Miyakogusa Predicted Gene
- Lj6g3v0435070.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v0435070.1 tr|Q5YJP8|Q5YJP8_HYAOR Pentatricopeptide repeat
protein-like protein (Fragment) OS=Hyacinthus
orient,40.2,5e-16,PPR_2,Pentatricopeptide repeat; seg,NULL; FAMILY NOT
NAMED,NULL; PPR: pentatricopeptide repeat domai,CUFF.57841.1
(189 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g067670.1 | PPR containing plant-like protein | HC | chr3:... 279 1e-75
Medtr3g067670.2 | PPR containing plant-like protein | HC | chr3:... 279 1e-75
Medtr8g072150.1 | PPR containing plant-like protein | HC | chr8:... 124 6e-29
Medtr1g011520.1 | PPR containing plant-like protein | HC | chr1:... 60 1e-09
Medtr3g088505.3 | PPR containing plant-like protein | HC | chr3:... 57 7e-09
Medtr3g088505.1 | PPR containing plant-like protein | HC | chr3:... 57 7e-09
Medtr3g088505.2 | PPR containing plant-like protein | HC | chr3:... 57 7e-09
Medtr3g088505.4 | PPR containing plant-like protein | HC | chr3:... 57 7e-09
Medtr5g090210.1 | PPR containing plant-like protein | HC | chr5:... 56 2e-08
Medtr8g098755.1 | PPR containing plant-like protein | HC | chr8:... 55 3e-08
Medtr1g086500.1 | PPR containing plant-like protein | HC | chr1:... 55 5e-08
Medtr7g060720.1 | PPR containing plant-like protein, putative | ... 54 8e-08
Medtr5g089850.1 | PPR containing protein | HC | chr5:39081850-39... 54 9e-08
Medtr2g102210.1 | PPR containing plant-like protein | HC | chr2:... 54 1e-07
Medtr3g078580.1 | PPR containing plant-like protein | HC | chr3:... 54 1e-07
Medtr8g039270.1 | PPR containing plant-like protein | HC | chr8:... 54 1e-07
Medtr2g103550.2 | PPR containing plant-like protein | HC | chr2:... 53 2e-07
Medtr2g103550.1 | PPR containing plant-like protein | HC | chr2:... 53 2e-07
Medtr4g021220.1 | PPR containing plant-like protein | HC | chr4:... 52 3e-07
Medtr2g036560.1 | PPR containing plant-like protein | HC | chr2:... 52 4e-07
Medtr8g070050.1 | pentatricopeptide (PPR) repeat protein | HC | ... 52 5e-07
Medtr1g108270.1 | PPR containing plant-like protein | HC | chr1:... 51 5e-07
Medtr5g024320.1 | PPR containing plant-like protein | HC | chr5:... 51 8e-07
Medtr4g108060.1 | PPR containing plant-like protein | HC | chr4:... 51 8e-07
Medtr4g108060.2 | PPR containing plant-like protein | HC | chr4:... 51 8e-07
Medtr1g100593.1 | PPR containing plant-like protein | HC | chr1:... 50 1e-06
Medtr1g100593.2 | PPR containing plant-like protein | HC | chr1:... 50 1e-06
Medtr2g016740.1 | PPR containing plant-like protein | HC | chr2:... 50 2e-06
Medtr2g437460.1 | pentatricopeptide (PPR) repeat protein | HC | ... 50 2e-06
Medtr2g026645.1 | pentatricopeptide (PPR) repeat protein | HC | ... 49 2e-06
Medtr8g070060.1 | pentatricopeptide (PPR) repeat protein | HC | ... 49 3e-06
Medtr3g045420.1 | PPR containing plant-like protein | HC | chr3:... 49 3e-06
Medtr2g035450.1 | PPR containing plant-like protein | HC | chr2:... 49 3e-06
Medtr3g114700.1 | PPR containing plant-like protein | HC | chr3:... 48 5e-06
