Miyakogusa Predicted Gene

Lj6g3v0389080.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0389080.1 Non Characterized Hit- tr|F6I4V8|F6I4V8_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,80.47,0,TRANSCRIPTION REGULATION,NULL; CDC68 RELATED,NULL;
seg,NULL,CUFF.57799.1
         (169 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g064470.1 | global transcription factor | HC | chr3:290461...   171   4e-43
Medtr6g009500.1 | global transcription factor | HC | chr6:282238...   148   3e-36

>Medtr3g064470.1 | global transcription factor | HC |
            chr3:29046156-29041073 | 20130731
          Length = 1066

 Score =  171 bits (432), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 94/163 (57%), Positives = 97/163 (59%)

Query: 1    MTIVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPKSF 60
            MTIVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDP+SF
Sbjct: 884  MTIVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQSF 943

Query: 61   IETGGWEFLNLEAXXXXXXXXXXXXKGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
            IE GGWEFLNLEA            KGY                                
Sbjct: 944  IEGGGWEFLNLEATDSESEGSEESDKGYEPSDVEPESDSEEEDSESASLVESEDDEEEED 1003

Query: 121  XXXXXXXXXXXXXXXXXXXASNADREKGHEYDSEEDRQRRKVK 163
                               ASNADREKG+E DSEEDR+RRK K
Sbjct: 1004 SEEDSEEEAGKTWEELEREASNADREKGNESDSEEDRKRRKAK 1046


>Medtr6g009500.1 | global transcription factor | HC |
           chr6:2822385-2827386 | 20130731
          Length = 1058

 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 70/88 (79%), Positives = 73/88 (82%)

Query: 1   MTIVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPKSF 60
           MTIVFKDFKR+  RIDSIPSTS+DGIKEWLDTTDIKYYESRLNLNWRQILKTITDDP+SF
Sbjct: 878 MTIVFKDFKRNFFRIDSIPSTSIDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQSF 937

Query: 61  IETGGWEFLNLEAXXXXXXXXXXXXKGY 88
           IE GGWEFLNLEA            KGY
Sbjct: 938 IEGGGWEFLNLEAADSESEGSEESDKGY 965