Miyakogusa Predicted Gene
- Lj6g3v0365860.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v0365860.1 tr|B9I119|B9I119_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_568469 PE=4 SV=1,48.7,8e-19,ZINC
FINGER (CCCH-TYPE) PROTEIN-LIKE (OS01G0884500 PROTEIN),NULL; GRB10
INTERACTING GYF PROTEIN,NULL,CUFF.57745.1
(324 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g064260.1 | zinc finger CCCH domain protein | LC | chr3:28... 274 8e-74
Medtr3g064270.1 | zinc finger CCCH domain protein | LC | chr3:28... 265 4e-71
Medtr3g064250.1 | zinc finger CCCH domain protein | LC | chr3:28... 262 4e-70
Medtr3g064290.1 | SWIB/MDM2 domain; plus-3; GYF protein, putativ... 243 2e-64
Medtr3g064280.1 | zinc finger CCCH domain protein | LC | chr3:28... 236 2e-62
Medtr6g065790.2 | GYF domain protein | LC | chr6:24383562-243807... 53 5e-07
Medtr6g065790.1 | GYF domain protein | LC | chr6:24383562-243807... 52 6e-07
>Medtr3g064260.1 | zinc finger CCCH domain protein | LC |
chr3:28905898-28897678 | 20130731
Length = 793
Score = 274 bits (701), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 171/337 (50%), Positives = 213/337 (63%), Gaps = 38/337 (11%)
Query: 1 MRNGLLKQPTILELEQKARSLHEDIIKHWIPRELQLLQNRIDQANERGRRRELSDYMDRK 60
M NG+LK+PT+LELEQKARSLHEDI KHWI RE+ LLQ+RID ANE+GRRREL YMDRK
Sbjct: 463 MTNGMLKKPTVLELEQKARSLHEDITKHWISREMALLQHRIDLANEKGRRRELGQYMDRK 522
Query: 61 LKLETPLEQTRLLSNIPNVIPEIADSNLSPEGSPREDKLEQNGLPDLAIGETSVSGGCYS 120
KL +P EQ RLLS IP VIPE+ D+NLSPE S R+DKLEQ LP+ AIGET S YS
Sbjct: 523 QKLGSPSEQLRLLSEIPKVIPEMVDTNLSPEDSSRKDKLEQKDLPESAIGETCNSFAQYS 582
Query: 121 KHSSFARYLNKIDVAGLPGTKTPVKTNQVKCTF----ESKSIQSSSKVR---QDDQKAAL 173
H F++ L+K A + G K+ VK N+ + F E S+ ++S+ QD K AL
Sbjct: 583 THDGFSQCLDK--RADVVGPKSTVKKNKDETAFPATVEQLSVLTASQYTSKGQDGGKPAL 640
Query: 174 IKELNCDSQ-IFNTELSPWQSSNTESGS-GIDTKNLSAATRNAKQTIKEKQIISVAETID 231
+E N Q ++ + S Q SNT S S G+D +NLS +A QT+KE++ +VA+ +
Sbjct: 641 -RESNSSCQTLYPAKCSLPQPSNTISASVGVDCRNLS-TNMDANQTVKERRSPAVADLVK 698
Query: 232 TSVNDKQVKSASAIVVEQKVSISTADVIELSDSDEEDVNVADASAGEK-MESPGISIWHC 290
+VN DVI LSDSDEEDVN+ S+ K +ESP I IWHC
Sbjct: 699 ATVN---------------------DVIILSDSDEEDVNIKITSSERKGVESPDIPIWHC 737