Medtr6g079440.1 | RNA processing factor 2, putative | HC | chr6:... 47 8e-06
>Medtr3g067670.1 | PPR containing plant-like protein | HC |
chr3:30265173-30262608 | 20130731
Length = 478
Score = 279 bits (713), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 133/187 (71%), Positives = 153/187 (81%), Gaps = 1/187 (0%)
Query: 2 AEFFWEVMLGRKTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLM 61
AEFFWEVM+G KT LQP T+MYNSM+ALY YH D++ A KM+D MV +GAFPDSLTYNL+
Sbjct: 291 AEFFWEVMMG-KTKLQPMTAMYNSMIALYCYHGDIDAATKMLDGMVCKGAFPDSLTYNLL 349
Query: 62 FRFLIKGRKLRDASRVFSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWKCEVEHYR 121
FRFL+KGRKLRDA+RVF EMVKNECVPDQ NCDAA+R+YLDN D MA+KVWKC VE+YR
Sbjct: 350 FRFLVKGRKLRDATRVFVEMVKNECVPDQLNCDAAVRVYLDNGDPVMAIKVWKCLVENYR 409
Query: 122 RDLEDTANXXXXXXXXXXXXPEAVKYAEDMIGRGIKLTSSTLSKLKHRLVKGRKEFLYEE 181
DLE TAN PEAVKYAE +IGRGIKLTSSTLSKL+ LVK RKEF+Y+E
Sbjct: 410 EDLEGTANLLVVGLRDNDRVPEAVKYAEHIIGRGIKLTSSTLSKLRQSLVKDRKEFVYDE 469
Query: 182 LLRKWKS 188
L+ KWK+
Sbjct: 470 LIAKWKA 476
>Medtr3g067670.2 | PPR containing plant-like protein | HC |
chr3:30265171-30262608 | 20130731
Length = 478
Score = 279 bits (713), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 133/187 (71%), Positives = 153/187 (81%), Gaps = 1/187 (0%)
Query: 2 AEFFWEVMLGRKTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLM 61
AEFFWEVM+G KT LQP T+MYNSM+ALY YH D++ A KM+D MV +GAFPDSLTYNL+
Sbjct: 291 AEFFWEVMMG-KTKLQPMTAMYNSMIALYCYHGDIDAATKMLDGMVCKGAFPDSLTYNLL 349
Query: 62 FRFLIKGRKLRDASRVFSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWKCEVEHYR 121
FRFL+KGRKLRDA+RVF EMVKNECVPDQ NCDAA+R+YLDN D MA+KVWKC VE+YR
Sbjct: 350 FRFLVKGRKLRDATRVFVEMVKNECVPDQLNCDAAVRVYLDNGDPVMAIKVWKCLVENYR 409
Query: 122 RDLEDTANXXXXXXXXXXXXPEAVKYAEDMIGRGIKLTSSTLSKLKHRLVKGRKEFLYEE 181
DLE TAN PEAVKYAE +IGRGIKLTSSTLSKL+ LVK RKEF+Y+E
Sbjct: 410 EDLEGTANLLVVGLRDNDRVPEAVKYAEHIIGRGIKLTSSTLSKLRQSLVKDRKEFVYDE 469
Query: 182 LLRKWKS 188
L+ KWK+
Sbjct: 470 LIAKWKA 476
>Medtr8g072150.1 | PPR containing plant-like protein | HC |
chr8:30459094-30456922 | 20130731
Length = 506
Score = 124 bits (311), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 109/189 (57%), Gaps = 6/189 (3%)
Query: 5 FWEVMLGRKTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRF 64
W+VM+ + L P MYN+M+ L +++++ A +++D+MV GAFPDSLTYN++F
Sbjct: 317 LWDVMV--VSGLLPNLIMYNAMIGLLCNNDEIDHAFRLLDEMVLHGAFPDSLTYNMIFEC 374
Query: 65 LIKGRKLRDASRVFSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWKCEVEHYRRDL 124
L+K +K+R+ R F+EM+KNE +P NC AI + + D A+++W VE R L
Sbjct: 375 LVKNKKVRETERFFAEMIKNEWLPTTSNCAVAIEMLFNCDDPDAALEIWSYMVETRVRVL 434
Query: 125 EDTANXXXXXXXXXXXXPEAVKYAEDMIGRGIKLTSSTLSKLKHRLVKGRKEFL----YE 180
+ +AN E ++AE+M+ + I + ST++KLK K + ++
Sbjct: 435 DVSANMVLIGLCKLKRLSEVRRFAEEMLDKRISIYDSTMNKLKEAFYKESRSSSARDKFD 494
Query: 181 ELLRKWKSH 189
+ R+WK+H
Sbjct: 495 AIYRRWKAH 503
>Medtr1g011520.1 | PPR containing plant-like protein | HC |
chr1:2060030-2064273 | 20130731
Length = 587
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 4/167 (2%)
