Miyakogusa Predicted Gene

Lj6g3v0392200.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0392200.1 tr|Q94A98|Q94A98_ARATH At1g65900/F12P19_7
OS=Arabidopsis thaliana GN=At1g65900 PE=2 SV=1,62.5,3e-18,
,CUFF.57759.1
         (83 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g064600.1 | plant/F12P19-7 protein | HC | chr3:29111999-29...   142   1e-34
Medtr3g073800.1 | transmembrane protein, putative | HC | chr3:33...   137   2e-33

>Medtr3g064600.1 | plant/F12P19-7 protein | HC |
          chr3:29111999-29116457 | 20130731
          Length = 401

 Score =  142 bits (357), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 68/83 (81%), Positives = 71/83 (85%), Gaps = 2/83 (2%)

Query: 1  MDSATCYCSWLQPFFLLALVWFFNCGGVQGATPAVKVGNLSKVEDAVNFHIYYGQTFKVI 60
          MDSA  +CSW Q  F LALVWFFNCG V G +  VKVGN SKVEDAVNFHIYYGQTFKVI
Sbjct: 1  MDSA--HCSWFQALFFLALVWFFNCGSVDGVSTTVKVGNFSKVEDAVNFHIYYGQTFKVI 58

Query: 61 KNAIDGQSYLLLQNNSRIASRTK 83
          KNA+DGQSYLLLQNNSRIASRTK
Sbjct: 59 KNAVDGQSYLLLQNNSRIASRTK 81


>Medtr3g073800.1 | transmembrane protein, putative | HC |
          chr3:33314362-33312766 | 20130731
          Length = 117

 Score =  137 bits (346), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 63/79 (79%), Positives = 68/79 (86%)

Query: 5  TCYCSWLQPFFLLALVWFFNCGGVQGATPAVKVGNLSKVEDAVNFHIYYGQTFKVIKNAI 64
          + +CSW Q  F LALVWFFNCG V G +  VKVGN SKVEDAVNFHIYYGQTF+VIKNA+
Sbjct: 3  STHCSWFQALFFLALVWFFNCGSVHGVSTTVKVGNFSKVEDAVNFHIYYGQTFRVIKNAV 62

Query: 65 DGQSYLLLQNNSRIASRTK 83
          DGQSYLLLQNNSRIASRTK
Sbjct: 63 DGQSYLLLQNNSRIASRTK 81