Query: 291 LGPSGE-KRGPYSMSVLKCWSE--SVTHPIKFKVWKT 324
G G RGP+ MS+LK WSE S P+ FKVWKT
Sbjct: 738 SGICGSGTRGPFPMSILKQWSELDSTFSPLDFKVWKT 774
>Medtr3g064270.1 | zinc finger CCCH domain protein | LC |
chr3:28918653-28912043 | 20130731
Length = 789
Score = 265 bits (678), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 164/334 (49%), Positives = 208/334 (62%), Gaps = 36/334 (10%)
Query: 1 MRNGLLKQPTILELEQKARSLHEDIIKHWIPRELQLLQNRIDQANERGRRRELSDYMDRK 60
M NG LK+PT+LELEQKAR+LHEDI KHWI RE++LL+NRID+ANE+G RRE YMD+K
Sbjct: 463 MTNGQLKKPTLLELEQKARTLHEDITKHWISREIELLRNRIDRANEKGWRREYPFYMDQK 522
Query: 61 LKLETPLEQTRLLSNIPNVIPEIADSNLSPEGSPREDKLEQNGLPDLAIGETSVSGGCYS 120
KLE+ EQ+RLLS IP VIPE+ +NLSPE S R+DK EQN L +AIGET SGG YS
Sbjct: 523 QKLESASEQSRLLSEIPKVIPELVGTNLSPEDSSRKDKFEQNDLQVVAIGETCNSGGQYS 582
Query: 121 KHSSFARYLNK-IDVAGLPGTKTPVKTNQ----VKCTFESKSIQSSSKVRQDDQKAALIK 175
H+ FA L+K DV G K+PVK NQ T E S+ ++S+ +DD K AL+K
Sbjct: 583 THNGFALCLDKRTDVV---GPKSPVKNNQDDPVFPATVEQLSVLAASE-DKDDGKPALLK 638
Query: 176 ELNCDSQIFNTELSPW-QSSNTESGSGIDTKNLSAATRNAKQTIKEKQIISVAETIDTSV 234
E N + Q N + Q S T + +D +NLS +A T+KE++ ++V++ + +
Sbjct: 639 ESNSNCQTLNPKKCGLPQPSTTSASEDVDCRNLS-INMDANHTVKERRSVTVSDPVKAII 697
Query: 235 NDKQVKSASAIVVEQKVSISTADVIELSDSDEEDVNVADASAGEK-MESPGISIWHCLGP 293
N DVI LSDSDEEDVN S+G K ES I IW+C G
Sbjct: 698 N---------------------DVIVLSDSDEEDVNSKVTSSGRKGAESIDIPIWYCSGV 736
Query: 294 SG-EKRGPYSMSVLKCWSE--SVTHPIKFKVWKT 324
G RGP+ M+VLK WSE S P+ FKVWKT
Sbjct: 737 RGCGTRGPFPMTVLKHWSELDSTYAPLDFKVWKT 770
>Medtr3g064250.1 | zinc finger CCCH domain protein | LC |
chr3:28895175-28887869 | 20130731
Length = 795
Score = 262 bits (669), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 157/334 (47%), Positives = 210/334 (62%), Gaps = 37/334 (11%)
Query: 1 MRNGLLKQPTILELEQKARSLHEDIIKHWIPRELQLLQNRIDQANERGRRRELSDYMDRK 60
M NGLLK+PTI+ELEQKAR+LHED+IKHWI RE +LL+NRID+ANE+G RRE YMD+K
Sbjct: 466 MTNGLLKKPTIMELEQKARTLHEDMIKHWISRERELLRNRIDRANEKGWRREYPFYMDQK 525
Query: 61 LKLETPLEQTRLLSNIPNVIPEIADSNLSPEGSPREDKLEQNGLPDLAIGETSVSGGCYS 120
KLE+P EQ+ LL+ IP VIPE+ D++LSPE S + DKLE N LP+LAIGET S G YS
Sbjct: 526 QKLESPSEQSHLLNEIPKVIPEMIDTSLSPENSSKRDKLEHNDLPELAIGETCNSVGQYS 585
