Miyakogusa Predicted Gene
- Lj6g3v0365870.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v0365870.1 Non Characterized Hit- tr|K3YW08|K3YW08_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si018454,35.22,5e-19,A_tha_TIGR01569: plant integral membrane
protein T,Uncharacterised protein family UPF0497,
trans-mem,CUFF.57734.1
(213 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g064310.1 | CASP POPTRDRAFT-like protein | HC | chr3:28945... 280 9e-76
Medtr5g076480.1 | CASP POPTRDRAFT-like protein | HC | chr5:32632... 249 2e-66
Medtr0160s0040.1 | CASP POPTRDRAFT-like protein | HC | scaffold0... 109 2e-24
Medtr2g026530.2 | CASP POPTRDRAFT-like protein | HC | chr2:95933... 84 7e-17
Medtr2g026530.1 | CASP POPTRDRAFT-like protein | HC | chr2:95933... 84 8e-17
Medtr0004s0210.1 | CASP POPTRDRAFT-like protein | HC | scaffold0... 63 2e-10
Medtr7g011090.1 | casparian strip membrane protein | HC | chr7:2... 61 1e-09
Medtr7g083120.1 | plant integral membrane protein | HC | chr7:31... 60 2e-09
Medtr0693s0030.1 | CASP POPTRDRAFT-like protein | HC | scaffold0... 59 3e-09
Medtr4g081880.1 | casparian strip membrane protein | HC | chr4:3... 56 3e-08
Medtr8g013900.1 | CASP-like protein | HC | chr8:4294762-4291273 ... 52 3e-07
Medtr1g058560.1 | casparian strip membrane protein | HC | chr1:2... 52 6e-07
Medtr7g108130.1 | plant integral membrane protein | HC | chr7:43... 50 2e-06
Medtr1g115285.1 | CASP-like protein | HC | chr1:51990203-5199161... 49 3e-06
Medtr2g086740.1 | plant integral membrane protein | HC | chr2:36... 49 3e-06
>Medtr3g064310.1 | CASP POPTRDRAFT-like protein | HC |
chr3:28945240-28941390 | 20130731
Length = 217
Score = 280 bits (715), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 139/190 (73%), Positives = 160/190 (84%), Gaps = 5/190 (2%)
Query: 5 TAVAAARSPMQLMMGTAASG---GEELEGNGATTLRSLETFLRLLPIGLCVSALVLMLKN 61
T V+A RSPMQ+MM AA+ GEELEGN + LR+ ETFLRLLPIGLCV+ALVLMLKN
Sbjct: 8 TVVSATRSPMQVMMAPAAAAAATGEELEGNTTSFLRTAETFLRLLPIGLCVAALVLMLKN 67
Query: 62 SQENDYGSVDYTDLGPFRYLVHANGICAGYSLLSAVFVAVPRPSPTMSRAWTFFLLDQVL 121
S+ENDYGSV Y DLG FRYLVHANGICAGYSLLSAV VA PR PT+ RAWTFF LDQVL
Sbjct: 68 SEENDYGSVSYNDLGAFRYLVHANGICAGYSLLSAVVVAAPR--PTLLRAWTFFFLDQVL 125
Query: 122 TYIILGAGAASTEVLYLMEKGDAGTTWSSACGSFGRFCNKLTATTAITFVAVLCYVLLSI 181
TYIIL AGA+S EV+YL E GD+ T W+SACGSFG+FC+K+TA+ AITFVA+ CYV+LS+
Sbjct: 126 TYIILSAGASSMEVVYLAENGDSATVWNSACGSFGQFCHKVTASVAITFVALFCYVILSL 185
Query: 182 ISSYKLFTKY 191
ISS+KLF+ Y
Sbjct: 186 ISSFKLFSNY 195
