Miyakogusa Predicted Gene
- Lj6g3v0305070.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v0305070.1 Non Characterized Hit- tr|I1N3E7|I1N3E7_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.55804
PE,83.92,0,WD-REPEAT PROTEIN,NULL; WD40 REPEAT PROTEIN,NULL; WD40,WD40
repeat; WD_REPEATS_2,WD40 repeat;
WD_REP,NODE_52286_length_1794_cov_74.026756.path2.1
(429 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g074890.1 | transducin/WD-like repeat-protein | HC | chr7:... 658 0.0
Medtr6g004040.1 | katanin p80 WD40 repeat subunit B1-like protei... 62 1e-09
Medtr7g076230.1 | periodic tryptophan protein | HC | chr7:286742... 56 5e-08
Medtr2g014020.1 | WD domain, G-beta repeat protein | HC | chr2:3... 54 4e-07
Medtr2g016690.1 | transducin/WD-like repeat-protein | HC | chr2:... 52 1e-06
Medtr2g059200.1 | transducin family protein/WD-40 repeat protein... 52 1e-06
Medtr1g072140.1 | transducin/WD40 repeat protein | HC | chr1:320... 50 5e-06
Medtr1g054300.1 | WD-40 repeat protein/notchless protein, putati... 49 7e-06
>Medtr7g074890.1 | transducin/WD-like repeat-protein | HC |
chr7:28020226-28029179 | 20130731
Length = 432
Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/415 (77%), Positives = 349/415 (84%), Gaps = 15/415 (3%)
Query: 22 FFNSYFRHRQSEVRSIAN-----------PDPKSVFNRFXXXXXXXXXXXXXXDQIKRHH 70
FFN+Y+R RQSEVRSIAN P K + N+ DQIKRHH
Sbjct: 22 FFNTYYRKRQSEVRSIANLNPNPNPNPIVPSSKPLPNK----KSNPKHHSSDKDQIKRHH 77
Query: 71 PLDLNTLKGHGDAVTGICFSPDGQNLATACADGIVRVFKLDDASSKSFRFLRINLPPGGH 130
PLDLNTLKGHGDAVTGICFSPDG+NLATACADG+VRVFKL+DASSKSF+F RINLPPGG
Sbjct: 78 PLDLNTLKGHGDAVTGICFSPDGRNLATACADGVVRVFKLEDASSKSFKFHRINLPPGGP 137
Query: 131 PXXXXXXXXXXXXXXXXHTLSGCSLYMYGEEKPKTSDSKTQPKLPLPEIKWERHKVHDKK 190
P H+L+GCSLYMYGEEKPK S+ K+Q KLPLPEIKWE +VHDKK
Sbjct: 138 PTAVAFADDASSIVVSSHSLTGCSLYMYGEEKPKVSEDKSQAKLPLPEIKWEHRQVHDKK 197
Query: 191 AILTLFGTSATYGSADGSTIIASCSEGTDIILWHGKTGKSVGHVDTNQLKNNMAAISPNG 250
AI+T+FG SATYGSADGS +IASCSEGTDIILWHGKTGKS+GHVDTNQLKNNMA ISPNG
Sbjct: 198 AIITMFGASATYGSADGSALIASCSEGTDIILWHGKTGKSLGHVDTNQLKNNMATISPNG 257
Query: 251 RFIAAAAFTADVKVWEIVYAKDGSVKEVSSAMQLKGHKSAVTWLCFTPNSEQVITASKDG 310
RFIAAAAFTADVKVWEIVY+KDGSVKEVS+ MQLKGHKSAVTWLCF+PNSEQ+ITASKDG
Sbjct: 258 RFIAAAAFTADVKVWEIVYSKDGSVKEVSNVMQLKGHKSAVTWLCFSPNSEQIITASKDG 317
Query: 311 SLRVWNINVRYHLDEDPKTLKVFPIPLHDSNGTTLHYDRLSISPDGKIMAATHGSTLQWL 370
SLR+WNINVRYH+DEDPKTLKVFPIPL DS GTTLHYDRLSISPDGKI+AATHGSTLQWL
Sbjct: 318 SLRIWNINVRYHMDEDPKTLKVFPIPLRDSAGTTLHYDRLSISPDGKILAATHGSTLQWL 377
Query: 371 CLETGKVLDTAEKAHDGDITCISWAPKTIPMGDKPILVLATASADKKVKLWAAPS 425
+ETGKVLDTAEKAHDGDIT I+W PK IPMG++ +LVLATAS DKKVKLWAAPS
Sbjct: 378 SVETGKVLDTAEKAHDGDITGIAWGPKAIPMGNEKVLVLATASGDKKVKLWAAPS 432
>Medtr6g004040.1 | katanin p80 WD40 repeat subunit B1-like protein |
HC | chr6:91770-77124 | 20130731
Length = 760
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 32/171 (18%)