Query: 9 MLGRKTTLQ--PTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLI 66
M+ R LQ PT S YNS++ + D+E A K++ M+ RG P TYN FR+
Sbjct: 346 MMERFHVLQIGPTLSTYNSLVKGFCKAGDIEGASKILKKMISRGFLPIPTTYNYFFRYFS 405
Query: 67 KGRKLRDASRVFSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWKCEVEHYRRDLE- 125
+ K+ + ++++M+++ PD+ +++ + +A++V E+ H D++
Sbjct: 406 RCGKVDEGMNLYTKMIESGHNPDRLTYHLVLKMLCEEEKLELAVQV-SMEMRHKGYDMDL 464
Query: 126 DTANXXXXXXXXXXXXPEAVKYAEDMIGRGIKLTSSTLSKLKHRLVK 172
T+ EA EDMI RGI T KL L K
Sbjct: 465 ATSTMLTHLLCKMHKLEEAFAEFEDMIRRGIIPQYLTFQKLNVELKK 511
>Medtr3g088505.3 | PPR containing plant-like protein | HC |
chr3:40228600-40232128 | 20130731
Length = 480
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 83/175 (47%), Gaps = 7/175 (4%)
Query: 13 KTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLR 72
K + +YN+++ + N L+ +++ +M G P+S T N++ LI +
Sbjct: 298 KNGIAADVVVYNALIGAFCKANKLKNVHRVLKEMESNGIAPNSRTCNVIMSSLISQGETD 357
Query: 73 DASRVFSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWK-CEVEHYRRDLEDTANXX 131
A VF M+K C PD I+++ + + MA+K+WK + + + L T +
Sbjct: 358 KAFSVFRRMIK-LCEPDADTYTMLIKMFCERNEVDMALKIWKYMKSKQFVPSLH-TFSVL 415
Query: 132 XXXXXXXXXXPEAVKYAEDMIGRGIKLTSSTLSKLKHRLVK-GRKE---FLYEEL 182
+A E+MI +GI+ + T KL+ L+K GR + FL+E++
Sbjct: 416 INGLCAKGNAMKACILLEEMIEKGIRPSRITFGKLRQLLIKEGRDDVLKFLHEKI 470
>Medtr3g088505.1 | PPR containing plant-like protein | HC |
chr3:40228600-40232138 | 20130731
Length = 480
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 83/175 (47%), Gaps = 7/175 (4%)
Query: 13 KTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLR 72
K + +YN+++ + N L+ +++ +M G P+S T N++ LI +
Sbjct: 298 KNGIAADVVVYNALIGAFCKANKLKNVHRVLKEMESNGIAPNSRTCNVIMSSLISQGETD 357
Query: 73 DASRVFSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWK-CEVEHYRRDLEDTANXX 131
A VF M+K C PD I+++ + + MA+K+WK + + + L T +
Sbjct: 358 KAFSVFRRMIK-LCEPDADTYTMLIKMFCERNEVDMALKIWKYMKSKQFVPSLH-TFSVL 415
Query: 132 XXXXXXXXXXPEAVKYAEDMIGRGIKLTSSTLSKLKHRLVK-GRKE---FLYEEL 182
+A E+MI +GI+ + T KL+ L+K GR + FL+E++
Sbjct: 416 INGLCAKGNAMKACILLEEMIEKGIRPSRITFGKLRQLLIKEGRDDVLKFLHEKI 470
>Medtr3g088505.2 | PPR containing plant-like protein | HC |
chr3:40228600-40232140 | 20130731
Length = 480
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 83/175 (47%), Gaps = 7/175 (4%)
Query: 13 KTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLR 72
K + +YN+++ + N L+ +++ +M G P+S T N++ LI +
Sbjct: 298 KNGIAADVVVYNALIGAFCKANKLKNVHRVLKEMESNGIAPNSRTCNVIMSSLISQGETD 357
Query: 73 DASRVFSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWK-CEVEHYRRDLEDTANXX 131
A VF M+K C PD I+++ + + MA+K+WK + + + L T +
Sbjct: 358 KAFSVFRRMIK-LCEPDADTYTMLIKMFCERNEVDMALKIWKYMKSKQFVPSLH-TFSVL 415
Query: 132 XXXXXXXXXXPEAVKYAEDMIGRGIKLTSSTLSKLKHRLVK-GRKE---FLYEEL 182
+A E+MI +GI+ + T KL+ L+K GR + FL+E++
Sbjct: 416 INGLCAKGNAMKACILLEEMIEKGIRPSRITFGKLRQLLIKEGRDDVLKFLHEKI 470
>Medtr3g088505.4 | PPR containing plant-like protein | HC |
chr3:40228600-40233968 | 20130731
Length = 480
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 83/175 (47%), Gaps = 7/175 (4%)
