Miyakogusa Predicted Gene

Lj6g3v0352690.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0352690.1 tr|B9INK8|B9INK8_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_780809 PE=4
SV=1,45.08,6e-18,coiled-coil,NULL,CUFF.57725.1
         (124 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g075490.2 | kinase interacting (KIP1-like) family protein ...   129   8e-31
Medtr5g075490.1 | kinase interacting (KIP1-like) family protein ...   129   8e-31
Medtr3g467610.1 | kinase interacting (KIP1-like) family protein ...    61   2e-10
Medtr6g082800.1 | RAB6-interacting protein, putative | HC | chr6...    53   6e-08

>Medtr5g075490.2 | kinase interacting (KIP1-like) family protein |
           HC | chr5:32106549-32103552 | 20130731
          Length = 604

 Score =  129 bits (323), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 71/124 (57%), Positives = 93/124 (75%)

Query: 1   MSKLMEKQTHMEEKVREWEIHCQSLQEKIRKIYSEKIEMEEILKGEIEQLKEDNSCMKNS 60
           MSKL+E+QTH++E +REWE   +S +E+IR I SEKIEME  LK  I+ LK +    +N+
Sbjct: 417 MSKLLEEQTHLKELIREWESRGRSFEEQIRNIQSEKIEMEAELKNGIQLLKAEIEQRENN 476

Query: 61  IKDLNESIDALTLERDDLNAEGGSLKEVLNSRDNQIEQMDMNLKQLHMEHVQLIAGMEEA 120
           IKDLN S+D L LE+D+LN E GSLKE +NSRD +I  +D +L  LH+EHVQLI+ +EEA
Sbjct: 477 IKDLNVSLDNLKLEKDNLNVEVGSLKEDVNSRDGRIGSLDRHLNDLHIEHVQLISSLEEA 536

Query: 121 QRQV 124
            RQV
Sbjct: 537 CRQV 540


>Medtr5g075490.1 | kinase interacting (KIP1-like) family protein |
           HC | chr5:32107376-32103539 | 20130731
          Length = 604

 Score =  129 bits (323), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 71/124 (57%), Positives = 93/124 (75%)

Query: 1   MSKLMEKQTHMEEKVREWEIHCQSLQEKIRKIYSEKIEMEEILKGEIEQLKEDNSCMKNS 60
           MSKL+E+QTH++E +REWE   +S +E+IR I SEKIEME  LK  I+ LK +    +N+
Sbjct: 417 MSKLLEEQTHLKELIREWESRGRSFEEQIRNIQSEKIEMEAELKNGIQLLKAEIEQRENN 476

Query: 61  IKDLNESIDALTLERDDLNAEGGSLKEVLNSRDNQIEQMDMNLKQLHMEHVQLIAGMEEA 120
           IKDLN S+D L LE+D+LN E GSLKE +NSRD +I  +D +L  LH+EHVQLI+ +EEA
Sbjct: 477 IKDLNVSLDNLKLEKDNLNVEVGSLKEDVNSRDGRIGSLDRHLNDLHIEHVQLISSLEEA 536

Query: 121 QRQV 124
            RQV
Sbjct: 537 CRQV 540


>Medtr3g467610.1 | kinase interacting (KIP1-like) family protein |
           HC | chr3:27891154-27889395 | 20130731
          Length = 536

 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 51/74 (68%)

Query: 25  LQEKIRKIYSEKIEMEEILKGEIEQLKEDNSCMKNSIKDLNESIDALTLERDDLNAEGGS 84
           L+ ++ K++ ++ +MEE  K EIE LKE+    KNSI+DLN S+D L LE D+LN E G 
Sbjct: 394 LKTEVCKLFEQQTQMEETFKDEIEILKEEIKDKKNSIEDLNMSLDGLILESDNLNGEFGL 453

Query: 85  LKEVLNSRDNQIEQ 98
           LKE +N R  +IE+
Sbjct: 454 LKEEMNLRGKKIEE 467


>Medtr6g082800.1 | RAB6-interacting protein, putative | HC |
           chr6:30927794-30923153 | 20130731
          Length = 508

 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 68/132 (51%), Gaps = 14/132 (10%)

Query: 1   MSKLMEKQTHMEEKVREWEIHCQSLQEKIRKIYSEKIEMEE-------ILKGEIEQLKED 53
           ++ L E +T +   + EWE    SL  K+R+  +E +E EE       +++GEI  LKE+
Sbjct: 307 IASLSEIKTQLTSTLEEWESRSHSLANKLRRCEAENLEKEELYATQKMVMQGEISSLKEE 366

Query: 54  NSCMKNSIKDLNESIDA-------LTLERDDLNAEGGSLKEVLNSRDNQIEQMDMNLKQL 106
               ++ ++ +N+  D        L  E D+ NA   +LK  ++ RD+QI  MD  L QL
Sbjct: 367 LHQRRHDVEAVNKEFDGHKQKFDMLMTEIDEANANIDNLKAEISFRDDQIANMDRELIQL 426

Query: 107 HMEHVQLIAGME 118
             +  +LI+  E
Sbjct: 427 RAQESELISRSE 438