Miyakogusa Predicted Gene

Lj6g3v0227420.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0227420.1 Non Characterized Hit- tr|I3S932|I3S932_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.1,0,60S
RIBOSOMAL PROTEIN L12,Ribosomal protein L11; Ribosomal protein
L11/L12,Ribosomal protein L11; no,CUFF.57646.1
         (223 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g080800.1 | 50S ribosomal protein L11P | HC | chr3:3657096...   273   1e-73
Medtr1g060610.1 | 50S ribosomal protein L11P | HC | chr1:2638964...   107   1e-23

>Medtr3g080800.1 | 50S ribosomal protein L11P | HC |
           chr3:36570966-36568277 | 20130731
          Length = 215

 Score =  273 bits (697), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 133/143 (93%), Positives = 140/143 (97%)

Query: 78  IIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTADKPGYVIPVEITVYDDKSFT 137
           IIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTADKPGY+IPVEITV+DDKSFT
Sbjct: 71  IIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTADKPGYIIPVEITVFDDKSFT 130

Query: 138 FILKTPPASVLLLKAAGVEKGSKDPKMQKVGKVTIDQVRTIATEKLPDLNCSTLESAMRI 197
           FILKTPPASVLLLKAAGVEKGSKDPK QKVGKVTIDQ+RTIA+EKLPDLNC T+ESAMRI
Sbjct: 131 FILKTPPASVLLLKAAGVEKGSKDPKAQKVGKVTIDQLRTIASEKLPDLNCETMESAMRI 190

Query: 198 IAGTAANMGIDVDPPVLEPKIKE 220
           IAGTAANMGIDVDPP+LEPK K+
Sbjct: 191 IAGTAANMGIDVDPPILEPKQKQ 213


>Medtr1g060610.1 | 50S ribosomal protein L11P | HC |
           chr1:26389644-26392836 | 20130731
          Length = 149

 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/134 (47%), Positives = 79/134 (58%), Gaps = 3/134 (2%)

Query: 79  IKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTAD-KPGYVIPVEITVYDDKSFT 137
           I+L + AG A PAPPVGPALG   +N+MAFCKD+NART   KP   + V IT Y D +F 
Sbjct: 11  IRLRVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKFKPDTPMAVTITAYKDNTFE 70

Query: 138 FILKTPPASVLLLKAAGVEKGSKDPKMQKVGKVTIDQVRTIATEKLPD--LNCSTLESAM 195
           F +K+P  S  L KAAG+E GS  P       +++  V  IA  K  D  L    LES  
Sbjct: 71  FTVKSPSVSWYLKKAAGIELGSTRPGHVTATSLSLRHVYEIAKVKQSDPYLQGMPLESIS 130

Query: 196 RIIAGTAANMGIDV 209
           + I GTA +MGI +
Sbjct: 131 KSIIGTARSMGIKI 144