Query: 13 KTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLR 72
K + +YN+++ + N L+ +++ +M G P+S T N++ LI +
Sbjct: 298 KNGIAADVVVYNALIGAFCKANKLKNVHRVLKEMESNGIAPNSRTCNVIMSSLISQGETD 357
Query: 73 DASRVFSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWK-CEVEHYRRDLEDTANXX 131
A VF M+K C PD I+++ + + MA+K+WK + + + L T +
Sbjct: 358 KAFSVFRRMIK-LCEPDADTYTMLIKMFCERNEVDMALKIWKYMKSKQFVPSLH-TFSVL 415
Query: 132 XXXXXXXXXXPEAVKYAEDMIGRGIKLTSSTLSKLKHRLVK-GRKE---FLYEEL 182
+A E+MI +GI+ + T KL+ L+K GR + FL+E++
Sbjct: 416 INGLCAKGNAMKACILLEEMIEKGIRPSRITFGKLRQLLIKEGRDDVLKFLHEKI 470
>Medtr5g090210.1 | PPR containing plant-like protein | HC |
chr5:39298399-39301458 | 20130731
Length = 730
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 12 RKTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKL 71
+ L P T +Y ++ Y ++D+ A KM ++MV RG D +TYN + L +G+ L
Sbjct: 405 KGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKML 464
Query: 72 RDASRVFSEMVKNECVPD 89
DA +F EMV+ PD
Sbjct: 465 DDADELFKEMVERGVFPD 482
>Medtr8g098755.1 | PPR containing plant-like protein | HC |
chr8:41238399-41236005 | 20130731
Length = 671
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 14 TTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLRD 73
+ + P T +YN ++ +ND+E A +MDDM +G P++ TYN +F+ + R L
Sbjct: 555 SMVPPNTVIYNILIDALCKNNDVERAVSLMDDMKVKGVQPNTTTYNAIFKGVQDKRMLHK 614
Query: 74 ASRVFSEMVKNECVPD 89
A + MV++ C PD
Sbjct: 615 AFELMDRMVEDACNPD 630
>Medtr1g086500.1 | PPR containing plant-like protein | HC |
chr1:38701697-38699329 | 20130731
Length = 518
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 51/101 (50%)
Query: 18 PTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLRDASRV 77
P YN+ + Y L A +++D+MV +G P++ TYNL FR L+ + +
Sbjct: 299 PDVPAYNAAIRNYCIAKRLGIAFELVDEMVNKGLSPNATTYNLFFRVFYWSNDLQSSWNL 358
Query: 78 FSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWKCEVE 118
+ M+ C+P +C IR++ + MA+++W VE
Sbjct: 359 YKRMMGEGCLPYTQSCMFLIRLFKRHEKMEMALQLWGEMVE 399
>Medtr7g060720.1 | PPR containing plant-like protein, putative | HC
| chr7:21955726-21958466 | 20130731
Length = 535
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 41/68 (60%)
Query: 23 YNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLRDASRVFSEMV 82
YN+++A +L A ++ DDMV +G P++ TYN++ + K ++ RV EM+
Sbjct: 404 YNTLIAGLCEGGELCEAARLWDDMVEKGVAPNAFTYNMLIKGFCKVGNAKEGIRVLEEML 463
Query: 83 KNECVPDQ 90
+N C+P++
Sbjct: 464 ENRCLPNK 471
>Medtr5g089850.1 | PPR containing protein | HC |
chr5:39081850-39080081 | 20130731
Length = 502
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 5 FWEVMLGRKTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRF 64
++E M G L P T +Y ++ Y +ND+ A K+ ++MV R D +TYN +
Sbjct: 233 YFEKMKG--VGLVPDTVIYTILINGYCRNNDVSGALKVRNEMVERSCVMDVVTYNTLLNG 290
Query: 65 LIKGRKLRDASRVFSEMVKNECVPD 89
L +G+ L DA +F EMV+ PD
Sbjct: 291 LCRGKMLDDADELFKEMVERGVFPD 315
>Medtr2g102210.1 | PPR containing plant-like protein | HC |
chr2:43984589-43987676 | 20130731
Length = 639
