Miyakogusa Predicted Gene
- Lj6g3v0497370.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v0497370.1 Non Characterized Hit- tr|I1JG17|I1JG17_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.42349
PE,76.53,0,CRM,RNA-binding, CRM domain; no description,RNA-binding,
CRM domain; seg,NULL; YhbY-like,RNA-binding,CUFF.57922.1
(481 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g050760.5 | CRS1/YhbY (CRM) domain protein | HC | chr1:196... 556 e-158
Medtr1g050760.1 | CRS1/YhbY (CRM) domain protein | HC | chr1:196... 556 e-158
Medtr1g050760.3 | CRS1/YhbY (CRM) domain protein | HC | chr1:196... 556 e-158
Medtr1g050760.2 | CRS1/YhbY (CRM) domain protein | HC | chr1:196... 503 e-142
Medtr1g050760.4 | CRS1/YhbY (CRM) domain protein | HC | chr1:196... 503 e-142
Medtr4g067300.1 | CRS1/YhbY (CRM) domain protein | HC | chr4:254... 152 9e-37
Medtr4g120880.2 | CRS1/YhbY domain protein | HC | chr4:50063811-... 133 4e-31
Medtr4g120880.1 | CRS1/YhbY domain protein | HC | chr4:50064035-... 133 4e-31
Medtr6g004480.1 | CRS1/YhbY (CRM) domain protein | HC | chr6:294... 124 2e-28
Medtr1g475240.1 | CRS1/YhbY (CRM) domain protein | HC | chr1:332... 117 2e-26
Medtr1g075190.1 | CRS1/YhbY (CRM) domain protein | HC | chr1:332... 117 2e-26
Medtr4g120880.3 | CRS1/YhbY domain protein | HC | chr4:50063978-... 113 4e-25
Medtr4g126140.1 | CRS1/YhbY (CRM) domain protein | HC | chr4:524... 111 1e-24
Medtr6g008410.1 | group IIA intron splicing facilitator CRS1 | H... 102 9e-22
Medtr6g084410.1 | CRS1/YhbY (CRM) domain protein | HC | chr6:315... 97 5e-20
Medtr2g100660.1 | group IIA intron splicing facilitator CRS1 | H... 84 4e-16
Medtr8g104340.1 | CRS1/YhbY (CRM) domain protein, putative | HC ... 75 2e-13
Medtr1g040020.2 | 50S ribosomal protein L22 | HC | chr1:14644190... 54 4e-07
Medtr1g040020.3 | 50S ribosomal protein L22 | HC | chr1:14644190... 54 4e-07
Medtr1g040020.1 | 50S ribosomal protein L22 | HC | chr1:14644188... 54 4e-07
Medtr7g075885.1 | CRS2-associated factor 1 | HC | chr7:28515935-... 49 9e-06
>Medtr1g050760.5 | CRS1/YhbY (CRM) domain protein | HC |
chr1:19656869-19653698 | 20130731
Length = 443
Score = 556 bits (1433), Expect = e-158, Method: Compositional matrix adjust.
Identities = 301/460 (65%), Positives = 339/460 (73%), Gaps = 23/460 (5%)
Query: 26 APNLFISCIGSSFSQDQLQGASTTTLAISSSPIYRCYQHLVCG-QAQEPTFGHRHDL-KP 83
A +F S + + F Q +STT L + + +++C AQE H+ L
Sbjct: 2 AWRIFTSPLLNKF---QFLSSSTTFLLRHKTSL----NYVICKVYAQE---HHQFKLPST 51
Query: 84 SAFIGHLSFHSGPFLKCN-DKMVEQLQDSEKSPSDSCADNAKVQRKKLKGKRAVVRWLXX 142
S +G LSFHS PFLKCN DK+VEQ P DS D RKKLKGKRAVVRWL
Sbjct: 52 STRVGCLSFHSTPFLKCNHDKVVEQ-------PQDSDGDVKVPARKKLKGKRAVVRWLKF 104
Query: 143 XXXXXXXEYERMTXXXXXXXXXXXXXXXXXXXXXXLKKIEPTETSEITHDPEILTPEEHF 202
E++RMT LKKIEPTE+SE HDPEILTPEEHF
Sbjct: 105 FRFKKKKEFQRMTTEERILYKLLKARKKEERLREALKKIEPTESSETIHDPEILTPEEHF 164
Query: 203 FFLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIIKTFSSEEVKEIATELARL 262
FFLKMGLK KNYVPVGRRGIYQGVILNMHLHWKKHQTL+V++KTFS+EEVKEIATELARL
Sbjct: 165 FFLKMGLKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSAEEVKEIATELARL 224
Query: 263 TGGIVLDIHEENTIIMYRGKNYSQPPTEIMSPRITLPRKKALDKSIYRDGLRAVRRYIPR 322
TGGIVL IHEE+TIIMYRGKNYSQPPTEIMSPR+TLPRKKALDKS YRDGLRAVRRYIP+
Sbjct: 225 TGGIVLGIHEEDTIIMYRGKNYSQPPTEIMSPRVTLPRKKALDKSKYRDGLRAVRRYIPK 284
Query: 323 LEQELEILRAQIQSTGESTTEAAEGIQKIDGASVESGGISNLEPQNSDKLRELINGNMGC 382
LEQELEILRAQ QST ES TEAAEGIQ D SVE +SNL+ + DK+ + N N C
Sbjct: 285 LEQELEILRAQFQSTAESNTEAAEGIQISDKVSVEPSSVSNLQLEKLDKVGAMFNDNNSC 344
Query: 383 PEDETDIESGLDSCSDTDKLSDIFETDSDVDDLVKEEKPLYLDEFDNFPEQSDGESDDFE 442
EDE ++S LDS S DKLSDIFETDSD +DLVKEEKPLYLDEF+NFPEQSDG++DDFE
Sbjct: 345 SEDEAHMDSDLDSYS--DKLSDIFETDSDTEDLVKEEKPLYLDEFNNFPEQSDGDTDDFE 402
Query: 443 EHLRQVS-NSENMKKDVDSPKFDEVDRIFLRAASFLKKKR 481
EHL+Q+S NS+NM+KD D PKFDEVD+IFLRAASFLKKKR
Sbjct: 403 EHLQQISYNSKNMEKDADLPKFDEVDQIFLRAASFLKKKR 442
>Medtr1g050760.1 | CRS1/YhbY (CRM) domain protein | HC |
chr1:19656869-19653698 | 20130731
Length = 443
Score = 556 bits (1433), Expect = e-158, Method: Compositional matrix adjust.
Identities = 301/460 (65%), Positives = 339/460 (73%), Gaps = 23/460 (5%)
Query: 26 APNLFISCIGSSFSQDQLQGASTTTLAISSSPIYRCYQHLVCG-QAQEPTFGHRHDL-KP 83
A +F S + + F Q +STT L + + +++C AQE H+ L
Sbjct: 2 AWRIFTSPLLNKF---QFLSSSTTFLLRHKTSL----NYVICKVYAQE---HHQFKLPST 51
Query: 84 SAFIGHLSFHSGPFLKCN-DKMVEQLQDSEKSPSDSCADNAKVQRKKLKGKRAVVRWLXX 142
S +G LSFHS PFLKCN DK+VEQ P DS D RKKLKGKRAVVRWL
Sbjct: 52 STRVGCLSFHSTPFLKCNHDKVVEQ-------PQDSDGDVKVPARKKLKGKRAVVRWLKF 104
Query: 143 XXXXXXXEYERMTXXXXXXXXXXXXXXXXXXXXXXLKKIEPTETSEITHDPEILTPEEHF 202
E++RMT LKKIEPTE+SE HDPEILTPEEHF
Sbjct: 105 FRFKKKKEFQRMTTEERILYKLLKARKKEERLREALKKIEPTESSETIHDPEILTPEEHF 164
Query: 203 FFLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIIKTFSSEEVKEIATELARL 262
FFLKMGLK KNYVPVGRRGIYQGVILNMHLHWKKHQTL+V++KTFS+EEVKEIATELARL
Sbjct: 165 FFLKMGLKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSAEEVKEIATELARL 224
Query: 263 TGGIVLDIHEENTIIMYRGKNYSQPPTEIMSPRITLPRKKALDKSIYRDGLRAVRRYIPR 322
TGGIVL IHEE+TIIMYRGKNYSQPPTEIMSPR+TLPRKKALDKS YRDGLRAVRRYIP+
Sbjct: 225 TGGIVLGIHEEDTIIMYRGKNYSQPPTEIMSPRVTLPRKKALDKSKYRDGLRAVRRYIPK 284
Query: 323 LEQELEILRAQIQSTGESTTEAAEGIQKIDGASVESGGISNLEPQNSDKLRELINGNMGC 382
LEQELEILRAQ QST ES TEAAEGIQ D SVE +SNL+ + DK+ + N N C
Sbjct: 285 LEQELEILRAQFQSTAESNTEAAEGIQISDKVSVEPSSVSNLQLEKLDKVGAMFNDNNSC 344
Query: 383 PEDETDIESGLDSCSDTDKLSDIFETDSDVDDLVKEEKPLYLDEFDNFPEQSDGESDDFE 442
EDE ++S LDS S DKLSDIFETDSD +DLVKEEKPLYLDEF+NFPEQSDG++DDFE
Sbjct: 345 SEDEAHMDSDLDSYS--DKLSDIFETDSDTEDLVKEEKPLYLDEFNNFPEQSDGDTDDFE 402
Query: 443 EHLRQVS-NSENMKKDVDSPKFDEVDRIFLRAASFLKKKR 481
EHL+Q+S NS+NM+KD D PKFDEVD+IFLRAASFLKKKR
Sbjct: 403 EHLQQISYNSKNMEKDADLPKFDEVDQIFLRAASFLKKKR 442
>Medtr1g050760.3 | CRS1/YhbY (CRM) domain protein | HC |
chr1:19656869-19653698 | 20130731
Length = 443
Score = 556 bits (1433), Expect = e-158, Method: Compositional matrix adjust.