>Medtr5g076480.1 | CASP POPTRDRAFT-like protein | HC |
chr5:32632182-32630106 | 20130731
Length = 209
Score = 249 bits (635), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 128/192 (66%), Positives = 149/192 (77%), Gaps = 5/192 (2%)
Query: 1 MDKETAVA-AARSPMQLMMGTAASGGEELEGNGATTLRSLETFLRLLPIGLCVSALVLML 59
MDK V A RS ++ MG + EE EG A+ LR +ETFLRL PI LCV+AL++ML
Sbjct: 1 MDKGIGVELATRSSIE--MGNSVVD-EEFEGKEASLLRIVETFLRLFPICLCVTALIIML 57
Query: 60 KNSQENDYGSVDYTDLGPFRYLVHANGICAGYSLLSAVFVAVPRPSPTMSRAWTFFLLDQ 119
KNS+EN+YGSV Y+DLG FRYLVHANGICAGYSL SAV VAVPRPS TM +AW FFLLDQ
Sbjct: 58 KNSEENEYGSVAYSDLGAFRYLVHANGICAGYSLFSAVIVAVPRPS-TMPKAWAFFLLDQ 116
Query: 120 VLTYIILGAGAASTEVLYLMEKGDAGTTWSSACGSFGRFCNKLTATTAITFVAVLCYVLL 179
V TYIIL AGA TEVLYL E G WSSACGSFG FC+K+ A+ ITF+AV+CY+LL
Sbjct: 117 VQTYIILAAGAVLTEVLYLAEYGVPTAGWSSACGSFGSFCHKIKASLVITFIAVVCYILL 176
Query: 180 SIISSYKLFTKY 191
S+ISSY+LF+KY
Sbjct: 177 SLISSYRLFSKY 188
>Medtr0160s0040.1 | CASP POPTRDRAFT-like protein | HC |
scaffold0160:28011-30206 | 20130731
Length = 187
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 100/163 (61%), Gaps = 4/163 (2%)
Query: 31 NGATTLRSLETFLRLLPIGLCVSALVLMLKNSQEN-DYGSVDYTDLGPFRYLVHANGICA 89
N L+ L++ LRL + L ++ + + + N Q+N YG++ Y+D+ +Y++ + +CA
Sbjct: 14 NNLPMLKLLDSSLRLCSVPLSLATIWITVTNKQDNTSYGTLKYSDISGLKYMIFVSALCA 73
Query: 90 GYSLLSAVFVAVPRPSPTMSRAWTFFLLDQVLTYIILGAGAASTEVLYLMEKGDAGTTWS 149
GY++++AV V M++AW FF+ DQV+ Y+++ + AA+ E+ YL G +WS
Sbjct: 74 GYAIVAAVCSWVRY---LMTKAWIFFISDQVVAYLMVTSIAATMEIYYLAYNGAREDSWS 130
Query: 150 SACGSFGRFCNKLTATTAITFVAVLCYVLLSIISSYKLFTKYG 192
AC S+G+FC+K+ + + C+ +L+IIS+++ F+ +
Sbjct: 131 QACSSYGKFCSKVKLALILHMITFGCFFVLAIISAFRAFSVFD 173
>Medtr2g026530.2 | CASP POPTRDRAFT-like protein | HC |
chr2:9593399-9595933 | 20130731
Length = 181
Score = 84.3 bits (207), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 90/165 (54%), Gaps = 8/165 (4%)
Query: 36 LRSLETFLRLLPIGLCVSALVLMLKNSQENDYGSVD----YTDLGPFRYLVHANGICAGY 91
+R E LR + +GL V A+VL++ +SQ ++ ++ +TD+ +LV AN I AGY
Sbjct: 8 VRITELVLRFVNLGLGVLAVVLIVTDSQVREFFTIQKKAKFTDMKALVFLVVANAIAAGY 67
Query: 92 SLLSAV--FVAVPRPSPTMSR--AWTFFLLDQVLTYIILGAGAASTEVLYLMEKGDAGTT 147
SL+ + V++ + S ++ AW F DQV+ YI + A +A+ + + G
Sbjct: 68 SLIQGLRCVVSMIKGSVLFNKPLAWAIFSCDQVMAYITVAAVSAAAQSAVFAKMGQEQLQ 127
Query: 148 WSSACGSFGRFCNKLTATTAITFVAVLCYVLLSIISSYKLFTKYG 192
W C +G+FCN++ A F+ L V++S IS++ LF YG
Sbjct: 128 WMKICNMYGKFCNQVGEGLASAFLVSLSMVVVSCISAFSLFRLYG 172
