Miyakogusa Predicted Gene

Lj6g3v0365860.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0365860.1 tr|B9I119|B9I119_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_568469 PE=4 SV=1,48.7,8e-19,ZINC
FINGER (CCCH-TYPE) PROTEIN-LIKE (OS01G0884500 PROTEIN),NULL; GRB10
INTERACTING GYF PROTEIN,NULL,CUFF.57745.1
         (324 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g064260.1 | zinc finger CCCH domain protein | LC | chr3:28...   274   8e-74
Medtr3g064270.1 | zinc finger CCCH domain protein | LC | chr3:28...   265   4e-71
Medtr3g064250.1 | zinc finger CCCH domain protein | LC | chr3:28...   262   4e-70
Medtr3g064290.1 | SWIB/MDM2 domain; plus-3; GYF protein, putativ...   243   2e-64
Medtr3g064280.1 | zinc finger CCCH domain protein | LC | chr3:28...   236   2e-62
Medtr6g065790.2 | GYF domain protein | LC | chr6:24383562-243807...    53   5e-07
Medtr6g065790.1 | GYF domain protein | LC | chr6:24383562-243807...    52   6e-07

>Medtr3g064260.1 | zinc finger CCCH domain protein | LC |
           chr3:28905898-28897678 | 20130731
          Length = 793

 Score =  274 bits (701), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 171/337 (50%), Positives = 213/337 (63%), Gaps = 38/337 (11%)

Query: 1   MRNGLLKQPTILELEQKARSLHEDIIKHWIPRELQLLQNRIDQANERGRRRELSDYMDRK 60
           M NG+LK+PT+LELEQKARSLHEDI KHWI RE+ LLQ+RID ANE+GRRREL  YMDRK
Sbjct: 463 MTNGMLKKPTVLELEQKARSLHEDITKHWISREMALLQHRIDLANEKGRRRELGQYMDRK 522

Query: 61  LKLETPLEQTRLLSNIPNVIPEIADSNLSPEGSPREDKLEQNGLPDLAIGETSVSGGCYS 120
            KL +P EQ RLLS IP VIPE+ D+NLSPE S R+DKLEQ  LP+ AIGET  S   YS
Sbjct: 523 QKLGSPSEQLRLLSEIPKVIPEMVDTNLSPEDSSRKDKLEQKDLPESAIGETCNSFAQYS 582

Query: 121 KHSSFARYLNKIDVAGLPGTKTPVKTNQVKCTF----ESKSIQSSSKVR---QDDQKAAL 173
            H  F++ L+K   A + G K+ VK N+ +  F    E  S+ ++S+     QD  K AL
Sbjct: 583 THDGFSQCLDK--RADVVGPKSTVKKNKDETAFPATVEQLSVLTASQYTSKGQDGGKPAL 640

Query: 174 IKELNCDSQ-IFNTELSPWQSSNTESGS-GIDTKNLSAATRNAKQTIKEKQIISVAETID 231
            +E N   Q ++  + S  Q SNT S S G+D +NLS    +A QT+KE++  +VA+ + 
Sbjct: 641 -RESNSSCQTLYPAKCSLPQPSNTISASVGVDCRNLS-TNMDANQTVKERRSPAVADLVK 698

Query: 232 TSVNDKQVKSASAIVVEQKVSISTADVIELSDSDEEDVNVADASAGEK-MESPGISIWHC 290
            +VN                     DVI LSDSDEEDVN+   S+  K +ESP I IWHC
Sbjct: 699 ATVN---------------------DVIILSDSDEEDVNIKITSSERKGVESPDIPIWHC 737

Query: 291 LGPSGE-KRGPYSMSVLKCWSE--SVTHPIKFKVWKT 324
            G  G   RGP+ MS+LK WSE  S   P+ FKVWKT
Sbjct: 738 SGICGSGTRGPFPMSILKQWSELDSTFSPLDFKVWKT 774


>Medtr3g064270.1 | zinc finger CCCH domain protein | LC |
           chr3:28918653-28912043 | 20130731
          Length = 789