Identities = 301/460 (65%), Positives = 339/460 (73%), Gaps = 23/460 (5%)
Query: 26 APNLFISCIGSSFSQDQLQGASTTTLAISSSPIYRCYQHLVCG-QAQEPTFGHRHDL-KP 83
A +F S + + F Q +STT L + + +++C AQE H+ L
Sbjct: 2 AWRIFTSPLLNKF---QFLSSSTTFLLRHKTSL----NYVICKVYAQE---HHQFKLPST 51
Query: 84 SAFIGHLSFHSGPFLKCN-DKMVEQLQDSEKSPSDSCADNAKVQRKKLKGKRAVVRWLXX 142
S +G LSFHS PFLKCN DK+VEQ P DS D RKKLKGKRAVVRWL
Sbjct: 52 STRVGCLSFHSTPFLKCNHDKVVEQ-------PQDSDGDVKVPARKKLKGKRAVVRWLKF 104
Query: 143 XXXXXXXEYERMTXXXXXXXXXXXXXXXXXXXXXXLKKIEPTETSEITHDPEILTPEEHF 202
E++RMT LKKIEPTE+SE HDPEILTPEEHF
Sbjct: 105 FRFKKKKEFQRMTTEERILYKLLKARKKEERLREALKKIEPTESSETIHDPEILTPEEHF 164
Query: 203 FFLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIIKTFSSEEVKEIATELARL 262
FFLKMGLK KNYVPVGRRGIYQGVILNMHLHWKKHQTL+V++KTFS+EEVKEIATELARL
Sbjct: 165 FFLKMGLKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSAEEVKEIATELARL 224
Query: 263 TGGIVLDIHEENTIIMYRGKNYSQPPTEIMSPRITLPRKKALDKSIYRDGLRAVRRYIPR 322
TGGIVL IHEE+TIIMYRGKNYSQPPTEIMSPR+TLPRKKALDKS YRDGLRAVRRYIP+
Sbjct: 225 TGGIVLGIHEEDTIIMYRGKNYSQPPTEIMSPRVTLPRKKALDKSKYRDGLRAVRRYIPK 284
Query: 323 LEQELEILRAQIQSTGESTTEAAEGIQKIDGASVESGGISNLEPQNSDKLRELINGNMGC 382
LEQELEILRAQ QST ES TEAAEGIQ D SVE +SNL+ + DK+ + N N C
Sbjct: 285 LEQELEILRAQFQSTAESNTEAAEGIQISDKVSVEPSSVSNLQLEKLDKVGAMFNDNNSC 344
Query: 383 PEDETDIESGLDSCSDTDKLSDIFETDSDVDDLVKEEKPLYLDEFDNFPEQSDGESDDFE 442
EDE ++S LDS S DKLSDIFETDSD +DLVKEEKPLYLDEF+NFPEQSDG++DDFE
Sbjct: 345 SEDEAHMDSDLDSYS--DKLSDIFETDSDTEDLVKEEKPLYLDEFNNFPEQSDGDTDDFE 402
Query: 443 EHLRQVS-NSENMKKDVDSPKFDEVDRIFLRAASFLKKKR 481
EHL+Q+S NS+NM+KD D PKFDEVD+IFLRAASFLKKKR
Sbjct: 403 EHLQQISYNSKNMEKDADLPKFDEVDQIFLRAASFLKKKR 442
>Medtr1g050760.2 | CRS1/YhbY (CRM) domain protein | HC |
chr1:19656435-19653698 | 20130731
Length = 328
Score = 503 bits (1296), Expect = e-142, Method: Compositional matrix adjust.