>Medtr2g026530.1 | CASP POPTRDRAFT-like protein | HC |
chr2:9593399-9595933 | 20130731
Length = 201
Score = 84.3 bits (207), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 90/165 (54%), Gaps = 8/165 (4%)
Query: 36 LRSLETFLRLLPIGLCVSALVLMLKNSQENDYGSVD----YTDLGPFRYLVHANGICAGY 91
+R E LR + +GL V A+VL++ +SQ ++ ++ +TD+ +LV AN I AGY
Sbjct: 28 VRITELVLRFVNLGLGVLAVVLIVTDSQVREFFTIQKKAKFTDMKALVFLVVANAIAAGY 87
Query: 92 SLLSAV--FVAVPRPSPTMSR--AWTFFLLDQVLTYIILGAGAASTEVLYLMEKGDAGTT 147
SL+ + V++ + S ++ AW F DQV+ YI + A +A+ + + G
Sbjct: 88 SLIQGLRCVVSMIKGSVLFNKPLAWAIFSCDQVMAYITVAAVSAAAQSAVFAKMGQEQLQ 147
Query: 148 WSSACGSFGRFCNKLTATTAITFVAVLCYVLLSIISSYKLFTKYG 192
W C +G+FCN++ A F+ L V++S IS++ LF YG
Sbjct: 148 WMKICNMYGKFCNQVGEGLASAFLVSLSMVVVSCISAFSLFRLYG 192
>Medtr0004s0210.1 | CASP POPTRDRAFT-like protein | HC |
scaffold0004:83573-81269 | 20130731
Length = 163
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 74/152 (48%), Gaps = 12/152 (7%)
Query: 33 ATTLRSLETFLRLLPIGLCVSALVLMLKNSQENDYGSV----DYTDLGPFRYLVHANGIC 88
A T R LR L +SA+V+M+ + ++ + +V YT+ F+Y V AN I
Sbjct: 2 AKTGRICHLLLRFLAFSATLSAVVVMVSSHEKASFFTVSFEAKYTNSPAFKYFVIANSIV 61
Query: 89 AGYSLLSAVFVAVPRPSPTMSRAWTFFL-LDQVLTYIILGAGAASTEVLYLMEKGDAGTT 147
Y +F+ P S W + +D VLT +++ + +A+ + + + G+
Sbjct: 62 TVYGFF-VLFL------PAESLLWRLVVAMDMVLTMLLISSISAALAIAQVAKNGNNYAA 114
Query: 148 WSSACGSFGRFCNKLTATTAITFVAVLCYVLL 179
W CGS +FCN +T +F+ V+ Y++L
Sbjct: 115 WLPICGSVPKFCNHMTGALVASFIGVIIYLIL 146
>Medtr7g011090.1 | casparian strip membrane protein | HC |
chr7:2905231-2907425 | 20130731
Length = 186
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 85/175 (48%), Gaps = 13/175 (7%)
Query: 25 GEELEGNGATTLRS----LETFLRLLPIGLCVSALVLMLKNSQENDYGS------VDYTD 74
GEE N ++ L+ LRL+ I +++ + M + + + +Y D
Sbjct: 10 GEEKTSNQKGNMKRGVSILDFILRLIAIVATLASAIAMGTTDESLPFFTQFVRFRANYDD 69
Query: 75 LGPFRYLVHANGICAGYSLLSAVFVA--VPRPSPTMSRAWTFFLLDQVLTYIILGAGAAS 132
L R+ V A+ I +GY +LS + R S M+R F +LD V+ ++ +A+
Sbjct: 70 LPTLRFFVVASAIVSGYLILSLPLSILHIIRSSAGMTRV-IFIILDTVMLGLLTAGSSAA 128
Query: 133 TEVLYLMEKGDAGTTWSSACGSFGRFCNKLTATTAITFVAVLCYVLLSIISSYKL 187
++YL KG+ W + C + FC +++ + +F+A+ +++L ++S+ L
Sbjct: 129 ASIVYLAHKGNRKANWFAFCQQYNSFCERISGSLIGSFIAIPLFIMLILLSALVL 183
>Medtr7g083120.1 | plant integral membrane protein | HC |
chr7:31937630-31935708 | 20130731
Length = 186
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 80/159 (50%), Gaps = 6/159 (3%)
Query: 35 TLRSLETFLRLLPIGLCVSALVLMLKNSQENDYGSVDYTD----LGPFRYLVHANGICAG 90
