Miyakogusa Predicted Gene

Lj6g3v0484020.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0484020.1 tr|C1FHE8|C1FHE8_MICSR Predicted protein
OS=Micromonas sp. (strain RCC299 / NOUM17) GN=MICPUN_62058
,26.15,0.0000007,seg,NULL; coiled-coil,NULL,CUFF.57906.1
         (202 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g103240.1 | PPR superfamily protein | HC | chr1:46711858-4...   293   6e-80
Medtr4g032370.2 | PPR superfamily protein | HC | chr4:11140117-1...   286   7e-78
Medtr4g032370.1 | PPR superfamily protein | HC | chr4:11140080-1...   286   7e-78
Medtr1g103240.2 | PPR superfamily protein | HC | chr1:46711858-4...   241   4e-64
Medtr1g103240.4 | PPR superfamily protein | HC | chr1:46711858-4...   238   2e-63
Medtr1g103240.5 | PPR superfamily protein | HC | chr1:46711858-4...   238   2e-63
Medtr1g103240.6 | PPR superfamily protein | HC | chr1:46711858-4...   238   3e-63
Medtr1g103240.3 | PPR superfamily protein | HC | chr1:46711858-4...   234   4e-62
Medtr1g103240.7 | PPR superfamily protein | HC | chr1:46711593-4...   212   2e-55

>Medtr1g103240.1 | PPR superfamily protein | HC |
           chr1:46711858-46708329 | 20130731
          Length = 198

 Score =  293 bits (751), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 144/197 (73%), Positives = 163/197 (82%)

Query: 5   MEAMVKKFQSKFRKVREEMNQWNELQSCLISQFRNASYIVERLEVLQNSHNYGVLKCVSG 64
           ME MVKKFQSKFRKV+EEMN+W+ELQSCLISQFRNAS+I++RL+VLQ S+NYG L CVSG
Sbjct: 1   MEVMVKKFQSKFRKVKEEMNRWDELQSCLISQFRNASHILDRLQVLQMSNNYGTLNCVSG 60

Query: 65  VREALLAKQIESLVNILVSMKKTLEDFHCVVLSLEKIHREGRQLVKGGSSRPTIKQLQQR 124
           VR+ALL KQI SL NILVSM+KTLE+FHC+V SLEK+H +GRQLVKG SSR T+KQLQQR
Sbjct: 61  VRDALLEKQIGSLNNILVSMRKTLEEFHCIVASLEKLHCDGRQLVKGSSSRTTMKQLQQR 120

Query: 125 VGIKPTLNDCLDGLLFLHEIHNSEYXXXXXXXXXXXXXXXXPSASDLGALQQLLVDQPNL 184
           VG+KP L DCLDGLLFLHEI+ SEY                PSA DLGALQQLL D+PNL
Sbjct: 121 VGVKPRLIDCLDGLLFLHEIYYSEYLLKSSVVSVLSAMAIMPSACDLGALQQLLDDEPNL 180

Query: 185 LTEEVQFVFDVIFAEEL 201
           LTEEVQF+ D IFAEEL
Sbjct: 181 LTEEVQFLLDTIFAEEL 197


>Medtr4g032370.2 | PPR superfamily protein | HC |
           chr4:11140117-11145119 | 20130731
          Length = 198

 Score =  286 bits (733), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 142/198 (71%), Positives = 160/198 (80%), Gaps = 1/198 (0%)

Query: 5   MEAMVKKFQSKFRKVREEMNQWNELQSCLISQFRNASYIVERLEVLQNSHNYGVLKCVSG 64
           ME MVKKFQSKF KVREEMNQW+ELQS LISQFRNAS+IV+RL+VLQ S NYG+L CV  
Sbjct: 1   MEMMVKKFQSKFNKVREEMNQWDELQSRLISQFRNASHIVDRLQVLQKSSNYGILNCVGA 60