Identities = 246/305 (80%), Positives = 270/305 (88%), Gaps = 3/305 (0%)
Query: 178 LKKIEPTETSEITHDPEILTPEEHFFFLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKH 237
LKKIEPTE+SE HDPEILTPEEHFFFLKMGLK KNYVPVGRRGIYQGVILNMHLHWKKH
Sbjct: 25 LKKIEPTESSETIHDPEILTPEEHFFFLKMGLKSKNYVPVGRRGIYQGVILNMHLHWKKH 84
Query: 238 QTLKVIIKTFSSEEVKEIATELARLTGGIVLDIHEENTIIMYRGKNYSQPPTEIMSPRIT 297
QTL+V++KTFS+EEVKEIATELARLTGGIVL IHEE+TIIMYRGKNYSQPPTEIMSPR+T
Sbjct: 85 QTLQVVVKTFSAEEVKEIATELARLTGGIVLGIHEEDTIIMYRGKNYSQPPTEIMSPRVT 144
Query: 298 LPRKKALDKSIYRDGLRAVRRYIPRLEQELEILRAQIQSTGESTTEAAEGIQKIDGASVE 357
LPRKKALDKS YRDGLRAVRRYIP+LEQELEILRAQ QST ES TEAAEGIQ D SVE
Sbjct: 145 LPRKKALDKSKYRDGLRAVRRYIPKLEQELEILRAQFQSTAESNTEAAEGIQISDKVSVE 204
Query: 358 SGGISNLEPQNSDKLRELINGNMGCPEDETDIESGLDSCSDTDKLSDIFETDSDVDDLVK 417
+SNL+ + DK+ + N N C EDE ++S LDS S DKLSDIFETDSD +DLVK
Sbjct: 205 PSSVSNLQLEKLDKVGAMFNDNNSCSEDEAHMDSDLDSYS--DKLSDIFETDSDTEDLVK 262
Query: 418 EEKPLYLDEFDNFPEQSDGESDDFEEHLRQVS-NSENMKKDVDSPKFDEVDRIFLRAASF 476
EEKPLYLDEF+NFPEQSDG++DDFEEHL+Q+S NS+NM+KD D PKFDEVD+IFLRAASF
Sbjct: 263 EEKPLYLDEFNNFPEQSDGDTDDFEEHLQQISYNSKNMEKDADLPKFDEVDQIFLRAASF 322
Query: 477 LKKKR 481
LKKKR
Sbjct: 323 LKKKR 327
>Medtr1g050760.4 | CRS1/YhbY (CRM) domain protein | HC |
chr1:19656435-19653698 | 20130731
Length = 328
Score = 503 bits (1296), Expect = e-142, Method: Compositional matrix adjust.
Identities = 246/305 (80%), Positives = 270/305 (88%), Gaps = 3/305 (0%)
Query: 178 LKKIEPTETSEITHDPEILTPEEHFFFLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKH 237
LKKIEPTE+SE HDPEILTPEEHFFFLKMGLK KNYVPVGRRGIYQGVILNMHLHWKKH
Sbjct: 25 LKKIEPTESSETIHDPEILTPEEHFFFLKMGLKSKNYVPVGRRGIYQGVILNMHLHWKKH 84
Query: 238 QTLKVIIKTFSSEEVKEIATELARLTGGIVLDIHEENTIIMYRGKNYSQPPTEIMSPRIT 297
QTL+V++KTFS+EEVKEIATELARLTGGIVL IHEE+TIIMYRGKNYSQPPTEIMSPR+T
Sbjct: 85 QTLQVVVKTFSAEEVKEIATELARLTGGIVLGIHEEDTIIMYRGKNYSQPPTEIMSPRVT 144
Query: 298 LPRKKALDKSIYRDGLRAVRRYIPRLEQELEILRAQIQSTGESTTEAAEGIQKIDGASVE 357
LPRKKALDKS YRDGLRAVRRYIP+LEQELEILRAQ QST ES TEAAEGIQ D SVE
Sbjct: 145 LPRKKALDKSKYRDGLRAVRRYIPKLEQELEILRAQFQSTAESNTEAAEGIQISDKVSVE 204
Query: 358 SGGISNLEPQNSDKLRELINGNMGCPEDETDIESGLDSCSDTDKLSDIFETDSDVDDLVK 417
+SNL+ + DK+ + N N C EDE ++S LDS S DKLSDIFETDSD +DLVK
Sbjct: 205 PSSVSNLQLEKLDKVGAMFNDNNSCSEDEAHMDSDLDSYS--DKLSDIFETDSDTEDLVK 262
Query: 418 EEKPLYLDEFDNFPEQSDGESDDFEEHLRQVS-NSENMKKDVDSPKFDEVDRIFLRAASF 476
EEKPLYLDEF+NFPEQSDG++DDFEEHL+Q+S NS+NM+KD D PKFDEVD+IFLRAASF
Sbjct: 263 EEKPLYLDEFNNFPEQSDGDTDDFEEHLQQISYNSKNMEKDADLPKFDEVDQIFLRAASF 322
Query: 477 LKKKR 481
LKKKR
Sbjct: 323 LKKKR 327
>Medtr4g067300.1 | CRS1/YhbY (CRM) domain protein | HC |
chr4:25400463-25403698 | 20130731
Length = 428
Score = 152 bits (383), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 126/212 (59%), Gaps = 12/212 (5%)