T ++ LR+L I L ++V+ + N+Q S+ + F++ V ANG+
Sbjct: 26 TFLMVQNILRILVIVLTAVSIVVTVTNNQSVMLFSIRFEAHFYYTSSFKFFVAANGVVCF 85
Query: 91 YSLLSAVFVAVPRPSPTMSRAWTF--FLLDQVLTYIILGAGAASTEVLYLMEKGDAGTTW 148
S+L+ +F + R + + F FL+D V+T +++ +A+T V Y+ + G+ W
Sbjct: 86 MSVLTLIFNLLMRQQTPQRKDYYFLLFLVDLVMTVLLIAGCSAATAVGYVGQYGEKHVGW 145
Query: 149 SSACGSFGRFCNKLTATTAITFVAVLCYVLLSIISSYKL 187
++ C +FC + ++++A + L+I+ +YK
Sbjct: 146 TAICDHVQKFCKTNLISLLLSYLAFFANLGLTILIAYKF 184
>Medtr0693s0030.1 | CASP POPTRDRAFT-like protein | HC |
scaffold0693:2778-4089 | 20130731
Length = 184
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 60/146 (41%), Gaps = 15/146 (10%)
Query: 55 LVLMLKNSQENDYGSVDYTDLGPFRYLVHANGICAGYSLLSAV---FVAVP-----RPSP 106
++LM+K Y DL + L++ AGY++L F A S
Sbjct: 36 VILMIKKK-------ATYKDLDALKILLYVTSAAAGYNMLQLCKHSFSACSTIRNFNDSY 88
Query: 107 TMSRAWTFFLLDQVLTYIILGAGAASTEVLYLMEKGDAGTTWSSACGSFGRFCNKLTATT 166
M AW FLLDQ++ Y+ ++ E G W C F RFC ++
Sbjct: 89 YMHMAWISFLLDQIVVYLTFATNTSAFEACLFALTGSEAFQWMKVCNKFTRFCYQIGGAI 148
Query: 167 AITFVAVLCYVLLSIISSYKLFTKYG 192
++A + ++S IS+YK+ Y
Sbjct: 149 LCCYIASILMAMISTISAYKVLRMYS 174
>Medtr4g081880.1 | casparian strip membrane protein | HC |
chr4:31869526-31871135 | 20130731
Length = 189
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 3/116 (2%)
Query: 70 VDYTDLGPFRYLVHANGICAGYSLLSAV--FVAVPRPSPTMSRAWTFFLLDQVLTYIILG 127
V + DL F + V AN I GY LS V F + R SR FL D V+ ++
Sbjct: 66 VSFHDLPTFLFFVTANSIVCGYLALSLVLSFFHIVRTISVKSRILLVFL-DTVMFGLLTS 124
Query: 128 AGAASTEVLYLMEKGDAGTTWSSACGSFGRFCNKLTATTAITFVAVLCYVLLSIIS 183
+A+ ++Y+ G+ W C + FC +++ + +F+AV+ +++L ++S
Sbjct: 125 GASAAAAIVYVAHYGNPSANWFPFCQQYNSFCGRISGSLVGSFIAVVIFMILILMS 180
>Medtr8g013900.1 | CASP-like protein | HC | chr8:4294762-4291273 |
20130731
Length = 202
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 20/169 (11%)
Query: 28 LEGNGATTLRSLETFLRLLPI-GLC----VSALVLMLKNSQEND---YG-----SVDYTD 74
L G+G T R T + LL + GLC V +L LM+ Q + YG +T
Sbjct: 22 LVGDGEKTNRRRRTEVMLLILRGLCMGSSVVSLSLMITAKQSSSVSIYGFHLPVHSKWTF 81
Query: 75 LGPFRYLVHANGICAGYSLL-----SAVFVAVPRPSPTMSRAWTFFLLDQVLTYIILGAG 129
+ +LV + A +SLL ++ F+ P+ AW F DQ Y ++ AG
Sbjct: 82 SPSYEFLVGVSVAVAAHSLLQLLIGTSRFLRASSVIPSRKHAWVIFAGDQAFAYALMSAG 141
Query: 130 AASTEVLYLMEKGDAGTTWSSACGSFGRFCNKLTATTAITFVAVLCYVL 178
+A++ V L G T + C +FC+ + + A F++ C++L
Sbjct: 142 SAASGVTNLNRTGIRHTPLPNFCKPLHKFCDHVAISIAFNFIS--CFLL 188
>Medtr1g058560.1 | casparian strip membrane protein | HC |
chr1:25810191-25808737 | 20130731
