Miyakogusa Predicted Gene

Lj6g3v0392210.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0392210.1 Non Characterized Hit- tr|B8A1Y8|B8A1Y8_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,57.14,6e-16,
,CUFF.57760.1
         (201 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g064600.1 | plant/F12P19-7 protein | HC | chr3:29111999-29...   335   2e-92

>Medtr3g064600.1 | plant/F12P19-7 protein | HC |
           chr3:29111999-29116457 | 20130731
          Length = 401

 Score =  335 bits (859), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 161/195 (82%), Positives = 177/195 (90%), Gaps = 4/195 (2%)

Query: 2   FNKSDVQKLAQFAAHFFTDLDTDQHPSCNFATFVPFAEDTPLQRAEWIKFMGAFANVEAR 61
            NKSD Q LAQF+AHFF D  TDQ P+CNFAT VPF+EDTPLQRAEWIKF+GAFANVE+R
Sbjct: 143 LNKSDYQMLAQFSAHFFGD--TDQQPACNFATSVPFSEDTPLQRAEWIKFIGAFANVESR 200

Query: 62  ANDVYSTVKQNYLCLAEIAKTRTSFKPTVAWMKYDTGVWSFTKDGYQLKYVEDAGGANLD 121
           AN VY+TVK+NYLCLAEIAK+RTSFKPTVAWMKY++GVWSFTK+ Y LKYVEDAGG  LD
Sbjct: 201 ANQVYTTVKENYLCLAEIAKSRTSFKPTVAWMKYNSGVWSFTKEAYYLKYVEDAGGEILD 260

Query: 122 DSMSKHTYNISDPDDLEELHAILCTVEVVIDETLTSDPVNYTLSTFIQNLNVEDRSCFSF 181
              +K+TYNISDPDDLEELHA+LCTVEVVIDETL  DPVNYT+STFIQNLNVEDRSCFSF
Sbjct: 261 --ANKNTYNISDPDDLEELHALLCTVEVVIDETLAYDPVNYTMSTFIQNLNVEDRSCFSF 318

Query: 182 LTNTSLWRYDKRIQN 196
           LTNTSLWRYDKRIQ+
Sbjct: 319 LTNTSLWRYDKRIQS 333