Miyakogusa Predicted Gene

Lj6g3v0315170.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0315170.1 Non Characterized Hit- tr|I3SNC8|I3SNC8_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,95.04,0,SYNBINDIN,NULL; SYNBINDIN,Sybindin-like protein;
SNARE-like,Longin-like domain; no description,NULL;,CUFF.57702.1
         (141 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g103680.1 | trafficking protein particle complex subunit-l...   285   1e-77
Medtr5g075330.3 | trafficking protein particle complex subunit-l...   273   3e-74
Medtr5g075330.2 | trafficking protein particle complex subunit-l...   273   3e-74
Medtr5g075330.1 | trafficking protein particle complex subunit-l...   273   3e-74
Medtr8g095450.1 | trafficking protein particle complex subunit-l...    65   2e-11
Medtr4g048530.1 | trafficking protein particle complex subunit-l...    65   2e-11

>Medtr8g103680.1 | trafficking protein particle complex subunit-like
           protein | LC | chr8:43631208-43629016 | 20130731
          Length = 213

 Score =  285 bits (728), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 134/141 (95%), Positives = 136/141 (96%)

Query: 1   MAAVYSLYIINKSGGLIYYKDYGSSGRMDTNDTLRVASLWHSMHAISQQLSPVSGCFGIE 60
           MAAVYSLYIINKSGGLIYYKDYGSSGRMDTND+LRVASLWHSMHAISQQLSPVSGC GIE
Sbjct: 73  MAAVYSLYIINKSGGLIYYKDYGSSGRMDTNDSLRVASLWHSMHAISQQLSPVSGCTGIE 132

Query: 61  LLQADTFDLHCFQSLTGTKFFVVSEPGAQYMESLLKFIYELYTDYVLKNPFYEMEMPIRC 120
           LLQADTFDLHCFQSLTGTKFFVV EPG Q MESLLKF+YELYTDYVLKNPFYEMEMPIRC
Sbjct: 133 LLQADTFDLHCFQSLTGTKFFVVCEPGTQQMESLLKFVYELYTDYVLKNPFYEMEMPIRC 192

Query: 121 ELFDINLTQAVQKDRVALLGR 141
           ELFDINL QAVQKDRVALLGR
Sbjct: 193 ELFDINLAQAVQKDRVALLGR 213


>Medtr5g075330.3 | trafficking protein particle complex subunit-like
           protein | HC | chr5:32007458-32004338 | 20130731
          Length = 174

 Score =  273 bits (699), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 127/141 (90%), Positives = 136/141 (96%)

Query: 1   MAAVYSLYIINKSGGLIYYKDYGSSGRMDTNDTLRVASLWHSMHAISQQLSPVSGCFGIE 60
           MAA+YSLYIINKSGGLIYYKDYGS+GRMDTNDTLRVASLWHSMHAISQQLSPVSGC GIE
Sbjct: 34  MAAIYSLYIINKSGGLIYYKDYGSAGRMDTNDTLRVASLWHSMHAISQQLSPVSGCSGIE 93

Query: 61  LLQADTFDLHCFQSLTGTKFFVVSEPGAQYMESLLKFIYELYTDYVLKNPFYEMEMPIRC 120
           LLQADTFDLHCFQSLTGTKFF V EPG Q +ESLLK++YELYTDYVLKNPFYE+EMPIRC
Sbjct: 94  LLQADTFDLHCFQSLTGTKFFAVCEPGTQQIESLLKYVYELYTDYVLKNPFYEIEMPIRC 153

Query: 121 ELFDINLTQAVQKDRVALLGR 141
           ELFD+NLTQ+VQKDRVALLG+
Sbjct: 154 ELFDMNLTQSVQKDRVALLGQ 174


>Medtr5g075330.2 | trafficking protein particle complex subunit-like
           protein | HC | chr5:32007498-32004338 | 20130731
          Length = 141

 Score =  273 bits (699), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 127/141 (90%), Positives = 136/141 (96%)

Query: 1   MAAVYSLYIINKSGGLIYYKDYGSSGRMDTNDTLRVASLWHSMHAISQQLSPVSGCFGIE 60
           MAA+YSLYIINKSGGLIYYKDYGS+GRMDTNDTLRVASLWHSMHAISQQLSPVSGC GIE
Sbjct: 1   MAAIYSLYIINKSGGLIYYKDYGSAGRMDTNDTLRVASLWHSMHAISQQLSPVSGCSGIE 60