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 12 RKTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKL 71
++ LQPT +Y +++ +YF +E A ++ +M R P TY + R L K ++
Sbjct: 258 KENGLQPTAKIYTTLMGIYFKLGKVEEALNLVHEMRMRRCVPTVYTYTELIRGLGKSGRV 317
Query: 72 RDASRVFSEMVKNECVPD 89
DA V+ M+K+ C PD
Sbjct: 318 EDAYGVYKNMLKDGCKPD 335
>Medtr3g078580.1 | PPR containing plant-like protein | HC |
chr3:35401646-35399196 | 20130731
Length = 490
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 78/180 (43%), Gaps = 4/180 (2%)
Query: 13 KTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLR 72
K L P+ + YN+++ + + ++ A + D+MV +G P+ TYN++ R L ++
Sbjct: 302 KEGLVPSVATYNALIQVLCKKDSVQNALLVFDEMVGKGCVPNLTTYNVVIRGLCHSGEIE 361
Query: 73 DASRVFSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWKCEVEHYRRDLEDTANXXX 132
M +N C+P + IR Y D + +++++ DT N
Sbjct: 362 RGVEFMKRMEENGCMPSVQTYNVVIRYYCDEGELEKGLELFEKMGNGTCLPNLDTYNILI 421
Query: 133 XXXXXXXXXPEAV---KYAEDMIGRGIKLTSSTLSKLKHRLV-KGRKEFLYEELLRKWKS 188
+ V K +M+GRG T +++ + LV G +EF E L + +S
Sbjct: 422 SAMFVRKKSEDLVLAGKLLIEMVGRGFLPRKFTFNRVLNGLVLTGNREFANEILRMQSRS 481
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 3 EFFWEVMLGRKTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMF 62
EFF E M RK + T Y +M+ + +++ ++++ D MV G P TYN +
Sbjct: 260 EFFLE-MKKRKCEIDVVT--YTTMVHGFGVAGEVKRSKRVFDAMVKEGLVPSVATYNALI 316
Query: 63 RFLIKGRKLRDASRVFSEMVKNECVPDQPNCDAAIR 98
+ L K +++A VF EMV CVP+ + IR
Sbjct: 317 QVLCKKDSVQNALLVFDEMVGKGCVPNLTTYNVVIR 352
>Medtr8g039270.1 | PPR containing plant-like protein | HC |
chr8:14611328-14608322 | 20130731
Length = 731
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%)
Query: 9 MLGRKTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKG 68
M G P Y +++ Y N+ E A ++ + MV +G +P +TYN + R L
Sbjct: 292 MFGEIKDAIPNHVTYTTLIDGYCKANEFEEALRLREMMVAKGLYPGVVTYNSILRKLCSD 351
Query: 69 RKLRDASRVFSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAMK 111
++RDA+++ EM + + D C+ I Y D A+K
Sbjct: 352 GRIRDANKLLHEMSERKVQADSVTCNTLINAYCKIGDLNSALK 394
>Medtr2g103550.2 | PPR containing plant-like protein | HC |
chr2:44583250-44580161 | 20130731
Length = 439
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 52/100 (52%)
Query: 16 LQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLRDAS 75
++P Y ++++ ++ H E + + MV +G P+ T+N+ +FL+ R++ DA+
Sbjct: 247 VKPDVVTYTTLISAFYDHKRWEIGNGLWNQMVLKGVMPNLHTFNVRIQFLVTVRRVWDAN 306
Query: 76 RVFSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWKC 115
++ + M +N PD+ I+ + MAM+V+
Sbjct: 307 KLMALMQRNGVTPDEVTLVLVIKGFFRAGYPEMAMRVYSA 346
>Medtr2g103550.1 | PPR containing plant-like protein | HC |
chr2:44583249-44581163 | 20130731
Length = 439
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 52/100 (52%)
Query: 16 LQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLRDAS 75
++P Y ++++ ++ H E + + MV +G P+ T+N+ +FL+ R++ DA+
Sbjct: 247 VKPDVVTYTTLISAFYDHKRWEIGNGLWNQMVLKGVMPNLHTFNVRIQFLVTVRRVWDAN 306
Query: 76 RVFSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWKC 115
++ + M +N PD+ I+ + MAM+V+
Sbjct: 307 KLMALMQRNGVTPDEVTLVLVIKGFFRAGYPEMAMRVYSA 346
