNRS-L 68

Query: 68  YAKPDYKKAYVTLKKPISLTQDIFPLRTTNAA-----KDDKKMVA 107
            AKPDYKKAYVTLK P S + +IF   +T  A     KD+KKMVA
Sbjct: 69  VAKPDYKKAYVTLKNPASFSNNIFAFHSTANAVDDNNKDEKKMVA 113


>Medtr3g087190.1 | 50S ribosomal protein L23 | HC |
           chr3:39536725-39535762 | 20130731
          Length = 208

 Score =  110 bits (275), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 56/111 (50%), Positives = 78/111 (70%), Gaps = 2/111 (1%)

Query: 1   MTHIAYLPMIPIMPKTSSDIKEISFKTLPSASKLEIKHVIESYYDLEVKKVRTLNMKGKK 60
           + + A LP+  ++P   +DI EI+ KT+PSASK+EIK V+ES Y  +V+KVRTLNM GKK
Sbjct: 9   VVYFANLPIKLLLPTNFTDIHEIALKTIPSASKIEIKRVLESLYGFDVEKVRTLNMDGKK 68

Query: 61  KHSSGFLYAKPDYKKAYVTLKKPISLTQDIFPLRTTNAAKD--DKKMVAAS 109
           K   G + AKPDYKKA+VTLK P+ +  ++FP+R     K   +K+ +AAS
Sbjct: 69  KKRGGIVIAKPDYKKAFVTLKTPLLINPNLFPIREIEEDKKSLNKQAMAAS 119


>Medtr3g079680.1 | ribosomal protein L23 family protein, putative
          | HC | chr3:35960205-35958904 | 20130731
          Length = 151

 Score = 62.4 bits (150), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 44/73 (60%), Gaps = 14/73 (19%)

Query: 16 TSSDIKEISFKTLPSASKLEIKHVIESYYDLEVKKVRTLNMKGKKKHSSGFLYAKPDYKK 75
          T +DI EI+ KT+PSASK+EIK V+ES Y  E +               G + AKPDYKK
Sbjct: 36 TFTDIHEIALKTIPSASKIEIKRVLESLYGFEKR--------------GGIVIAKPDYKK 81

Query: 76 AYVTLKKPISLTQ 88
          A+VT K P SL +
Sbjct: 82 AFVTQKTPKSLNK 94