Miyakogusa Predicted Gene

Lj6g3v0410450.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0410450.1 tr|I0Z3L3|I0Z3L3_9CHLO TPR-like protein
OS=Coccomyxa subellipsoidea C-169 PE=4 SV=1,48,1e-17,KINESIN LIGHT
CHAIN,NULL; Tetratricopeptide repeats,Tetratricopeptide repeat;
TPR_12,NULL; TPR-like,,CUFF.57790.1
         (234 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g065220.1 | TPR repeat protein | HC | chr3:29428230-294170...   344   4e-95

>Medtr3g065220.1 | TPR repeat protein | HC | chr3:29428230-29417062
           | 20130731
          Length = 536

 Score =  344 bits (883), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 159/231 (68%), Positives = 190/231 (82%), Gaps = 5/231 (2%)

Query: 3   LRVAAANLLKKFRFPSSRAFPASTVPTNSLPISFSGKVRLSHWYQTRAY----SCRDPCL 58
           LRVA +NLLKK RFPSS A  ++ V  NS PISFSGK R   WYQT  Y    + RDPCL
Sbjct: 4   LRVAVSNLLKKLRFPSSIAISSAIVTENSSPISFSGK-RFCQWYQTGQYGWRQNLRDPCL 62

Query: 59  WIVVSGYAAVTLGISASTVFAEDVSTETSIDNDSGDELNGFRKIEDGSVVSNTHTAKWRI 118
           WI++SG+  +T+GISA+T FAEDV+TETS  N + D+LNG RKIEDGSV SN HTAKWR+
Sbjct: 63  WILISGHVVLTMGISANTAFAEDVTTETSSGNSANDDLNGLRKIEDGSVASNIHTAKWRV 122

Query: 119 FTDKARDFFLQGKLDEAEKLFLSAVQEAKEGFGKQDPHVASACNNLAEFYRIRKEFDKAE 178
           FTDKAR+ F +GKLD+AE+LF++A++EAKEGFG+QDPHVAS+CNNLAE YR++K FDKAE
Sbjct: 123 FTDKARELFFEGKLDDAERLFVAAIKEAKEGFGEQDPHVASSCNNLAELYRVKKAFDKAE 182

Query: 179 PLYLEAINILEESFGPDDIRVGAAAHNLGQFYLGLRKLEKARLTYERALKV 229
           PLYLEAI ILEESFGPDD+RV  A HNLGQFY+G R LEKA ++YERALK+
Sbjct: 183 PLYLEAIKILEESFGPDDVRVAVAVHNLGQFYIGQRMLEKALVSYERALKI 233