>Medtr4g021220.1 | PPR containing plant-like protein | HC |
chr4:6857254-6858736 | 20130731
Length = 449
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%)
Query: 16 LQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLRDAS 75
++P T MYN ++ L D+E K+M DM G PD +TY M L +L +A
Sbjct: 136 MKPDTVMYNVVIKLVCKQGDVEMGEKLMKDMSLNGICPDLITYMTMIEGLCSAGRLEEAY 195
Query: 76 RVFSEMVKNECVPDQ 90
+ M N C P+
Sbjct: 196 EMVKVMRGNGCSPNS 210
>Medtr2g036560.1 | PPR containing plant-like protein | HC |
chr2:15824637-15820871 | 20130731
Length = 849
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 50/106 (47%)
Query: 14 TTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLRD 73
+ LQP YNS++ LY D A +M+ D+ G PD ++YN + + K +++
Sbjct: 687 SGLQPNLVTYNSLIDLYARVGDCWKAEEMLKDIQNSGISPDVVSYNTVIKGFCKKGLVQE 746
Query: 74 ASRVFSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWKCEVEH 119
A R+ SEM N P + + Y N A +V + +EH
Sbjct: 747 AIRILSEMTANGVQPCPITFNTFMSCYAGNGLFAEADEVIRYMIEH 792
>Medtr8g070050.1 | pentatricopeptide (PPR) repeat protein | HC |
chr8:29734562-29735236 | 20130731
Length = 224
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%)
Query: 16 LQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLRDAS 75
+ P YN+++ ++ N +E A+K+ D M G PD+ TY+ L + +L +A
Sbjct: 111 ISPDIYSYNALIQIFCRMNKVEKAKKLFDSMSKSGFNPDNYTYSAFIAALSESGRLEEAK 170
Query: 76 RVFSEMVKNECVPDQPNCDAAIR 98
++F + N C PD C+ I+
Sbjct: 171 KMFYSIEANGCSPDSYVCNLVIK 193
>Medtr1g108270.1 | PPR containing plant-like protein | HC |
chr1:48926827-48924799 | 20130731
Length = 509
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 76/175 (43%), Gaps = 4/175 (2%)
Query: 3 EFFWEVMLGRKTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMF 62
EFF + + + P YN++++ Y + ++ A +++ +M G P++ TY+++
Sbjct: 318 EFFEK---SKASGFPPEAPTYNAVVSAYCWSMRIDDAYRIVGEMKELGIGPNARTYDIIL 374
Query: 63 RFLIKGRKLRDASRVFSEM-VKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWKCEVEHYR 121
LIKG + ++A VF M + C P +R++ + MAM VW +
Sbjct: 375 VHLIKGGRTKEAYSVFQRMSSETGCEPSVSTYAIMVRMFCNENQLDMAMVVWNEMKDKGI 434
Query: 122 RDLEDTANXXXXXXXXXXXXPEAVKYAEDMIGRGIKLTSSTLSKLKHRLVKGRKE 176
+ +A +Y + M+ GI+ T++ S K L+ E
Sbjct: 435 LPGIHMFSTLIISLCHENKLDDACRYFQQMLDVGIRPTANMFSAFKRALMAAGME 489
>Medtr5g024320.1 | PPR containing plant-like protein | HC |
chr5:9792166-9790250 | 20130731
Length = 620
Score = 50.8 bits (120), Expect = 8e-07, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 42/73 (57%)
Query: 18 PTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLRDASRV 77
P S +N+++ + +E+A K M+D+ RG P++ TY+ + L + ++ A +V
Sbjct: 521 PIASTFNAIITEFCEQGKIESALKFMEDITARGCVPNTETYSPLIDVLCRKGDIQKALQV 580
Query: 78 FSEMVKNECVPDQ 90
F EMV+ +PDQ
Sbjct: 581 FLEMVEKGILPDQ 593
>Medtr4g108060.1 | PPR containing plant-like protein | HC |
chr4:44791239-44788813 | 20130731
Length = 583
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%)
Query: 12 RKTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKL 71
+K L+P YNS++ + LE A + D MV G P+ +TYN + K + +
Sbjct: 300 QKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMM 359
