Miyakogusa Predicted Gene

Lj6g3v0497330.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0497330.1 tr|I3T625|I3T625_LOTJA Ribosomal protein OS=Lotus
japonicus PE=2 SV=1,99.52,0,Ribosomal protein L1,Ribosomal protein L1,
superfamily; no description,Ribosomal protein L1, 2-layer,CUFF.58300.1
         (210 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g012930.1 | ribosomal protein L1p/L10e family protein | HC...   374   e-104
Medtr2g086500.2 | ribosomal protein L1p/L10e family protein | HC...   373   e-104
Medtr2g086500.1 | ribosomal protein L1p/L10e family protein | HC...   373   e-104
Medtr3g070930.1 | ribosomal protein L1p/L10e family protein | HC...   371   e-103
Medtr3g070930.2 | ribosomal protein L1p/L10e family protein | HC...   214   4e-56
Medtr1g098350.1 | ribosomal protein L1p/L10e family protein | LC...    79   4e-15
Medtr2g064460.2 | ribosomal protein L1p/L10e family protein | HC...    52   5e-07
Medtr2g064460.1 | ribosomal protein L1p/L10e family protein | HC...    51   6e-07
Medtr6g080610.1 | hypothetical protein | LC | chr6:28964365-2897...    50   1e-06

>Medtr5g012930.1 | ribosomal protein L1p/L10e family protein | HC |
           chr5:4015468-4012928 | 20130731
          Length = 216

 Score =  374 bits (960), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/210 (87%), Positives = 190/210 (90%)

Query: 1   MSKLQNDAVREAISGIMTDSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQ+DAVREAI+GIM DSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSDAVREAITGIMGDSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDAQHVEEAEKIGLDWMDVEXXXXXXXXXXXXXXXXXXYHAFLASEAVIKQIP 120
           KMKICMLGDAQHVEEAEKIGL+ MDVE                  YHAFLASEAVIKQIP
Sbjct: 61  KMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 120

Query: 121 RLLGPGLNKAGKFPTLVTHQESLEAKVNETKAMVKFQLKKVLCMGVAVGNVSMEEKQIFQ 180
           RLLGPGLNKAGKFPTLV+HQESLEAKVNETKAMVKFQLKKVLCMGVAVGNVSM+EKQIFQ
Sbjct: 121 RLLGPGLNKAGKFPTLVSHQESLEAKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQIFQ 180

Query: 181 NVQLSVNFLVSLLKKNWQNVRCLYLKSTMG 210
           NVQLSVNFLVSLLKKNWQNVRCLYLKS+MG
Sbjct: 181 NVQLSVNFLVSLLKKNWQNVRCLYLKSSMG 210


>Medtr2g086500.2 | ribosomal protein L1p/L10e family protein | HC |
           chr2:36366473-36369406 | 20130731
          Length = 216

 Score =  373 bits (958), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 183/210 (87%), Positives = 190/210 (90%)

Query: 1   MSKLQNDAVREAISGIMTDSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQ++AVREAI+GIM DSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSEAVREAITGIMADSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDAQHVEEAEKIGLDWMDVEXXXXXXXXXXXXXXXXXXYHAFLASEAVIKQIP 120
           KMKICMLGDAQHVEEAEKIGL+ MDVE                  YHAFLASEAVIKQIP
Sbjct: 61  KMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 120

Query: 121 RLLGPGLNKAGKFPTLVTHQESLEAKVNETKAMVKFQLKKVLCMGVAVGNVSMEEKQIFQ 180
           RLLGPGLNKAGKFPTLV+HQESLEAKVNETKAMVKFQLKKVLCMGVAVGNVSM+EKQIFQ
Sbjct: 121 RLLGPGLNKAGKFPTLVSHQESLEAKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQIFQ 180

Query: 181 NVQLSVNFLVSLLKKNWQNVRCLYLKSTMG 210
           NVQLSVNFLVSLLKKNWQNVRCLYLKS+MG
Sbjct: 181 NVQLSVNFLVSLLKKNWQNVRCLYLKSSMG 210


>Medtr2g086500.1 | ribosomal protein L1p/L10e family protein | HC |
           chr2:36366468-36369431 | 20130731
          Length = 216

 Score =  373 bits (958), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 183/210 (87%), Positives = 190/210 (90%)

Query: 1   MSKLQNDAVREAISGIMTDSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQ++AVREAI+GIM DSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSEAVREAITGIMADSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDAQHVEEAEKIGLDWMDVEXXXXXXXXXXXXXXXXXXYHAFLASEAVIKQIP 120
           KMKICMLGDAQHVEEAEKIGL+ MDVE                  YHAFLASEAVIKQIP
Sbjct: 61  KMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 120

Query: 121 RLLGPGLNKAGKFPTLVTHQESLEAKVNETKAMVKFQLKKVLCMGVAVGNVSMEEKQIFQ 180
           RLLGPGLNKAGKFPTLV+HQESLEAKVNETKAMVKFQLKKVLCMGVAVGNVSM+EKQIFQ
Sbjct: 121 RLLGPGLNKAGKFPTLVSHQESLEAKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQIFQ 180

Query: 181 NVQLSVNFLVSLLKKNWQNVRCLYLKSTMG 210
           NVQLSVNFLVSLLKKNWQNVRCLYLKS+MG
Sbjct: 181 NVQLSVNFLVSLLKKNWQNVRCLYLKSSMG 210