Query: 252 FIAAAAFTADVKVWEIVYAKDGSVKEVSSAMQLKGHKSAVTWLCFTPNSEQVITASKDGS 311
+AA A + +K+W++ AK L GH+S T + F P E + S D +
Sbjct: 73 LVAAGAASGTIKLWDLEEAK--------IVRTLTGHRSNCTSVDFHPFGEFFASGSLDTN 124
Query: 312 LRVWNINVRYHLDEDPKTLKVFPIPLHDSNGTTLHYDRLSISPDGK-IMAATHGSTLQWL 370
L++W+I + +H G T + + +PDG+ +++ +T++
Sbjct: 125 LKIWDIRKKG--------------CIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLW 170
Query: 371 CLETGKVLDTAEKAHDGDITCISWAPKTIPMGDKPILVLATASADKKVKLW 421
L GK+L K+H+G I CI + P +LAT SAD+ VK W
Sbjct: 171 DLTAGKLLHDF-KSHEGQIQCIDFHPSE--------FLLATGSADRTVKFW 212
>Medtr7g076230.1 | periodic tryptophan protein | HC |
chr7:28674290-28681135 | 20130731
Length = 880
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 96/217 (44%), Gaps = 32/217 (14%)
Query: 207 GSTIIASCSEGTDIILWHGKTGKSVGHVDTNQLKNNMAAISPNGRFIAAAAFTADVKVWE 266
G+ + C++ +++W ++ + + N A S + + +A A VKVW
Sbjct: 338 GNWLSFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCVAYSQDSQLLATGADDNKVKVW- 396
Query: 267 IVYAKDGSVKEVSSAMQLKGHKSAVTWLCFTPNSEQVITASKDGSLRVWNINVRYHLDED 326
+V + H +AVT L F ++ +++AS DG++R W++ VRY
Sbjct: 397 -------TVSSGFCFVTFSEHTNAVTALHFMASNNCLLSASLDGTIRAWDL-VRY----- 443
Query: 327 PKTLKVFPIPLHDSNGTTLHYDRLSISPDGKIMAATHGSTLQWLC--LETGKVLDTAEKA 384
+ + F P ++ + L+ G+++ A + + + TG++LD
Sbjct: 444 -RNFRTFTTP------SSRQFVSLAADQSGEVICAGTSDSFEIFVWSMRTGRLLDVLS-G 495
Query: 385 HDGDITCISWAPKTIPMGDKPILVLATASADKKVKLW 421
H+ + + ++P VLA++S DK V+LW
Sbjct: 496 HEAPVHGLVFSPTNA--------VLASSSWDKTVRLW 524
>Medtr2g014020.1 | WD domain, G-beta repeat protein | HC |
chr2:3880000-3884918 | 20130731
Length = 524
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 83/196 (42%), Gaps = 27/196 (13%)
Query: 200 ATYGSADGSTIIASCSEGTDIILWHGKTGKSVGHVDTNQLKNNMAAISPNGRFIAAAAFT 259
A++ S++G+ +AS + +W T +S +T+ L P A ++F
Sbjct: 253 ASHFSSNGN-FLASVGHDKKVFIWDVGTFQSYATEETHSLLITDVRFRPQSTIFATSSFD 311
Query: 260 ADVKVWEIVYAKDGSVKEVSSAMQLKGHKSAVTWLCFTPNSEQVITASKDGS-LRVWNIN 318
+++W+ + K S +L GH V L F P ++ + + +R+WN+N
Sbjct: 312 RSIRLWD-------TTKPTKSLFKLSGHSEQVMSLDFHPEKVDILCSCDNNDIIRLWNVN 364
Query: 319 VRYHLDEDPKTLKVFPIPLHDSNGTTLHYDRLSISPDGKIMAATHGSTLQWLCLETGKVL 378
R L+V T ++ P G ++A G+ L+ + +ET K++
Sbjct: 365 KR-------SCLRV----------TKGGSKQVRFQPLGMLLATATGNNLKIIDVETDKLV 407
Query: 379 DTAEKAHDGDITCISW 394
K HD D+ I W
Sbjct: 408 YNL-KGHDKDVLSICW 422
>Medtr2g016690.1 | transducin/WD-like repeat-protein | HC |
chr2:5155282-5150008 | 20130731
Length = 331
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 100/249 (40%), Gaps = 46/249 (18%)
Query: 208 STIIASCSEGTDIILWHGKTGKSVGHVDTNQLKNNMAAISPNGRFIAAAAFTADVKVWEI 267
S ++A+ S I W K+G+ + + N I+P+ R++AAA ++++++
Sbjct: 20 SVLLATASYDHTIRFWEAKSGRCYRTIQYPDSQVNRLEITPDKRYLAAAG-NPHIRLFDV 78
Query: 268 VYAKDGSVKEVSSAMQLKGHKSAVTWLCFTPNSEQVITASKDGSLRVWNINVRYHLDEDP 327
+ M GH S V + F + + + S+DG++++W++ E
Sbjct: 79 ------NSNSPQPVMSYDGHTSNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPGCQREYE 132