Query: 65  VREALLAKQIESLVNILVSMKKTLEDFHCVVLSLEKIHREGRQLVKGGSSRPTIKQLQQR 124
           V + LL KQI+SL  I  SM+KTLE+FHC+VLSLEK+HR+GRQLVKG SSRPT+KQLQQR
Sbjct: 61  VSDVLLQKQIDSLNTISFSMRKTLEEFHCIVLSLEKMHRDGRQLVKGSSSRPTMKQLQQR 120

Query: 125 VGIKPTLNDCLDGLLFLHEIHNSEYXXXXXXXXXXXXXXXXPS-ASDLGALQQLLVDQPN 183
           VG+KPTL DCLDGL FLHEI+ SEY                PS ASDLGALQQLLVDQPN
Sbjct: 121 VGVKPTLIDCLDGLSFLHEIYYSEYLLKTSIVSALSSMALIPSNASDLGALQQLLVDQPN 180

Query: 184 LLTEEVQFVFDVIFAEEL 201
           +LTEEVQ +FD IFAE+L
Sbjct: 181 ILTEEVQSLFDTIFAEDL 198


>Medtr4g032370.1 | PPR superfamily protein | HC |
           chr4:11140080-11145047 | 20130731
          Length = 198

 Score =  286 bits (733), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 142/198 (71%), Positives = 160/198 (80%), Gaps = 1/198 (0%)

Query: 5   MEAMVKKFQSKFRKVREEMNQWNELQSCLISQFRNASYIVERLEVLQNSHNYGVLKCVSG 64
           ME MVKKFQSKF KVREEMNQW+ELQS LISQFRNAS+IV+RL+VLQ S NYG+L CV  
Sbjct: 1   MEMMVKKFQSKFNKVREEMNQWDELQSRLISQFRNASHIVDRLQVLQKSSNYGILNCVGA 60

Query: 65  VREALLAKQIESLVNILVSMKKTLEDFHCVVLSLEKIHREGRQLVKGGSSRPTIKQLQQR 124
           V + LL KQI+SL  I  SM+KTLE+FHC+VLSLEK+HR+GRQLVKG SSRPT+KQLQQR
Sbjct: 61  VSDVLLQKQIDSLNTISFSMRKTLEEFHCIVLSLEKMHRDGRQLVKGSSSRPTMKQLQQR 120

Query: 125 VGIKPTLNDCLDGLLFLHEIHNSEYXXXXXXXXXXXXXXXXPS-ASDLGALQQLLVDQPN 183
           VG+KPTL DCLDGL FLHEI+ SEY                PS ASDLGALQQLLVDQPN
Sbjct: 121 VGVKPTLIDCLDGLSFLHEIYYSEYLLKTSIVSALSSMALIPSNASDLGALQQLLVDQPN 180

Query: 184 LLTEEVQFVFDVIFAEEL 201
           +LTEEVQ +FD IFAE+L
Sbjct: 181 ILTEEVQSLFDTIFAEDL 198


>Medtr1g103240.2 | PPR superfamily protein | HC |
           chr1:46711858-46709382 | 20130731
          Length = 180

 Score =  241 bits (615), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 120/181 (66%), Positives = 141/181 (77%), Gaps = 3/181 (1%)

Query: 5   MEAMVKKFQSKFRKVREEMNQWNELQSCLISQFRNASYIVERLEVLQNSHNYGVLKCVSG 64
           ME MVKKFQSKFRKV+EEMN+W+ELQSCLISQFRNAS+I++RL+VLQ S+NYG L CVSG
Sbjct: 1   MEVMVKKFQSKFRKVKEEMNRWDELQSCLISQFRNASHILDRLQVLQMSNNYGTLNCVSG 60

Query: 65  VREALLAKQIESLVNILVSMKKTLEDFHCVVLSLEKIHREGRQLVKGGSSRPTIKQLQQR 124
           VR+ALL KQI SL NILVSM+KTLE+FHC+V SLEK+H +GRQLVKG SSR T+KQLQQR
Sbjct: 61  VRDALLEKQIGSLNNILVSMRKTLEEFHCIVASLEKLHCDGRQLVKGSSSRTTMKQLQQR 120