Query: 121 KHSSFARYLNK-IDVAGLPGTKTPVKTNQVKCTF-----ESKSIQSSSKVRQDDQKAALI 174
H FA+ L+K DV G KTPVK NQ F + S+ + S+V++ Q LI
Sbjct: 586 THDGFAQCLDKRTDVL---GPKTPVKNNQDGTAFPAATVDQVSVHTVSQVKETSQN--LI 640
Query: 175 KELNCDSQIFNTELSPWQSSNTESGSGIDTKNLSAATRNAKQTIKEKQIISVAETIDTSV 234
++ + F L S+ + + +D +NL + +A QT+KE++ + VA+ + V
Sbjct: 641 QDTSISRDDFKHGLLQESSNAIYASADVDCRNL-GSNMDADQTVKERKSVMVADPVKAIV 699
Query: 235 NDKQVKSASAIVVEQKVSISTADVIELSDSDEE-DVNVADASAGEKMESPGISIWHCLGP 293
N DVI LSDSDE+ ++ V ++A + +E+P ISIW+C G
Sbjct: 700 N---------------------DVIVLSDSDEDVNIRVTSSAARKGVENPDISIWYCSGI 738
Query: 294 SG-EKRGPYSMSVLKCWSE--SVTHPIKFKVWKT 324
G E +GP+ MSVLK WSE S P+ FKVWKT
Sbjct: 739 RGSETKGPFPMSVLKHWSELDSTFSPLDFKVWKT 772
>Medtr3g064290.1 | SWIB/MDM2 domain; plus-3; GYF protein, putative |
HC | chr3:28934163-28930589 | 20130731
Length = 410
Score = 243 bits (619), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 161/345 (46%), Positives = 191/345 (55%), Gaps = 75/345 (21%)
Query: 1 MRNGLLKQPTILELEQKARSLHEDIIKHWIPRELQLLQNRIDQANERGRRRELSDYMDRK 60
M NGLLK+PTILELEQKAR+LHEDI KHWI RE+ LL+NRID YMDRK
Sbjct: 94 MANGLLKKPTILELEQKARTLHEDITKHWISREIALLRNRIDL------------YMDRK 141
Query: 61 LKLETPLEQTRLLSNIPNVIPEIADSNLSPEGSPREDKLEQNGLPDLAIGETSVSGGCYS 120
KLE+P EQ+RLL IP VIPE+ D+NLSPE S R+DK+EQ LPDL IGET SG
Sbjct: 142 QKLESPSEQSRLLGEIPEVIPEMVDTNLSPEKSSRKDKVEQIDLPDLVIGETCNSG---- 197
Query: 121 KHSSFARYLNKIDVAGLPGTKTPVKTNQVKCTFESKSIQSSSKV---------------- 164
A G KTPVK NQ TF + +Q S
Sbjct: 198 --------------ADFLGPKTPVKNNQDDTTFPATVVQVSVHTASQEKDTSQNLIQYTM 243
Query: 165 -RQDDQKAALIKELNCDSQIFNTELSPWQSSNTESGS-GIDTKNLSAATRNAKQTIKEKQ 222
+DD K AL+KE N D Q L Q SNT S S +D +NL+ +A QT+KE Q
Sbjct: 244 KSRDDCKHALVKEPNSDHQSLKCGLP--QPSNTISASYDVDCRNLN-TNMDANQTVKEIQ 300
Query: 223 IISVAETIDTSVNDKQVKSASAIVVEQKVSISTADVIELSDSDEEDVNVADASAGEK-ME 281
+ VA+ + +VN D I LSDSDEEDVN+ SA K +
Sbjct: 301 SVMVADPVKPTVN---------------------DFIVLSDSDEEDVNIKVTSAERKGVV 339
Query: 282 SPGISIWHCLG-PSGEKRGPYSMSVLKCWSESVT-HPIKFKVWKT 324
S +SIWHC G G +GP+SMSVLK WSES T P+ +KVWKT
Sbjct: 340 SSDVSIWHCSGIRGGGTKGPFSMSVLKRWSESATSSPLNYKVWKT 384
>Medtr3g064280.1 | zinc finger CCCH domain protein | LC |
