Miyakogusa Predicted Gene

Lj6g3v0248690.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0248690.1 Non Characterized Hit- tr|I1MYA5|I1MYA5_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.48381
PE,79.86,0,coiled-coil,NULL; AAA_23,NULL; no description,NULL;
RAD50,NULL; P-loop containing nucleoside triphos,CUFF.57684.1
         (561 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g084300.1 | DNA repair protein RAD50 | HC | chr3:38052903-...   802   0.0  

>Medtr3g084300.1 | DNA repair protein RAD50 | HC |
           chr3:38052903-38067117 | 20130731
          Length = 1311

 Score =  802 bits (2071), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/549 (72%), Positives = 451/549 (82%)

Query: 1   MSTVDKMLIKGIRSFDPENKNVITFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNAR 60
           MSTVDKMLIKGIRSFDPENKNVITFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNAR
Sbjct: 1   MSTVDKMLIKGIRSFDPENKNVITFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNAR 60

Query: 61  SGHSFIHDPKVAGETETKGQIKLRFKTPAGKDVVCIRSFQLTQKASKMEYKAIESVLQTI 120
           SGHSFIHDPKVAGETETKGQIKLRFKT AG+DVVCIRSFQLTQKASKMEYKAIESVLQTI
Sbjct: 61  SGHSFIHDPKVAGETETKGQIKLRFKTAAGRDVVCIRSFQLTQKASKMEYKAIESVLQTI 120

Query: 121 NPHSGEKVCLSYRCANMDKEIPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDI 180
           NPHSGEKVCLSYRCA+MD+EIPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDI
Sbjct: 121 NPHSGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDI 180

Query: 181 FSATRYTKALEVIKKLHKEQAQEIKTYKLKLEHLQTLKDAAYKLRESIAQDQEKMEALKS 240
           FSATRYTKALEVIKKLHK+QAQEIKTYKLKLE+LQTLKDAAY LRE+I  DQEK E+LK 
Sbjct: 181 FSATRYTKALEVIKKLHKDQAQEIKTYKLKLENLQTLKDAAYTLRENITHDQEKAESLKD 240

Query: 241 QVQQLDGGIQDLDAKIDHAEKTFKDLRRLQEQISTKTAQRSVLFKEQQKQYSALXXXXXX 300
           Q+QQLDG I+DLDAKIDH +KT K L  L+ QIS+KT +RS LF+ QQKQYS L      
Sbjct: 241 QIQQLDGSIKDLDAKIDHVDKTLKHLLELKGQISSKTTERSTLFRSQQKQYSDLEEEFEE 300

Query: 301 XXXXXXXWKTKFSEMIAMLETKITKLEREMEDIDTKSSFLQKQIDNSNWEMGKLQTEAKA 360
                   KTKF E IA  +T+I+KL+RE  DI+TK   L+K IDNS WE+ KLQTEA+A
Sbjct: 301 PDEELMESKTKFDEKIANSQTQISKLDREKSDINTKFPVLKKTIDNSIWEISKLQTEAEA 360

Query: 361 HMSLKNERDSSIQNLFARYSLGSLPKSPFSDEVALNLTSRVKSRLGXXXXXXXXXXXAIN 420
           HMSL++ERDS I+N+F RY+LGSLPK PFS E ALNLT+RVKSRLG           A N
Sbjct: 361 HMSLRSERDSCIKNIFDRYNLGSLPKPPFSAEDALNLTNRVKSRLGDLEKDLEDKKNANN 420

Query: 421 NELKNAWDCYMEANDCWKNVDATKQAKIEIKSGKLKSIEEKTKERDSFELQISNVNFSLI 480
            ELK AWDCY+ AN+ W+N +A  Q K E K+G +K IEEK  E +SFEL+ISN++ S +
Sbjct: 421 TELKMAWDCYLNANESWQNTEAKIQTKREHKAGIIKRIEEKKNELESFELEISNIDVSHL 480

Query: 481 DERERNLHIEVERKTKQLSEREFEPNIRHMQSELYSVDQKIKGVNREKDIMASDSEDRVK 540
           DERER L I +E K KQ  EREFE     ++++  +V+QKI+ +NRE   MA+DS++R K
Sbjct: 481 DERERELQIRLEGKIKQRDEREFELKKSEIENKALNVEQKIRALNREMLTMATDSKEREK 540

Query: 541 LSLKKTELE 549
           LSL K +LE
Sbjct: 541 LSLMKGDLE 549