Query: 72 RDASRVFSEMVKNECVPDQPNCDAAIRIY 100
++A++VF ++ K E VP+ + I Y
Sbjct: 360 KEATKVFDDVSKQELVPNVITFNTMIDAY 388
>Medtr4g108060.2 | PPR containing plant-like protein | HC |
chr4:44790940-44788813 | 20130731
Length = 449
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 12 RKTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKL 71
+K L+P YNS++ + LE A + D MV G P+ +TYN + K + +
Sbjct: 166 QKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMM 225
Query: 72 RDASRVFSEMVKNECVPD 89
++A++VF ++ K E VP+
Sbjct: 226 KEATKVFDDVSKQELVPN 243
>Medtr1g100593.1 | PPR containing plant-like protein | HC |
chr1:45524249-45521592 | 20130731
Length = 501
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 2 AEFFWEVMLGRKTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLM 61
++F+ M +K P Y M+ Y +LE A++M ++M+ + P+ TYN M
Sbjct: 371 CQYFFNEM--KKNGCMPDVVAYTVMITGYVVARELEKAQEMFEEMLSKELVPNVFTYNSM 428
Query: 62 FRFLIKGRKLRDASRVFSEMVKNECVPDQ 90
R L K +A +F EM + C P+
Sbjct: 429 IRGLCMAGKFDEACSMFKEMERKGCSPNS 457
>Medtr1g100593.2 | PPR containing plant-like protein | HC |
chr1:45524249-45520736 | 20130731
Length = 501
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 2 AEFFWEVMLGRKTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLM 61
++F+ M +K P Y M+ Y +LE A++M ++M+ + P+ TYN M
Sbjct: 371 CQYFFNEM--KKNGCMPDVVAYTVMITGYVVARELEKAQEMFEEMLSKELVPNVFTYNSM 428
Query: 62 FRFLIKGRKLRDASRVFSEMVKNECVPDQ 90
R L K +A +F EM + C P+
Sbjct: 429 IRGLCMAGKFDEACSMFKEMERKGCSPNS 457
>Medtr2g016740.1 | PPR containing plant-like protein | HC |
chr2:5175787-5177502 | 20130731
Length = 489
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 69/167 (41%), Gaps = 2/167 (1%)
Query: 20 TSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLRDASRVFS 79
++Y ++ + ++ ++ +M RG PD TYN + + + DA RV+
Sbjct: 290 VALYTCLITGFGRQKKMDVVYDLLKEMRERGCPPDGRTYNALIKLMTSQHMPDDAVRVYK 349
Query: 80 EMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWKCEVEHYRRDLEDTANXXXXXXXXXX 139
+M+++ P ++ Y ++ M VW E+ H +D +
Sbjct: 350 KMIQSGVEPTIHTYTMIMKSYFVTKNYEMGRSVWD-EMRHKGCCPDDNSYTVFIGGLIRQ 408
Query: 140 XXP-EAVKYAEDMIGRGIKLTSSTLSKLKHRLVKGRKEFLYEELLRK 185
P EA KY ++M+ +G+K +K K + EEL RK
Sbjct: 409 GRPDEACKYIDEMMQKGMKAPQLDYNKFGADFSKYGNPAILEELARK 455
>Medtr2g437460.1 | pentatricopeptide (PPR) repeat protein | HC |
chr2:14710511-14713103 | 20130731
Length = 745
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
Query: 1 MAEFFWEVMLGRKTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNL 60
MA+ + ML + ++PT YN +L F L+TA + DDM RG PD +TYN
Sbjct: 222 MAKRVYNAML--REGIEPTRHTYNILLWGMFLSLKLDTAVRFYDDMKSRGIEPDVVTYNT 279
Query: 61 MFRFLIKGRKLRDASRVFSEMVKNECVPDQPNCDAAIRIYLD 102
+ + +K+ +A +F EM +P+ + ++ ++D
Sbjct: 280 LIHGFFRFKKVDEAESLFVEMKGKNLMPNVISYTTMLKGFVD 321
>Medtr2g026645.1 | pentatricopeptide (PPR) repeat protein | HC |
chr2:9674893-9670547 | 20130731
Length = 687
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 22 MYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLRDASRVFSEM 81
+YN L +Y ND + A+K+ D+M+ RG PD++T+ M A F +M