chr3:28928317-28921679 | 20130731
Length = 787
Score = 236 bits (602), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 156/341 (45%), Positives = 201/341 (58%), Gaps = 51/341 (14%)
Query: 1 MRNGLLKQPTILELEQKARSLHEDIIKHWIPRELQLLQNRIDQANERGRRRE----LSDY 56
M NGL ++PTILELE+KAR+LHEDI KHWI RE++LL+NRID+ANE+G RRE + Y
Sbjct: 462 MTNGLPQKPTILELEKKARTLHEDITKHWISREIELLRNRIDRANEKGWRREYPFMIYLY 521
Query: 57 MDRKLKLETPLEQTRLLSNIPNVIPEIADSNLSPEGSPREDKLEQNGLPDLAIGETSVSG 116
MD+K KLE+ EQ+RLLS IP VIPE+ +NLSPE S R+D LE+ LP+L IGET +
Sbjct: 522 MDQKQKLESAAEQSRLLSEIPKVIPELVGTNLSPEDSSRKDMLEKKDLPELDIGETCDAF 581
Query: 117 G-------CYSKHSSFARYLNKIDVAGLPGTKTPVKTNQVKCTFESKSIQSSSKVRQDDQ 169
G C S H F + +K A + G K+PVK NQ F + +Q
Sbjct: 582 GQYSSEETCDSTHDGFTQCPDK--RADVVGPKSPVKNNQDDPAFPAPV----------EQ 629
Query: 170 KAALIKELNCDSQIFNTELSPW-QSSNTESGS-GIDTKNLSAATRNAKQTIKEKQIISVA 227
+AL+KE N + Q N E QSSNT S S ++ +NLS +A +KE++ SVA
Sbjct: 630 LSALLKESNSNCQTLNPEKCGLPQSSNTISASDDVNCRNLSTDM-DANHAVKERRSASVA 688
Query: 228 ETIDTSVNDKQVKSASAIVVEQKVSISTADVIELSDSDEEDVNVADASAGEK-MESPGIS 286
+ + VND V LSDSDEEDV++ S+G K +ES I
Sbjct: 689 DPVKVIVNDATV---------------------LSDSDEEDVSIEVTSSGRKGVESIDIP 727
Query: 287 IWHCLGPSG-EKRGPYSMSVLKCWSE--SVTHPIKFKVWKT 324
IW+C G G RGP+ M+VLK WSE S P+ FKVWKT
Sbjct: 728 IWYCSGVRGCGTRGPFPMTVLKHWSELDSTYAPLDFKVWKT 768
>Medtr6g065790.2 | GYF domain protein | LC | chr6:24383562-24380716
| 20130731
Length = 411
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 248 EQKVSISTADVIELSDSDEEDVNVADASAGE-----KMESPGISIWHCLGPSGEKRGPYS 302
+++V + VIELSD D+E++ + +E+P S W+ + P G +GP+
Sbjct: 305 DKQVRPAQIQVIELSDDDDEEIEKSSTIKPSFITPVPVENPHSSTWNYIDPQGNVQGPFP 364
Query: 303 MSVLKCWSESVTHPIKFKVWK 323
+ LKCW++S FKVWK
Sbjct: 365 LFSLKCWNDSRYFSPDFKVWK 385
>Medtr6g065790.1 | GYF domain protein | LC | chr6:24383562-24380716
| 20130731
Length = 515
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 248 EQKVSISTADVIELSDSDEEDVNVADASAGE-----KMESPGISIWHCLGPSGEKRGPYS 302
+++V + VIELSD D+E++ + +E+P S W+ + P G +GP+
Sbjct: 409 DKQVRPAQIQVIELSDDDDEEIEKSSTIKPSFITPVPVENPHSSTWNYIDPQGNVQGPFP 468
Query: 303 MSVLKCWSESVTHPIKFKVWK 323
+ LKCW++S FKVWK
Sbjct: 469 LFSLKCWNDSRYFSPDFKVWK 489