Query: 61  LLQADTFDLHCFQSLTGTKFFVVSEPGAQYMESLLKFIYELYTDYVLKNPFYEMEMPIRC 120
           LLQADTFDLHCFQSLTGTKFF V EPG Q +ESLLK++YELYTDYVLKNPFYE+EMPIRC
Sbjct: 61  LLQADTFDLHCFQSLTGTKFFAVCEPGTQQIESLLKYVYELYTDYVLKNPFYEIEMPIRC 120

Query: 121 ELFDINLTQAVQKDRVALLGR 141
           ELFD+NLTQ+VQKDRVALLG+
Sbjct: 121 ELFDMNLTQSVQKDRVALLGQ 141


>Medtr5g075330.1 | trafficking protein particle complex subunit-like
           protein | HC | chr5:32007507-32004338 | 20130731
          Length = 141

 Score =  273 bits (699), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 127/141 (90%), Positives = 136/141 (96%)

Query: 1   MAAVYSLYIINKSGGLIYYKDYGSSGRMDTNDTLRVASLWHSMHAISQQLSPVSGCFGIE 60
           MAA+YSLYIINKSGGLIYYKDYGS+GRMDTNDTLRVASLWHSMHAISQQLSPVSGC GIE
Sbjct: 1   MAAIYSLYIINKSGGLIYYKDYGSAGRMDTNDTLRVASLWHSMHAISQQLSPVSGCSGIE 60

Query: 61  LLQADTFDLHCFQSLTGTKFFVVSEPGAQYMESLLKFIYELYTDYVLKNPFYEMEMPIRC 120
           LLQADTFDLHCFQSLTGTKFF V EPG Q +ESLLK++YELYTDYVLKNPFYE+EMPIRC
Sbjct: 61  LLQADTFDLHCFQSLTGTKFFAVCEPGTQQIESLLKYVYELYTDYVLKNPFYEIEMPIRC 120

Query: 121 ELFDINLTQAVQKDRVALLGR 141
           ELFD+NLTQ+VQKDRVALLG+
Sbjct: 121 ELFDMNLTQSVQKDRVALLGQ 141


>Medtr8g095450.1 | trafficking protein particle complex subunit-like
           protein | HC | chr8:39949424-39945171 | 20130731
          Length = 171

 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 66/141 (46%), Gaps = 15/141 (10%)

Query: 7   LYIINKSGGLIYYKDYGSSGRM--DTNDTLRVASLWHSMHAISQQLSPVS---GCFGIEL 61
           LY+ N++G  + YK++           D   +  L  S+ +++ ++ P S   G  G+  
Sbjct: 28  LYVFNRNGICLLYKEWNRPLHTLNPHQDHKLMFGLLFSLKSLTAKIDPTSPQKGNLGVPQ 87

Query: 62  LQADTFDLHCFQSLT----------GTKFFVVSEPGAQYMESLLKFIYELYTDYVLKNPF 111
           L       H F++ T          G K  +V+ P    +   LK+IY LY +YV+KNP 
Sbjct: 88  LPGQGCSFHTFRTNTYKLTFMETPSGIKIILVTHPRTGDLRESLKYIYNLYVEYVVKNPL 147

Query: 112 YEMEMPIRCELFDINLTQAVQ 132
           Y    PIR ELF+  L Q V+
Sbjct: 148 YTPGSPIRSELFNTTLDQYVR 168


>Medtr4g048530.1 | trafficking protein particle complex subunit-like
           protein | HC | chr4:17221969-17227053 | 20130731
          Length = 169

 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 15/141 (10%)

Query: 7   LYIINKSGGLIYYKDYGSSGRM--DTNDTLRVASLWHSMHAISQQLSPVS---GCFGIEL 61
           LY+ N++G  + Y+++           D   +  L  S+ +++ ++ P S   G  G+  
Sbjct: 26  LYVFNRNGICLLYREWNRPLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTSAEKGNLGVPQ 85

Query: 62  L----------QADTFDLHCFQSLTGTKFFVVSEPGAQYMESLLKFIYELYTDYVLKNPF 111
           L          + +T+ L   +S +G K  +V+ P    +   LK+IY LY +YV+KNP 
Sbjct: 86  LPGQGCSFHSFRTNTYKLSFMESPSGIKIILVTHPRTGDLRDSLKYIYNLYVEYVVKNPL 145

Query: 112 YEMEMPIRCELFDINLTQAVQ 132
           Y    PIR ELF+  L Q V+
Sbjct: 146 YTPGSPIRSELFNTTLDQYVR 166