 Score =  265 bits (678), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 164/334 (49%), Positives = 208/334 (62%), Gaps = 36/334 (10%)

Query: 1   MRNGLLKQPTILELEQKARSLHEDIIKHWIPRELQLLQNRIDQANERGRRRELSDYMDRK 60
           M NG LK+PT+LELEQKAR+LHEDI KHWI RE++LL+NRID+ANE+G RRE   YMD+K
Sbjct: 463 MTNGQLKKPTLLELEQKARTLHEDITKHWISREIELLRNRIDRANEKGWRREYPFYMDQK 522

Query: 61  LKLETPLEQTRLLSNIPNVIPEIADSNLSPEGSPREDKLEQNGLPDLAIGETSVSGGCYS 120
            KLE+  EQ+RLLS IP VIPE+  +NLSPE S R+DK EQN L  +AIGET  SGG YS
Sbjct: 523 QKLESASEQSRLLSEIPKVIPELVGTNLSPEDSSRKDKFEQNDLQVVAIGETCNSGGQYS 582

Query: 121 KHSSFARYLNK-IDVAGLPGTKTPVKTNQ----VKCTFESKSIQSSSKVRQDDQKAALIK 175
            H+ FA  L+K  DV    G K+PVK NQ       T E  S+ ++S+  +DD K AL+K
Sbjct: 583 THNGFALCLDKRTDVV---GPKSPVKNNQDDPVFPATVEQLSVLAASE-DKDDGKPALLK 638

Query: 176 ELNCDSQIFNTELSPW-QSSNTESGSGIDTKNLSAATRNAKQTIKEKQIISVAETIDTSV 234
           E N + Q  N +     Q S T +   +D +NLS    +A  T+KE++ ++V++ +   +
Sbjct: 639 ESNSNCQTLNPKKCGLPQPSTTSASEDVDCRNLS-INMDANHTVKERRSVTVSDPVKAII 697

Query: 235 NDKQVKSASAIVVEQKVSISTADVIELSDSDEEDVNVADASAGEK-MESPGISIWHCLGP 293
           N                     DVI LSDSDEEDVN    S+G K  ES  I IW+C G 
Sbjct: 698 N---------------------DVIVLSDSDEEDVNSKVTSSGRKGAESIDIPIWYCSGV 736

Query: 294 SG-EKRGPYSMSVLKCWSE--SVTHPIKFKVWKT 324
            G   RGP+ M+VLK WSE  S   P+ FKVWKT
Sbjct: 737 RGCGTRGPFPMTVLKHWSELDSTYAPLDFKVWKT 770


>Medtr3g064250.1 | zinc finger CCCH domain protein | LC |
           chr3:28895175-28887869 | 20130731
          Length = 795

 Score =  262 bits (669), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 157/334 (47%), Positives = 210/334 (62%), Gaps = 37/334 (11%)

Query: 1   MRNGLLKQPTILELEQKARSLHEDIIKHWIPRELQLLQNRIDQANERGRRRELSDYMDRK 60
           M NGLLK+PTI+ELEQKAR+LHED+IKHWI RE +LL+NRID+ANE+G RRE   YMD+K
Sbjct: 466 MTNGLLKKPTIMELEQKARTLHEDMIKHWISRERELLRNRIDRANEKGWRREYPFYMDQK 525

Query: 61  LKLETPLEQTRLLSNIPNVIPEIADSNLSPEGSPREDKLEQNGLPDLAIGETSVSGGCYS 120
            KLE+P EQ+ LL+ IP VIPE+ D++LSPE S + DKLE N LP+LAIGET  S G YS
Sbjct: 526 QKLESPSEQSHLLNEIPKVIPEMIDTSLSPENSSKRDKLEHNDLPELAIGETCNSVGQYS 585

Query: 121 KHSSFARYLNK-IDVAGLPGTKTPVKTNQVKCTF-----ESKSIQSSSKVRQDDQKAALI 174
            H  FA+ L+K  DV    G KTPVK NQ    F     +  S+ + S+V++  Q   LI
Sbjct: 586 THDGFAQCLDKRTDVL---GPKTPVKNNQDGTAFPAATVDQVSVHTVSQVKETSQN--LI 640