Query: 178 LKKIEPTETSEITHDPEILTPEEHFFFLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKH 237
LK+ E + P+ LT EE + KM K NY+ VGRRG++ GVILNMH+HWKKH
Sbjct: 155 LKRYEVAKAQGPEVKPDGLTGEERHYLKKMAQKSSNYLQVGRRGLFGGVILNMHMHWKKH 214
Query: 238 QTLKVIIKTFSSEEVKEIATELARLTGGIVLDIHEENTIIMYRGKNYSQPPTEIMSPRIT 297
+T+K I K +V E A ELARL+GGI + I ++TII YRGKNY QP E+MSP T
Sbjct: 215 ETVKCICKPCKPGQVHEYAQELARLSGGIPIHIIGDDTIIFYRGKNYMQP--EVMSPIDT 272
Query: 298 LPRKKALDKSIYRDGLRAVRRYIPRLEQELEILRAQIQSTGESTTEAAEGIQKIDGASVE 357
L +KKAL+KS Y L +VRR+I E+ELE+ + G+ + + S+
Sbjct: 273 LSKKKALEKSKYEQSLESVRRFIAIAEKELELYHRHVALYGDPSNR--------NPLSIL 324
Query: 358 SGGI-SNLEPQNSDKLRELINGNMGCPEDETD 388
G I S++E +N DK + L + + E E+D
Sbjct: 325 DGPIGSSMEKRNHDK-KNLDSSSYYLSETESD 355
>Medtr4g120880.2 | CRS1/YhbY domain protein | HC |
chr4:50063811-50059450 | 20130731
Length = 347
Score = 133 bits (335), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 76/146 (52%), Positives = 96/146 (65%), Gaps = 6/146 (4%)
Query: 183 PTETSEITHDPEILTPEEHFFFLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKV 242
PTET DPEILT EE + + G K K+YVPVGRRG++ GV+LNMHLHWK H+T+KV
Sbjct: 191 PTET----FDPEILTEEERHYLKRTGEKKKHYVPVGRRGVFGGVVLNMHLHWKNHETVKV 246
Query: 243 IIKTFSSEEVKEIATELARLTGGIVLDIHEENTIIMYRGKNYSQPPTEIMSPRITLPRKK 302
I K + E + EL+RL+ GIV+DI II YRG NY QP ++MSP TL + K
Sbjct: 247 ICKPCKPGQAHEYSEELSRLSKGIVIDIKPNIIIIFYRGMNYVQP--KVMSPPDTLSKAK 304
Query: 303 ALDKSIYRDGLRAVRRYIPRLEQELE 328
AL+K Y L ++I RLE+ELE
Sbjct: 305 ALEKYRYEQSLEHTSQFIERLEKELE 330
>Medtr4g120880.1 | CRS1/YhbY domain protein | HC |
chr4:50064035-50059450 | 20130731
Length = 347
Score = 133 bits (335), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 76/146 (52%), Positives = 96/146 (65%), Gaps = 6/146 (4%)
Query: 183 PTETSEITHDPEILTPEEHFFFLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKV 242
PTET DPEILT EE + + G K K+YVPVGRRG++ GV+LNMHLHWK H+T+KV
Sbjct: 191 PTET----FDPEILTEEERHYLKRTGEKKKHYVPVGRRGVFGGVVLNMHLHWKNHETVKV 246
Query: 243 IIKTFSSEEVKEIATELARLTGGIVLDIHEENTIIMYRGKNYSQPPTEIMSPRITLPRKK 302
I K + E + EL+RL+ GIV+DI II YRG NY QP ++MSP TL + K
Sbjct: 247 ICKPCKPGQAHEYSEELSRLSKGIVIDIKPNIIIIFYRGMNYVQP--KVMSPPDTLSKAK 304
Query: 303 ALDKSIYRDGLRAVRRYIPRLEQELE 328
AL+K Y L ++I RLE+ELE
Sbjct: 305 ALEKYRYEQSLEHTSQFIERLEKELE 330
>Medtr6g004480.1 | CRS1/YhbY (CRM) domain protein | HC |
chr6:294438-300203 | 20130731
Length = 631
Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/150 (49%), Positives = 101/150 (67%), Gaps = 2/150 (1%)
Query: 178 LKKIEPTETSEITHDPEILTPEEHFFFLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKH 237
LKK E E HDPE+ TPE+ + K+G K KNYVPVG RG++ GV+ NMHLHWK H
Sbjct: 134 LKKYELPELPPPRHDPELFTPEQLQAYKKIGFKNKNYVPVGVRGVFGGVVQNMHLHWKFH 193
Query: 238 QTLKVIIKTFSSEEVKEIATELARLTGGIVLDIHEENTIIMYRGKNYSQPPTEIMSPRIT 297
+T++V F E +KE+A+ LARL+GGIVL++H TIIM+RG+NY QP I P T
