Miyakogusa Predicted Gene

Lj6g3v0328460.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0328460.1 Non Characterized Hit- tr|F6HDU1|F6HDU1_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,49.43,2e-16,seg,NULL,NODE_62634_length_1003_cov_60.294117.path2.1
         (312 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g081440.1 | hypothetical protein | HC | chr3:36878121-3688...   229   4e-60

>Medtr3g081440.1 | hypothetical protein | HC |
           chr3:36878121-36881123 | 20130731
          Length = 257

 Score =  229 bits (583), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 111/142 (78%), Positives = 126/142 (88%), Gaps = 2/142 (1%)

Query: 16  YTLQPSRICNEDILFCIDIDPQSLVEMKTATGH--NGRPLTRLDSIKQSILLFVHSKLTI 73
           Y LQPSRI NEDILFCIDIDPQS+ E+K AT    NGRP TRLD+IKQ+I+LFV++KLTI
Sbjct: 11  YKLQPSRINNEDILFCIDIDPQSMAELKGATSGRPNGRPFTRLDAIKQAIVLFVNAKLTI 70

Query: 74  NPDHRFAFATLSNTVSWLKKDFSSDVESTMAAMRGLSATNISTQPDLTNLFRLAAHEAKK 133
           NP HRFAFATLS++VSWL+K+FSS+VEST+AAMR LSAT  S+QPDLT LFRLAAHEAKK
Sbjct: 71  NPQHRFAFATLSDSVSWLRKEFSSEVESTVAAMRRLSATTSSSQPDLTTLFRLAAHEAKK 130

Query: 134 SRAQGRILRVILFYCRSNVRPQ 155
           SR QGRILRVILFYCRS VRP+
Sbjct: 131 SRMQGRILRVILFYCRSTVRPR 152