Query: 175 KELNCDSQIFNTELSPWQSSNTESGSGIDTKNLSAATRNAKQTIKEKQIISVAETIDTSV 234
           ++ +     F   L    S+   + + +D +NL  +  +A QT+KE++ + VA+ +   V
Sbjct: 641 QDTSISRDDFKHGLLQESSNAIYASADVDCRNL-GSNMDADQTVKERKSVMVADPVKAIV 699

Query: 235 NDKQVKSASAIVVEQKVSISTADVIELSDSDEE-DVNVADASAGEKMESPGISIWHCLGP 293
           N                     DVI LSDSDE+ ++ V  ++A + +E+P ISIW+C G 
Sbjct: 700 N---------------------DVIVLSDSDEDVNIRVTSSAARKGVENPDISIWYCSGI 738

Query: 294 SG-EKRGPYSMSVLKCWSE--SVTHPIKFKVWKT 324
            G E +GP+ MSVLK WSE  S   P+ FKVWKT
Sbjct: 739 RGSETKGPFPMSVLKHWSELDSTFSPLDFKVWKT 772


>Medtr3g064290.1 | SWIB/MDM2 domain; plus-3; GYF protein, putative |
           HC | chr3:28934163-28930589 | 20130731
          Length = 410

 Score =  243 bits (619), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 161/345 (46%), Positives = 191/345 (55%), Gaps = 75/345 (21%)

Query: 1   MRNGLLKQPTILELEQKARSLHEDIIKHWIPRELQLLQNRIDQANERGRRRELSDYMDRK 60
           M NGLLK+PTILELEQKAR+LHEDI KHWI RE+ LL+NRID             YMDRK
Sbjct: 94  MANGLLKKPTILELEQKARTLHEDITKHWISREIALLRNRIDL------------YMDRK 141

Query: 61  LKLETPLEQTRLLSNIPNVIPEIADSNLSPEGSPREDKLEQNGLPDLAIGETSVSGGCYS 120
            KLE+P EQ+RLL  IP VIPE+ D+NLSPE S R+DK+EQ  LPDL IGET  SG    
Sbjct: 142 QKLESPSEQSRLLGEIPEVIPEMVDTNLSPEKSSRKDKVEQIDLPDLVIGETCNSG---- 197

Query: 121 KHSSFARYLNKIDVAGLPGTKTPVKTNQVKCTFESKSIQSSSKV---------------- 164
                         A   G KTPVK NQ   TF +  +Q S                   
Sbjct: 198 --------------ADFLGPKTPVKNNQDDTTFPATVVQVSVHTASQEKDTSQNLIQYTM 243

Query: 165 -RQDDQKAALIKELNCDSQIFNTELSPWQSSNTESGS-GIDTKNLSAATRNAKQTIKEKQ 222
             +DD K AL+KE N D Q     L   Q SNT S S  +D +NL+    +A QT+KE Q
Sbjct: 244 KSRDDCKHALVKEPNSDHQSLKCGLP--QPSNTISASYDVDCRNLN-TNMDANQTVKEIQ 300

Query: 223 IISVAETIDTSVNDKQVKSASAIVVEQKVSISTADVIELSDSDEEDVNVADASAGEK-ME 281
            + VA+ +  +VN                     D I LSDSDEEDVN+   SA  K + 
Sbjct: 301 SVMVADPVKPTVN---------------------DFIVLSDSDEEDVNIKVTSAERKGVV 339

Query: 282 SPGISIWHCLG-PSGEKRGPYSMSVLKCWSESVT-HPIKFKVWKT 324
           S  +SIWHC G   G  +GP+SMSVLK WSES T  P+ +KVWKT
Sbjct: 340 SSDVSIWHCSGIRGGGTKGPFSMSVLKRWSESATSSPLNYKVWKT 384


>Medtr3g064280.1 | zinc finger CCCH domain protein | LC |
           chr3:28928317-28921679 | 20130731
          Length = 787