Sbjct: 194 ETVQVCCDNFPKERIKEMASMLARLSGGIVLNVHNVKTIIMFRGRNYRQPKNLI--PINT 251
Query: 298 LPRKKALDKSIYRDGLRAVRRYIPRLEQEL 327
L ++KAL K+ + L + + I ++EQ+L
Sbjct: 252 LTKRKALFKARFEQALESQKLNIKKIEQDL 281
>Medtr1g475240.1 | CRS1/YhbY (CRM) domain protein | HC |
chr1:33263693-33269751 | 20130731
Length = 838
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 113/182 (62%), Gaps = 7/182 (3%)
Query: 178 LKKIEPT-ETSEITHDPEILTPEEHFFFLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKK 236
L K+E + + SE DPE +T EE F F K+GL+ K ++ +GRRG++ G I NMHLHWK
Sbjct: 611 LMKVEVSLKPSETRADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKY 670
Query: 237 HQTLKVIIKTFSSEEVKEIATELARLTGGIVLDIHEEN---TIIMYRGKNYSQPPTEIMS 293
+ +K+I+K + E VK+IA L +GG+++ + + + +I++YRGK+Y +P ++
Sbjct: 671 RELVKIIVKANNFEHVKKIALALEAESGGVLVSVDKVSKGYSILVYRGKDYQRP--SMLR 728
Query: 294 PRITLPRKKALDKSIYRDGLRAVRRYIPRLEQELEILRAQIQSTGESTTEAAEGI-QKID 352
P+ L ++KAL +SI A+ +I L+ ++E LR++I+ + E E + ++D
Sbjct: 729 PKNLLTKRKALARSIELQRHEALSSHISTLQSKVEKLRSEIEQIEKVKEEGDEALYNRLD 788
Query: 353 GA 354
A
Sbjct: 789 SA 790
>Medtr1g075190.1 | CRS1/YhbY (CRM) domain protein | HC |
chr1:33243553-33249532 | 20130731
Length = 838
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 113/182 (62%), Gaps = 7/182 (3%)
Query: 178 LKKIEPT-ETSEITHDPEILTPEEHFFFLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKK 236
L K+E + + SE DPE +T EE F F K+GL+ K ++ +GRRG++ G I NMHLHWK
Sbjct: 611 LMKVEVSLKPSETRADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKY 670
Query: 237 HQTLKVIIKTFSSEEVKEIATELARLTGGIVLDIHEEN---TIIMYRGKNYSQPPTEIMS 293
+ +K+I+K + E VK+IA L +GG+++ + + + +I++YRGK+Y +P ++
Sbjct: 671 RELVKIIVKANNFEHVKKIALALEAESGGVLVSVDKVSKGYSILVYRGKDYQRP--SMLR 728
Query: 294 PRITLPRKKALDKSIYRDGLRAVRRYIPRLEQELEILRAQIQSTGESTTEAAEGI-QKID 352
P+ L ++KAL +SI A+ +I L+ ++E LR++I+ + E E + ++D
Sbjct: 729 PKNLLTKRKALARSIELQRHEALSSHISTLQSKVEKLRSEIEQIEKVKEEGDEALYNRLD 788
Query: 353 GA 354
A
Sbjct: 789 SA 790
>Medtr4g120880.3 | CRS1/YhbY domain protein | HC |
chr4:50063978-50060237 | 20130731
Length = 310
Score = 113 bits (283), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/122 (52%), Positives = 81/122 (66%), Gaps = 6/122 (4%)
Query: 183 PTETSEITHDPEILTPEEHFFFLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKV 242
PTET DPEILT EE + + G K K+YVPVGRRG++ GV+LNMHLHWK H+T+KV
Sbjct: 191 PTET----FDPEILTEEERHYLKRTGEKKKHYVPVGRRGVFGGVVLNMHLHWKNHETVKV 246
Query: 243 IIKTFSSEEVKEIATELARLTGGIVLDIHEENTIIMYRGKNYSQPPTEIMSPRITLPRKK 302
I K + E + EL+RL+ GIV+DI II YRG NY QP ++MSP TL + K
Sbjct: 247 ICKPCKPGQAHEYSEELSRLSKGIVIDIKPNIIIIFYRGMNYVQP--KVMSPPDTLSKAK 304
Query: 303 AL 304
+
Sbjct: 305 VI 306
>Medtr4g126140.1 | CRS1/YhbY (CRM) domain protein | HC |
chr4:52429589-52424702 | 20130731
Length = 744
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 95/147 (64%), Gaps = 5/147 (3%)
Query: 192 DPEILTPEEHFFFLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIIKTFSSEE 251
D E LT EE F KMGL K Y+ +GRR +Y G I NMHLHWK + +K+++K + +
Sbjct: 586 DLETLTNEERSLFRKMGLSMKPYLLLGRRDVYAGTIENMHLHWKYRELVKILVKGKNLAQ 645
Query: 252 VKEIATELARLTGGIVLDIHEE---NTIIMYRGKNYSQPPTEIMSPRITLPRKKALDKSI 308
VK IA L +GG+++ + ++ + II+YRGKNY +P ++M P+ L R++AL +SI
Sbjct: 646 VKHIAISLEAESGGVLVSVDKDTKGHIIIIYRGKNYFRP--QVMRPKSLLSRRQALARSI 703
Query: 309 YRDGLRAVRRYIPRLEQELEILRAQIQ 335
A++ +I L++ +E+L+++++
Sbjct: 704 ELQRREALKHHISDLQEMIELLKSELE 730
>Medtr6g008410.1 | group IIA intron splicing facilitator CRS1 | HC |
chr6:2256928-2245549 | 20130731
Length = 1045
Score = 102 bits (254), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 119/221 (53%), Gaps = 15/221 (6%)
Query: 178 LKKIEPTETSEITHDPEILTPEEHFFFLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKH 237
L+K E + EI D E +T EE + ++GLK K ++ +GRRG++ G + NMHLHWK
Sbjct: 541 LEKDESLQEEEI--DKESITEEERYMLRRIGLKMKPFLLLGRRGVFDGTVENMHLHWKYR 598
Query: 238 QTLKVIIKTFSSEEVKEIATELARLTGGIVLDIHEEN---TIIMYRGKNYSQPPTEIMSP 294
+ +K+I S E + A L +GGI++ + N II+YRGKNYS+P + + P
Sbjct: 599 ELVKIICNQESVEYAHQTARTLEAESGGILVAVERVNKGYAIIVYRGKNYSRPDS--LRP 656
Query: 295 RITLPRKKALDKSIYRDGLRAVRRYIPRLEQELEILRAQIQSTGESTTEAAEGIQKIDGA 354
R L +K+AL +SI A++ ++ +L++ + L+ Q+ S+ + A+ ++ D A
Sbjct: 657 RTLLNKKQALKRSIEAQRREALKLHVLKLDKNINELKHQMVKDEASSEQIAKELRS-DLA 715
Query: 355 ---SVESGGISNLEPQNSDKLRELINGNMGC---PEDETDI 389
S E + N +P + ELI C PE T +
Sbjct: 716 TENSPEEASVDNQQPIQEQHI-ELIGSGGECQGEPESLTGL 755
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 196 LTPEEHFFFLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIIKTFSSEEVKEI 255
LT E ++G + K + VG+ G+ +G++ +H W++ + ++V+ + +K
Sbjct: 151 LTDGEILRLRELGYQMKQKIKVGKAGVTEGIVNGIHERWRRSEVVRVVCEDLCRINMKRT 210
Query: 256 ATELARLTGGIVLDIHEENTIIMYRGKNYSQP 287
L R TGG+V+ + II+YRG +Y P
Sbjct: 211 HDILERKTGGLVV-WRSGSKIILYRGIDYKYP 241
>Medtr6g084410.1 | CRS1/YhbY (CRM) domain protein | HC |
chr6:31586826-31594407 | 20130731
Length = 820
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 87/147 (59%), Gaps = 5/147 (3%)
Query: 191 HDPEILTPEEHFFFLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIIKTFSSE 250
+D E +T EE F ++GL+ K Y+ +G RG++ GVI NMHLHWK + +K++ K +
Sbjct: 616 YDQETITDEERVVFRQIGLRMKAYLQLGIRGVFDGVIENMHLHWKHRELVKLVTKQKNRA 675
Query: 251 EVKEIATELARLTGGIVLDIH---EENTIIMYRGKNYSQPPTEIMSPRITLPRKKALDKS 307
V++ A L +GGI++ I +E II YRGKNY +P T + PR L + KAL +S
Sbjct: 676 FVEDTARLLEYESGGILVAIEKVSKEFAIIYYRGKNYKRPLT--LRPRNLLTKAKALKRS 733
Query: 308 IYRDGLRAVRRYIPRLEQELEILRAQI 334
+ A+ +I LE +E ++ ++
Sbjct: 734 VAMLRHEALSNHITELETTIEQMKQEL 760
>Medtr2g100660.1 | group IIA intron splicing facilitator CRS1 | HC |
chr2:43276481-43269840 | 20130731
Length = 794
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 86/148 (58%), Gaps = 5/148 (3%)
Query: 192 DPEILTPEEHFFFLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIIKTFSSEE 251
D EI+T EE F KMGLK ++ + +GRRG++ GV+ +H HWK + KVI
Sbjct: 593 DLEIMTDEERECFRKMGLKMRSCLVLGRRGVFDGVLEGLHQHWKHREVAKVITMQRLISR 652
Query: 252 VKEIATELARLTGGIVLDI---HEENTIIMYRGKNYSQPPTEIMSPRITLPRKKALDKSI 308
V + L R +GGI++ + E II+YRGKNYS+P +I +T ++KAL +S+
Sbjct: 653 VIYTSQFLERESGGILVSVDQLKEGYAIIIYRGKNYSRPSEKIAKNLLT--KRKALRRSL 710
Query: 309 YRDGLRAVRRYIPRLEQELEILRAQIQS 336
+ +++ + + E+ + L+ ++++
Sbjct: 711 EMQRIGSLKFFAHQREKTISDLKLKLRN 738
>Medtr8g104340.1 | CRS1/YhbY (CRM) domain protein, putative | HC |
chr8:43946209-43953260 | 20130731
Length = 634
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 69/118 (58%), Gaps = 5/118 (4%)
Query: 194 EILTPEEHFFFLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIIKTFSSEEVK 253
E +T EE F +GL+ K Y+ + G++ VI NMHLHW++ + +K+I K S V+
Sbjct: 481 ETITDEERVMFRVVGLRLKVYLQLDTLGVFDSVIENMHLHWRQRELVKLITKQKSLAFVE 540
Query: 254 EIATELARLTGGIVLDIH---EENTIIMYRGKNYSQPPTEIMSPRITLPRKKALDKSI 308
E A+ L +GGI++ I + ++I YRGK+Y +P T + R L + KAL SI
Sbjct: 541 ETASLLEYKSGGILVAIDRLPKGFSLIYYRGKDYKRPIT--LRHRNLLTKTKALQHSI 596
>Medtr1g040020.2 | 50S ribosomal protein L22 | HC |
chr1:14644190-14639127 | 20130731
Length = 326
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 37/64 (57%)
Query: 1 MVQRQRHIFPILRHIHKGVDHVYRSAPNLFISCIGSSFSQDQLQGASTTTLAISSSPIYR 60
MVQ QRHIFPILR IHKG++ SA NL + SS SQ QLQ + + S P
Sbjct: 1 MVQWQRHIFPILRRIHKGLEPANHSATNLALYHSRSSLSQGQLQRQWSIGVPSISRPFDH 60
Query: 61 CYQH 64
+Q+
Sbjct: 61 RFQY 64
>Medtr1g040020.3 | 50S ribosomal protein L22 | HC |
chr1:14644190-14639174 | 20130731
Length = 326
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 37/64 (57%)
Query: 1 MVQRQRHIFPILRHIHKGVDHVYRSAPNLFISCIGSSFSQDQLQGASTTTLAISSSPIYR 60
MVQ QRHIFPILR IHKG++ SA NL + SS SQ QLQ + + S P
Sbjct: 1 MVQWQRHIFPILRRIHKGLEPANHSATNLALYHSRSSLSQGQLQRQWSIGVPSISRPFDH 60
Query: 61 CYQH 64
+Q+
Sbjct: 61 RFQY 64
>Medtr1g040020.1 | 50S ribosomal protein L22 | HC |
chr1:14644188-14639192 | 20130731
Length = 326
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 37/64 (57%)
Query: 1 MVQRQRHIFPILRHIHKGVDHVYRSAPNLFISCIGSSFSQDQLQGASTTTLAISSSPIYR 60
MVQ QRHIFPILR IHKG++ SA NL + SS SQ QLQ + + S P
Sbjct: 1 MVQWQRHIFPILRRIHKGLEPANHSATNLALYHSRSSLSQGQLQRQWSIGVPSISRPFDH 60
Query: 61 CYQH 64
+Q+
Sbjct: 61 RFQY 64
>Medtr7g075885.1 | CRS2-associated factor 1 | HC |
chr7:28515935-28511869 | 20130731
Length = 407
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 210 KCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIIKTFSSEEVKEIATELARLTGGIVLD 269
K K V +GR G+ +++ +H HWK + +++ + ++K + T+L T G V+
Sbjct: 177 KTKRQVNMGRDGLTHNMLIEIHNHWKYTEAVRIKCMGVPTVDMKNVCTQLEDKTFGKVIF 236
Query: 270 IHEENTIIMYRGKNYS 285
H T+I+YRG+NY+
Sbjct: 237 RH-GGTLILYRGRNYN 251