Miyakogusa Predicted Gene

Lj6g3v0327420.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0327420.1 tr|A9TUC6|A9TUC6_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_150936,39.34,5e-19,
,NODE_84813_length_665_cov_15.273685.path2.1
         (125 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g112530.1 | replication factor A protein | HC | chr7:46281...   220   2e-58
Medtr7g112530.2 | replication factor A protein | HC | chr7:46281...   220   2e-58

>Medtr7g112530.1 | replication factor A protein | HC |
           chr7:46281720-46277455 | 20130731
          Length = 125

 Score =  220 bits (561), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 108/125 (86%), Positives = 114/125 (91%)

Query: 1   MAFFEVKSGALVSLQDLHPSSPFFKQGASIRIIGKLREYSIETGLAIVVDGDSILKVSTE 60
           MAFFE KSGALVSLQD+ PSSPFFKQG S+RIIGKL EYS ETGLA V+DG+ ILKVSTE
Sbjct: 1   MAFFEGKSGALVSLQDMRPSSPFFKQGTSVRIIGKLHEYSSETGLATVIDGNDILKVSTE 60

Query: 61  HLRDLTFQVGSVYQFIGELLIQPDNEGVLQARVGRNVDGIDLNLYHQSLLLLKQFQANHL 120
           HL+DL FQVGSVYQFIGELLI+ DNEGVLQA VGRNVDGIDLNLYHQSLLLLKQFQANHL
Sbjct: 61  HLKDLKFQVGSVYQFIGELLIRTDNEGVLQAHVGRNVDGIDLNLYHQSLLLLKQFQANHL 120

Query: 121 NNPAT 125
           NN AT
Sbjct: 121 NNSAT 125


>Medtr7g112530.2 | replication factor A protein | HC |
           chr7:46281720-46277455 | 20130731
          Length = 125

 Score =  220 bits (561), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 108/125 (86%), Positives = 114/125 (91%)

Query: 1   MAFFEVKSGALVSLQDLHPSSPFFKQGASIRIIGKLREYSIETGLAIVVDGDSILKVSTE 60
           MAFFE KSGALVSLQD+ PSSPFFKQG S+RIIGKL EYS ETGLA V+DG+ ILKVSTE
Sbjct: 1   MAFFEGKSGALVSLQDMRPSSPFFKQGTSVRIIGKLHEYSSETGLATVIDGNDILKVSTE 60

Query: 61  HLRDLTFQVGSVYQFIGELLIQPDNEGVLQARVGRNVDGIDLNLYHQSLLLLKQFQANHL 120
           HL+DL FQVGSVYQFIGELLI+ DNEGVLQA VGRNVDGIDLNLYHQSLLLLKQFQANHL
Sbjct: 61  HLKDLKFQVGSVYQFIGELLIRTDNEGVLQAHVGRNVDGIDLNLYHQSLLLLKQFQANHL 120

Query: 121 NNPAT 125
           NN AT
Sbjct: 121 NNSAT 125