 Score =  236 bits (602), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 156/341 (45%), Positives = 201/341 (58%), Gaps = 51/341 (14%)

Query: 1   MRNGLLKQPTILELEQKARSLHEDIIKHWIPRELQLLQNRIDQANERGRRRE----LSDY 56
           M NGL ++PTILELE+KAR+LHEDI KHWI RE++LL+NRID+ANE+G RRE    +  Y
Sbjct: 462 MTNGLPQKPTILELEKKARTLHEDITKHWISREIELLRNRIDRANEKGWRREYPFMIYLY 521

Query: 57  MDRKLKLETPLEQTRLLSNIPNVIPEIADSNLSPEGSPREDKLEQNGLPDLAIGETSVSG 116
           MD+K KLE+  EQ+RLLS IP VIPE+  +NLSPE S R+D LE+  LP+L IGET  + 
Sbjct: 522 MDQKQKLESAAEQSRLLSEIPKVIPELVGTNLSPEDSSRKDMLEKKDLPELDIGETCDAF 581

Query: 117 G-------CYSKHSSFARYLNKIDVAGLPGTKTPVKTNQVKCTFESKSIQSSSKVRQDDQ 169
           G       C S H  F +  +K   A + G K+PVK NQ    F +            +Q
Sbjct: 582 GQYSSEETCDSTHDGFTQCPDK--RADVVGPKSPVKNNQDDPAFPAPV----------EQ 629

Query: 170 KAALIKELNCDSQIFNTELSPW-QSSNTESGS-GIDTKNLSAATRNAKQTIKEKQIISVA 227
            +AL+KE N + Q  N E     QSSNT S S  ++ +NLS    +A   +KE++  SVA
Sbjct: 630 LSALLKESNSNCQTLNPEKCGLPQSSNTISASDDVNCRNLSTDM-DANHAVKERRSASVA 688

Query: 228 ETIDTSVNDKQVKSASAIVVEQKVSISTADVIELSDSDEEDVNVADASAGEK-MESPGIS 286
           + +   VND  V                     LSDSDEEDV++   S+G K +ES  I 
Sbjct: 689 DPVKVIVNDATV---------------------LSDSDEEDVSIEVTSSGRKGVESIDIP 727

Query: 287 IWHCLGPSG-EKRGPYSMSVLKCWSE--SVTHPIKFKVWKT 324
           IW+C G  G   RGP+ M+VLK WSE  S   P+ FKVWKT
Sbjct: 728 IWYCSGVRGCGTRGPFPMTVLKHWSELDSTYAPLDFKVWKT 768


>Medtr6g065790.2 | GYF domain protein | LC | chr6:24383562-24380716
           | 20130731
          Length = 411

 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 5/81 (6%)

Query: 248 EQKVSISTADVIELSDSDEEDVNVADASAGE-----KMESPGISIWHCLGPSGEKRGPYS 302
           +++V  +   VIELSD D+E++  +            +E+P  S W+ + P G  +GP+ 
Sbjct: 305 DKQVRPAQIQVIELSDDDDEEIEKSSTIKPSFITPVPVENPHSSTWNYIDPQGNVQGPFP 364

Query: 303 MSVLKCWSESVTHPIKFKVWK 323
           +  LKCW++S      FKVWK
Sbjct: 365 LFSLKCWNDSRYFSPDFKVWK 385


>Medtr6g065790.1 | GYF domain protein | LC | chr6:24383562-24380716
           | 20130731
          Length = 515

 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 5/81 (6%)

Query: 248 EQKVSISTADVIELSDSDEEDVNVADASAGE-----KMESPGISIWHCLGPSGEKRGPYS 302
           +++V  +   VIELSD D+E++  +            +E+P  S W+ + P G  +GP+ 
Sbjct: 409 DKQVRPAQIQVIELSDDDDEEIEKSSTIKPSFITPVPVENPHSSTWNYIDPQGNVQGPFP 468

Query: 303 MSVLKCWSESVTHPIKFKVWK 323
           +  LKCW++S      FKVWK
Sbjct: 469 LFSLKCWNDSRYFSPDFKVWK 489