Miyakogusa Predicted Gene

Lj6g3v0452250.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0452250.1 Non Characterized Hit- tr|D7LDC3|D7LDC3_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,65.62,5e-18,coiled-coil,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY
NOT NAMED,NULL; seg,NULL; DUF399,Domain of unknow,CUFF.57920.1
         (312 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g071970.1 | DUF399 family protein | HC | chr3:32330169-323...   576   e-164

>Medtr3g071970.1 | DUF399 family protein | HC |
           chr3:32330169-32336859 | 20130731
          Length = 780

 Score =  576 bits (1484), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 274/312 (87%), Positives = 288/312 (92%)

Query: 1   MNSRVVYLGEAEQVPVRDDKELELEIVKNLQRRCVEKEKRLSLALEAFPSDLQEPLNQYL 60
           MN+RVVYLGEAEQVPVRDDKELELEIVKNL +RCVE +KRLSLA+EAFPS+LQEPLNQY+
Sbjct: 166 MNARVVYLGEAEQVPVRDDKELELEIVKNLHKRCVEVDKRLSLAIEAFPSNLQEPLNQYM 225

Query: 61  DKKIDGETLKTYTGHWPPERWQEYEPILSYCLENGIRLVACGTPLKILRTVQAEGIRGLT 120
           DKK+DGETLK+YT HWPPERWQEYEPILSYC ENGIRLVACGTPLKILRTVQAEGI GLT
Sbjct: 226 DKKMDGETLKSYTTHWPPERWQEYEPILSYCRENGIRLVACGTPLKILRTVQAEGISGLT 285

Query: 121 KAERKLYAPPAXXXXXXXXXXXXRRSLLDSTPNLSFPFGPSSYLSAQARVVDEYTMSQII 180
           KAERKLYAPPA            RR   DSTPNLSFPFGPSSYLSAQARVVDEYTMSQ I
Sbjct: 286 KAERKLYAPPAGSGFISGFSSMSRRYSADSTPNLSFPFGPSSYLSAQARVVDEYTMSQTI 345

Query: 181 LQNVLDGGANGMLLVVTGASHVTYGSRGTGVPARISRKIQKKNQVVILLDPERQFIRREG 240
           LQN+LDGGA GML+VVTGASHVTYG+RGTGVPARISRK+QKKNQVVILLDPERQFIR EG
Sbjct: 346 LQNMLDGGATGMLIVVTGASHVTYGARGTGVPARISRKLQKKNQVVILLDPERQFIRSEG 405

Query: 241 EVPVADFLWYSAARPCNRNCFDRAEIARVMNAAGQRRDALPQDLQKGIDLGLVSPEVLQN 300
           EVPVADFLWYSAARPC+RNCFDR EIARVMNAAGQRRDALPQDLQKGIDLGLVSPEVLQN
Sbjct: 406 EVPVADFLWYSAARPCSRNCFDRVEIARVMNAAGQRRDALPQDLQKGIDLGLVSPEVLQN 465

Query: 301 FFDLEKYPLISE 312
           FFDLEKYPL+SE
Sbjct: 466 FFDLEKYPLLSE 477