Sbjct: 149 LYNVTLKVYRKCNDFDGAQKVFDEMLQRGVKPDNITFTTMINCARMSALPDKAVEWFEKM 208
Query: 82 VKNECVPDQPNCDAAIRIYLDNRDAFMAMKVW-KCEVEHYRRDL 124
C PD C A + Y MA++++ + ++E + D+
Sbjct: 209 PGFGCEPDAITCSAMVCAYARTNHVDMALRLYDRAKIEKWPVDV 252
>Medtr8g070060.1 | pentatricopeptide (PPR) repeat protein | HC |
chr8:29740887-29742940 | 20130731
Length = 653
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%)
Query: 16 LQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLRDAS 75
+ P YN+++ ++ N +E A+K+ D M G PD+ TY+ L + +L +A
Sbjct: 552 ISPDIYSYNALIQIFCRMNKVEKAKKLFDSMSKSGFNPDNYTYSAFIAALSESGRLEEAK 611
Query: 76 RVFSEMVKNECVPDQ 90
++F M N C PD
Sbjct: 612 KMFYSMEANGCSPDS 626
>Medtr3g045420.1 | PPR containing plant-like protein | HC |
chr3:14773131-14777409 | 20130731
Length = 903
Score = 48.9 bits (115), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 13/103 (12%)
Query: 17 QPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLRDASR 76
+P Y +++ ++ L+ A M + M G PD+ TY++M L K L A R
Sbjct: 474 EPDRVTYCTLIDIHAKAGYLDVAMSMYERMQQVGLSPDTFTYSVMINCLGKSGNLAAADR 533
Query: 77 VFSEMVKNECVPD-------------QPNCDAAIRIYLDNRDA 106
+F EMV CVP+ N +AA+++Y D ++A
Sbjct: 534 LFGEMVDQGCVPNIVTYNIMIALQAKARNYEAALKLYRDMQNA 576
Score = 48.5 bits (114), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 37/74 (50%)
Query: 18 PTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLRDASRV 77
P YN M+AL + E A K+ DM G PD +TY+++ L L +A V
Sbjct: 545 PNIVTYNIMIALQAKARNYEAALKLYRDMQNAGFRPDKVTYSIVMEVLGHCGYLEEAEAV 604
Query: 78 FSEMVKNECVPDQP 91
F EM + VPD+P
Sbjct: 605 FVEMKQRNWVPDEP 618
>Medtr2g035450.1 | PPR containing plant-like protein | HC |
chr2:15110685-15106845 | 20130731
Length = 647
Score = 48.9 bits (115), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 38/72 (52%)
Query: 18 PTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLRDASRV 77
P +N +++ DL A K++D+M +G P+ +TYN + L KL A +
Sbjct: 243 PNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMSL 302
Query: 78 FSEMVKNECVPD 89
+ MV N+CVP+
Sbjct: 303 LNRMVANKCVPN 314
>Medtr3g114700.1 | PPR containing plant-like protein | HC |
chr3:53562677-53565345 | 20130731
Length = 530
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 55/95 (57%)
Query: 20 TSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLRDASRVFS 79
T YN ++ + +L+ A K++D MV +G P++ T+N +F + + + A R+++
Sbjct: 352 TISYNFLIESHCKDENLDEAVKVLDTMVKKGVAPNASTFNSIFGCIAELHDVNGAHRMYA 411
Query: 80 EMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWK 114
+M + +C+P+ + +R++ D++ M +K+ K
Sbjct: 412 KMKELKCMPNTLTYNILMRMFADSKSIDMVLKLKK 446
>Medtr6g079440.1 | RNA processing factor 2, putative | HC |
chr6:29951090-29949379 | 20130731
Length = 541
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 2 AEFFWEVMLGRKTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLM 61
A VM+ K ++P Y+S++ YF ++ A+ + + + RG P+ +YN+M
Sbjct: 283 ARHVLAVMI--KQRVEPDIVTYSSLMDGYFLVKEVNKAKHLFNTLPLRGVTPNVFSYNIM 340
Query: 62 FRFLIKGRKLRDASRVFSEMVKNECVPDQPNCDAAI 97
L K + + +A+ +F EM + PD + ++ I
Sbjct: 341 INGLCKNKMVNEAANLFKEMHSSNMTPDTVSYNSLI 376