Query: 125 VGIKPTLNDCLDGLLFLHEIHNSEYXXXXXXXXXXXXXXXXPSASDLGALQQLLVDQPNL 184
           VG+KP L DCLDGLLFLHEI+ SEY                P   D  A   + ++ PN+
Sbjct: 121 VGVKPRLIDCLDGLLFLHEIYYSEYLLKSSVVSVLSAMAIMPRYKDDNA---IWLNHPNV 177

Query: 185 L 185
           L
Sbjct: 178 L 178


>Medtr1g103240.4 | PPR superfamily protein | HC |
           chr1:46711858-46708495 | 20130731
          Length = 196

 Score =  238 bits (608), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 114/145 (78%), Positives = 131/145 (90%)

Query: 5   MEAMVKKFQSKFRKVREEMNQWNELQSCLISQFRNASYIVERLEVLQNSHNYGVLKCVSG 64
           ME MVKKFQSKFRKV+EEMN+W+ELQSCLISQFRNAS+I++RL+VLQ S+NYG L CVSG
Sbjct: 1   MEVMVKKFQSKFRKVKEEMNRWDELQSCLISQFRNASHILDRLQVLQMSNNYGTLNCVSG 60

Query: 65  VREALLAKQIESLVNILVSMKKTLEDFHCVVLSLEKIHREGRQLVKGGSSRPTIKQLQQR 124
           VR+ALL KQI SL NILVSM+KTLE+FHC+V SLEK+H +GRQLVKG SSR T+KQLQQR
Sbjct: 61  VRDALLEKQIGSLNNILVSMRKTLEEFHCIVASLEKLHCDGRQLVKGSSSRTTMKQLQQR 120

Query: 125 VGIKPTLNDCLDGLLFLHEIHNSEY 149
           VG+KP L DCLDGLLFLHEI+ SEY
Sbjct: 121 VGVKPRLIDCLDGLLFLHEIYYSEY 145


>Medtr1g103240.5 | PPR superfamily protein | HC |
           chr1:46711858-46708860 | 20130731
          Length = 172

 Score =  238 bits (607), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 114/145 (78%), Positives = 131/145 (90%)

Query: 5   MEAMVKKFQSKFRKVREEMNQWNELQSCLISQFRNASYIVERLEVLQNSHNYGVLKCVSG 64
           ME MVKKFQSKFRKV+EEMN+W+ELQSCLISQFRNAS+I++RL+VLQ S+NYG L CVSG
Sbjct: 1   MEVMVKKFQSKFRKVKEEMNRWDELQSCLISQFRNASHILDRLQVLQMSNNYGTLNCVSG 60

Query: 65  VREALLAKQIESLVNILVSMKKTLEDFHCVVLSLEKIHREGRQLVKGGSSRPTIKQLQQR 124
           VR+ALL KQI SL NILVSM+KTLE+FHC+V SLEK+H +GRQLVKG SSR T+KQLQQR
Sbjct: 61  VRDALLEKQIGSLNNILVSMRKTLEEFHCIVASLEKLHCDGRQLVKGSSSRTTMKQLQQR 120

Query: 125 VGIKPTLNDCLDGLLFLHEIHNSEY 149
           VG+KP L DCLDGLLFLHEI+ SEY
Sbjct: 121 VGVKPRLIDCLDGLLFLHEIYYSEY 145


>Medtr1g103240.6 | PPR superfamily protein | HC |
           chr1:46711858-46708817 | 20130731
          Length = 193

 Score =  238 bits (607), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 114/145 (78%), Positives = 131/145 (90%)