Length = 195
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 72 YTDLGPFRYLVHANGICAGYSLLSAVF--VAVPRPSPTMSRAWTFFLLDQVLTYIILGAG 129
Y F++ + A I AGY +LS F VA+ RP T R + +LD V + +
Sbjct: 76 YDSFPAFQFFLIAMAIVAGYLVLSLPFSIVAIIRPHATGPRLF-LIILDTVFLTLATASA 134
Query: 130 AASTEVLYLMEKGDAGTTWSSACGSFGRFCNKLTATTAITFV 171
A++ ++YL G+ T W + C FG FC + + +F+
Sbjct: 135 ASAASIVYLAHNGNQDTNWLAICNQFGDFCAQTSGAVVASFI 176
>Medtr7g108130.1 | plant integral membrane protein | HC |
chr7:43972040-43974109 | 20130731
Length = 191
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 8/157 (5%)
Query: 39 LETFLRLLPIGLCVSALVLML--KNSQENDYGSVDYTDLGPFRYL------VHANGICAG 90
L+ LR+L L ++A +++ K ++ Y S+ + + Y+ + N I
Sbjct: 29 LDVLLRVLGFLLTLTATIIVGFGKETKVISYASLQFKVTAKWEYMSAIVFFLVTNAIGCS 88
Query: 91 YSLLSAVFVAVPRPSPTMSRAWTFFLLDQVLTYIILGAGAASTEVLYLMEKGDAGTTWSS 150
Y+ +S V + R S + LLD V+ ++ A A+ V L +KG++ W
Sbjct: 89 YAAISMVVSTIARTSGNKTALLMITLLDLVIMALLFSANGAAGAVGVLGQKGNSHVQWMK 148
Query: 151 ACGSFGRFCNKLTATTAITFVAVLCYVLLSIISSYKL 187
C F +C +T ++ + ++LL S +KL
Sbjct: 149 VCNVFDAYCRHMTVALVLSIIGSTVFLLLVAHSLFKL 185
>Medtr1g115285.1 | CASP-like protein | HC | chr1:51990203-51991617 |
20130731
Length = 194
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 81/190 (42%), Gaps = 22/190 (11%)
Query: 11 RSPMQLMMGTAASGGEELEGNGATTL--------RSLETFLRLLPIGLCVSALVLMLKNS 62
RSP L G A + +T+ SL RL +++ + ML S
Sbjct: 2 RSPQPLHNGVADNNRSPSAPRFHSTVAEHKLRRFNSLILVFRLTSFSFSLASSIFMLATS 61
Query: 63 QENDYGSVDYTDLGPFRYLVHANGICAGYSL--LSAVFVAVPRPS---PTMSRAWTFFLL 117
+ D S + FR++V +N I A YSL +SA + R + P + + W F
Sbjct: 62 RTGD--SPRWYHFDTFRFVVASNAIVATYSLFEMSASVWEISRGATLFPEVLQVWFDFGH 119
Query: 118 DQVLTYIILGAGAASTEVLYLMEKGDAGTTWSSACGSFGRFCNKLTATTAITFVAVLCYV 177
DQ+ Y++L A AA T + ++ D T +S FC + A+ + + L
Sbjct: 120 DQIFAYLLLSASAAGTSMARTLKDMDTCTVSNS-------FCVQTDIAIALGYASFLFLG 172
Query: 178 LLSIISSYKL 187
S++S ++L
Sbjct: 173 FTSLLSGFRL 182
>Medtr2g086740.1 | plant integral membrane protein | HC |
chr2:36464677-36466663 | 20130731
Length = 220
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 3/119 (2%)
Query: 71 DYTDLGPFRYLVHANGICAGYSLLSAVF--VAVPRPSPTMSRAWTFFLLDQVLTYIILGA 128
+ D F++ V ANG AG+ +LS F V + RP R + ++D VL +++ A
Sbjct: 100 QWDDFPMFKFFVVANGAAAGFLILSLPFSIVCIVRPLAAGPR-FLLVIVDLVLMALVVAA 158
Query: 129 GAASTEVLYLMEKGDAGTTWSSACGSFGRFCNKLTATTAITFVAVLCYVLLSIISSYKL 187
+++ V+YL G W++ C F FC + +FVA + L ++SS L
Sbjct: 159 ASSAAAVVYLAHNGSQDANWNAICQQFTDFCQGSSLAVVASFVASVFLACLVVVSSVAL 217