Query: 328 KTLKVFPIPLH---------DSNGTTLHYD-------------------RLSISPDGKIM 359
V + LH D NG +D L++ DG ++
Sbjct: 133 SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELVPEVDTAVRSLTVMWDGSLV 192
Query: 360 AA--THGSTLQWLCLETGKVLDTAE-----KAHDGDITCISWAPKTIPMGDKPILVLATA 412
A +G+ W L + + E +AH+G I +P+ P LATA
Sbjct: 193 VAANNNGTCYVWRLLRGTQTMTNFEPLHKLQAHNGYILKCVLSPEFC----DPHRYLATA 248
Query: 413 SADKKVKLW 421
S+D VK+W
Sbjct: 249 SSDHTVKIW 257
>Medtr2g059200.1 | transducin family protein/WD-40 repeat protein |
HC | chr2:24447545-24441827 | 20130731
Length = 953
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 93/216 (43%), Gaps = 26/216 (12%)
Query: 208 STIIASCSEGTDIILWHGKTGKSVGHVDTNQLKNNMAAISPNGRFIAAAAFTADVKVWEI 267
ST +AS S + L+ G+ ++ L A + G +AAA +K+
Sbjct: 74 STCLASGSVDHSVKLYKFPGGEFETNITRFTLPIRSLAFNKKGSMLAAAGDDEGIKLINT 133
Query: 268 VYAKDGSVKEVSSAMQLKGHKSAVTWLCFTPNSEQVITASKDGSLRVWNINVRYHLDEDP 327
V DGS+ V LKGHK VT L F PN E + + G++ +W + H ++
Sbjct: 134 V---DGSIARV-----LKGHKGPVTGLAFDPNGEYLASLDSIGTVIIWEL----HSGKNL 181
Query: 328 KTLK-VFPIPLHDSNGTTLHYDRLSISPDGKIMAATH-GSTLQWLCLETGKVLDTAEKAH 385
LK + P D+ L + L SPDG+ +A + + +T + L T H
Sbjct: 182 HNLKGIAP----DTGLDLLTMNVLCWSPDGETLAIPGLKNDVVMYDRDTAEKLFTLRGDH 237
Query: 386 DGDITCISWAPKTIPMGDKPILVLATASADKKVKLW 421
I + W+P M AT+S DK++ +W
Sbjct: 238 TQPICFLCWSPNGKYM--------ATSSLDKQILIW 265
>Medtr1g072140.1 | transducin/WD40 repeat protein | HC |
chr1:32005480-32003360 | 20130731
Length = 316
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 89/215 (41%), Gaps = 28/215 (13%)
Query: 208 STIIASCSEGTDIILWHGKTGKSVGHVDTNQLKNNMAAISPNGRFIAAAAFTADVKVWEI 267
S I S S+ + +W TG V + + +P +I + +F V+VWE
Sbjct: 81 SHYICSASDDKTLRIWDANTGDCVKTLRGHGHNVFCVNFNPQSNYIVSGSFDETVRVWE- 139
Query: 268 VYAKDGSVKEVSSAMQLKGHKSAVTWLCFTPNSEQVITASKDGSLRVWNINVRYHLDEDP 327
VK S +K H VT + F + +++ S DGS ++W+ N L
Sbjct: 140 -------VKTGKSVHVIKAHAMPVTSVDFNRDGSLIVSGSHDGSCKIWDTNSGALL---- 188
Query: 328 KTLKVFPIPLHDSNGTTLHYDRLSISPDGK-IMAATHGSTLQWLCLETGKVLDTAEKAHD 386
KTL +P + + + SP+GK I+ AT TL+ G+ L K +
Sbjct: 189 KTLIDDKVP-------AVSFAKF--SPNGKFILVATLNDTLKLWNYAAGRSL----KMYS 235
Query: 387 GDITCISWAPKTIPMGDKPILVLATASADKKVKLW 421
G + + T + + +V + S D+ + LW
Sbjct: 236 GHVNRVYCLTSTFSVTNGRYIV--SGSEDRCLYLW 268
>Medtr1g054300.1 | WD-40 repeat protein/notchless protein, putative
| HC | chr1:23359694-23368343 | 20130731
Length = 483
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 63/116 (54%), Gaps = 19/116 (16%)
Query: 211 IASCSEGTDIILW------HGKTGKSVGHVDTNQLKNNMAAISPNGRFIAAAAFTADVKV 264
+ S S+ + LW H KT + GH QL N++ SP+G++IA+A+F VK+
Sbjct: 342 LVSGSDDFTMFLWEPFINKHPKT-RMTGH---QQLVNHVY-FSPDGQWIASASFDKSVKI 396
Query: 265 WEIVYAKDGSVKEVSSAMQLKGHKSAVTWLCFTPNSEQVITASKDGSLRVWNINVR 320
W +G+ + +A +GH V + ++ +S +++ SKD +L+VW+I R
Sbjct: 397 W------NGTTGKFVTA--FRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTR 444