>Medtr3g070930.1 | ribosomal protein L1p/L10e family protein | HC |
           chr3:31828632-31832817 | 20130731
          Length = 216

 Score =  371 bits (953), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 182/210 (86%), Positives = 189/210 (90%)

Query: 1   MSKLQNDAVREAISGIMTDSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQ++AVREAISGIM DSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSEAVREAISGIMADSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDAQHVEEAEKIGLDWMDVEXXXXXXXXXXXXXXXXXXYHAFLASEAVIKQIP 120
           KMK+CMLGDAQHVEEAEKIGL+ MDVE                  YHAFLASEAVIKQIP
Sbjct: 61  KMKLCMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 120

Query: 121 RLLGPGLNKAGKFPTLVTHQESLEAKVNETKAMVKFQLKKVLCMGVAVGNVSMEEKQIFQ 180
           RLLGPGLNKAGKFPTLV+HQESLE KVNETKAMVKFQLKKVLCMGVAVGNVSM+EKQIFQ
Sbjct: 121 RLLGPGLNKAGKFPTLVSHQESLEGKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQIFQ 180

Query: 181 NVQLSVNFLVSLLKKNWQNVRCLYLKSTMG 210
           NVQLSVNFLVSLLKKNWQNVRCLYLKS+MG
Sbjct: 181 NVQLSVNFLVSLLKKNWQNVRCLYLKSSMG 210


>Medtr3g070930.2 | ribosomal protein L1p/L10e family protein | HC |
           chr3:31828680-31832568 | 20130731
          Length = 152

 Score =  214 bits (545), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 105/130 (80%), Positives = 109/130 (83%)

Query: 1   MSKLQNDAVREAISGIMTDSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQ++AVREAISGIM DSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSEAVREAISGIMADSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDAQHVEEAEKIGLDWMDVEXXXXXXXXXXXXXXXXXXYHAFLASEAVIKQIP 120
           KMK+CMLGDAQHVEEAEKIGL+ MDVE                  YHAFLASEAVIKQIP
Sbjct: 61  KMKLCMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 120

Query: 121 RLLGPGLNKA 130
           RLLGPGLNK 
Sbjct: 121 RLLGPGLNKG 130


>Medtr1g098350.1 | ribosomal protein L1p/L10e family protein | LC |
           chr1:44277225-44276377 | 20130731
          Length = 144

 Score = 78.6 bits (192), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/91 (50%), Positives = 49/91 (53%), Gaps = 21/91 (23%)

Query: 39  NYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDWMDVEXXXXXXXXXXX 98
           NYDPQKDK FSGSVKLP                     +KIGL+ MDVE           
Sbjct: 47  NYDPQKDKCFSGSVKLP---------------------QKIGLESMDVEALKKLNKNKKL 85

Query: 99  XXXXXXXYHAFLASEAVIKQIPRLLGPGLNK 129
                  Y AFLASEAVIK+IPRLLGPGLNK
Sbjct: 86  VKKLAKKYRAFLASEAVIKKIPRLLGPGLNK 116


>Medtr2g064460.2 | ribosomal protein L1p/L10e family protein | HC |
           chr2:29161164-29164192 | 20130731
          Length = 428

 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 1/102 (0%)

Query: 106 YHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQE-SLEAKVNETKAMVKFQLKKVLCM 164
           Y  F A +A++  +PRLLG    K  K P  V  Q+ + + ++ +  +     L+   C 
Sbjct: 130 YDLFFADKAIVPLLPRLLGKQFFKKRKIPVQVDLQKKNWKEQIEKACSSALLFLRTGTCS 189

Query: 165 GVAVGNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLK 206
            V V  +SME  +I +NV  ++  +V +L K W  VR  ++K
Sbjct: 190 VVKVAKLSMERDEIVENVVAAMEGVVEVLPKKWAVVRSFHVK 231


>Medtr2g064460.1 | ribosomal protein L1p/L10e family protein | HC |
           chr2:29161164-29162462 | 20130731
          Length = 432

 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 1/102 (0%)

Query: 106 YHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQE-SLEAKVNETKAMVKFQLKKVLCM 164
           Y  F A +A++  +PRLLG    K  K P  V  Q+ + + ++ +  +     L+   C 
Sbjct: 130 YDLFFADKAIVPLLPRLLGKQFFKKRKIPVQVDLQKKNWKEQIEKACSSALLFLRTGTCS 189

Query: 165 GVAVGNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLK 206
            V V  +SME  +I +NV  ++  +V +L K W  VR  ++K
Sbjct: 190 VVKVAKLSMERDEIVENVVAAMEGVVEVLPKKWAVVRSFHVK 231


>Medtr6g080610.1 | hypothetical protein | LC |
           chr6:28964365-28972013 | 20130731
          Length = 99

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 113 EAVIKQIPRLLGPGLNKAGKFPTLVTHQESLEAKVNETKAMVKFQLKKVLCMGVAVGNV 171
           E  ++++  LL P    A K       +E LE KVN+ +AMVKF LKKVLCMGVA GNV
Sbjct: 31  EEQVRELYELLNPIGVHANK--DTAPSREYLETKVNQIEAMVKFHLKKVLCMGVANGNV 87