Miyakogusa Predicted Gene

Lj6g3v0497290.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0497290.1 Non Characterized Hit- tr|I3SL36|I3SL36_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,99.58,0,seg,NULL,CUFF.57915.1
         (255 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g070960.1 | transmembrane protein, putative | HC | chr3:31...   242   3e-64

>Medtr3g070960.1 | transmembrane protein, putative | HC |
           chr3:31854141-31857483 | 20130731
          Length = 231

 Score =  242 bits (617), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 129/239 (53%), Positives = 166/239 (69%), Gaps = 10/239 (4%)

Query: 18  MAISLNPIMSFSSKRLETKYQDATQYSVGASFSKATQMTPLSVMSRSRMLVKEKRFGHCF 77
           MAISLNPI++F+S +LET Y DA++YS GASF KA Q+T +S+ S +RM +KEKRFGH F
Sbjct: 1   MAISLNPIINFTSTKLETNYHDASRYSAGASFPKAAQITLVSITSGTRMFLKEKRFGHRF 60

Query: 78  SVADSDQLAAATGSKDSGDDAENSPSVNPADETFQLEAETNVESGSPTSDDSNGSIDQKE 137
           SVA+SDQL+    +KD G  A +S     A++  QL +    ++ SPT + SN S+   +
Sbjct: 61  SVANSDQLSTDASNKDIGSTASSS-----AND--QLTSTNPAQAESPTPEVSNVSVASPK 113

Query: 138 GSETSSATKRTARDRLRAARVLSRYKDSSKETKPEMGKSVLDAFKESEKGKKRSR--LPE 195
               ++ + +  R+R+RAARVL++ K+  K  K EMG SVL AFKES++GKKR R  LPE
Sbjct: 114 SQPVTTRSSQKVRERIRAARVLNQSKE-PKTAKSEMGSSVLAAFKESDRGKKRRRSGLPE 172

Query: 196 APSNLLDDSKRGMPKQGLTFDLPGGSDLXXXXXXXXXXXTVMFATTYLVWKVGAIHFNE 254
           AP NL DDSKRGMPK+G TFD PGGSDL           TVMF TTY+VWKVGAIHFN+
Sbjct: 173 APGNLFDDSKRGMPKEGWTFDFPGGSDLFLIIFSFVFISTVMFGTTYIVWKVGAIHFND 231