Query: 5   MEAMVKKFQSKFRKVREEMNQWNELQSCLISQFRNASYIVERLEVLQNSHNYGVLKCVSG 64
           ME MVKKFQSKFRKV+EEMN+W+ELQSCLISQFRNAS+I++RL+VLQ S+NYG L CVSG
Sbjct: 1   MEVMVKKFQSKFRKVKEEMNRWDELQSCLISQFRNASHILDRLQVLQMSNNYGTLNCVSG 60

Query: 65  VREALLAKQIESLVNILVSMKKTLEDFHCVVLSLEKIHREGRQLVKGGSSRPTIKQLQQR 124
           VR+ALL KQI SL NILVSM+KTLE+FHC+V SLEK+H +GRQLVKG SSR T+KQLQQR
Sbjct: 61  VRDALLEKQIGSLNNILVSMRKTLEEFHCIVASLEKLHCDGRQLVKGSSSRTTMKQLQQR 120

Query: 125 VGIKPTLNDCLDGLLFLHEIHNSEY 149
           VG+KP L DCLDGLLFLHEI+ SEY
Sbjct: 121 VGVKPRLIDCLDGLLFLHEIYYSEY 145


>Medtr1g103240.3 | PPR superfamily protein | HC |
           chr1:46711858-46709913 | 20130731
          Length = 144

 Score =  234 bits (597), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 113/144 (78%), Positives = 130/144 (90%)

Query: 5   MEAMVKKFQSKFRKVREEMNQWNELQSCLISQFRNASYIVERLEVLQNSHNYGVLKCVSG 64
           ME MVKKFQSKFRKV+EEMN+W+ELQSCLISQFRNAS+I++RL+VLQ S+NYG L CVSG
Sbjct: 1   MEVMVKKFQSKFRKVKEEMNRWDELQSCLISQFRNASHILDRLQVLQMSNNYGTLNCVSG 60

Query: 65  VREALLAKQIESLVNILVSMKKTLEDFHCVVLSLEKIHREGRQLVKGGSSRPTIKQLQQR 124
           VR+ALL KQI SL NILVSM+KTLE+FHC+V SLEK+H +GRQLVKG SSR T+KQLQQR
Sbjct: 61  VRDALLEKQIGSLNNILVSMRKTLEEFHCIVASLEKLHCDGRQLVKGSSSRTTMKQLQQR 120

Query: 125 VGIKPTLNDCLDGLLFLHEIHNSE 148
           VG+KP L DCLDGLLFLHEI+ SE
Sbjct: 121 VGVKPRLIDCLDGLLFLHEIYYSE 144


>Medtr1g103240.7 | PPR superfamily protein | HC |
           chr1:46711593-46708329 | 20130731
          Length = 151

 Score =  212 bits (539), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 105/149 (70%), Positives = 117/149 (78%)

Query: 53  SHNYGVLKCVSGVREALLAKQIESLVNILVSMKKTLEDFHCVVLSLEKIHREGRQLVKGG 112
           S+NYG L CVSGVR+ALL KQI SL NILVSM+KTLE+FHC+V SLEK+H +GRQLVKG 
Sbjct: 2   SNNYGTLNCVSGVRDALLEKQIGSLNNILVSMRKTLEEFHCIVASLEKLHCDGRQLVKGS 61

Query: 113 SSRPTIKQLQQRVGIKPTLNDCLDGLLFLHEIHNSEYXXXXXXXXXXXXXXXXPSASDLG 172
           SSR T+KQLQQRVG+KP L DCLDGLLFLHEI+ SEY                PSA DLG
Sbjct: 62  SSRTTMKQLQQRVGVKPRLIDCLDGLLFLHEIYYSEYLLKSSVVSVLSAMAIMPSACDLG 121

Query: 173 ALQQLLVDQPNLLTEEVQFVFDVIFAEEL 201
           ALQQLL D+PNLLTEEVQF+ D IFAEEL
Sbjct: 122 ALQQLLDDEPNLLTEEVQFLLDTIFAEEL 150