Miyakogusa Predicted Gene
- Lj6g3v0156180.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v0156180.2 Non Characterized Hit- tr|I1JDJ8|I1JDJ8_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,78.33,3e-19,WD40,WD40
repeat; WD_REPEATS_2,WD40 repeat;
WD_REPEATS_REGION,WD40-repeat-containing domain; WD_REPE,CUFF.57567.2
(66 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g060710.1 | transducin/WD40 repeat protein | HC | chr2:257... 105 1e-23
Medtr4g415070.1 | NB-ARC domain protein | LC | chr4:4348159-4351... 97 3e-21
Medtr7g106870.1 | transducin family protein/WD-40 repeat protein... 67 5e-12
Medtr7g057540.1 | transducin family protein/WD-40 repeat protein... 66 7e-12
Medtr7g055590.1 | transducin family protein/WD-40 repeat protein... 65 1e-11
Medtr3g051690.1 | transducin family protein/WD-40 repeat protein... 65 1e-11
Medtr5g008010.1 | anaphase-promoting complex subunit cdc20-like ... 63 6e-11
Medtr7g034625.1 | anaphase-promoting complex subunit cdc20-like ... 59 9e-10
Medtr7g451830.1 | anaphase-promoting complex subunit cdc20-like ... 57 4e-09
Medtr7g047640.1 | anaphase-promoting complex subunit cdc20-like ... 57 4e-09
Medtr2g100460.1 | anaphase-promoting complex subunit cdc20-like ... 55 1e-08
Medtr4g102510.1 | cell cycle switch protein CCS52a | HC | chr4:4... 55 2e-08
Medtr7g053100.1 | transducin family protein/WD-40 repeat protein... 53 6e-08
Medtr3g067940.1 | cell cycle switch protein CCS52a | HC | chr3:3... 53 7e-08
>Medtr2g060710.1 | transducin/WD40 repeat protein | HC |
chr2:25747612-25744900 | 20130731
Length = 452
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/66 (77%), Positives = 54/66 (81%)
Query: 1 MNKVGGLDPHASRVLHLSQSPDGLTVVSAGADETLRFWDIFGPPATDTSKISHLDNLLSL 60
M KVGGLDPH SRVLHLSQSPDGLTVVSAG DETLRFWDIFGP DT + S L NLLS+
Sbjct: 387 MTKVGGLDPHTSRVLHLSQSPDGLTVVSAGGDETLRFWDIFGPAVNDTRESSVLGNLLSM 446
Query: 61 KISALR 66
K S +R
Sbjct: 447 KASQIR 452
>Medtr4g415070.1 | NB-ARC domain protein | LC | chr4:4348159-4351340
| 20130731
Length = 320
Score = 97.4 bits (241), Expect = 3e-21, Method: Composition-based stats.
Identities = 45/54 (83%), Positives = 47/54 (87%)
Query: 1 MNKVGGLDPHASRVLHLSQSPDGLTVVSAGADETLRFWDIFGPPATDTSKISHL 54
M KVGGLDPH SRVLHLSQS DGLTVVS+G DETLRFWDIFGPPATDT + S L
Sbjct: 67 MTKVGGLDPHTSRVLHLSQSSDGLTVVSSGGDETLRFWDIFGPPATDTIESSVL 120
>Medtr7g106870.1 | transducin family protein/WD-40 repeat protein |
HC | chr7:43528726-43526248 | 20130731
Length = 457
Score = 66.6 bits (161), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 36/45 (80%)
Query: 1 MNKVGGLDPHASRVLHLSQSPDGLTVVSAGADETLRFWDIFGPPA 45
M K+ L+ H SRVL+++QSPDG TV SA ADETLRFW++FG PA
Sbjct: 391 MVKMADLNGHTSRVLYMAQSPDGCTVASAAADETLRFWNVFGSPA 435
>Medtr7g057540.1 | transducin family protein/WD-40 repeat protein |
HC | chr7:20727221-20729135 | 20130731
Length = 426
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Query: 1 MNKVGGLDPHASRVLHLSQSPDGLTVVSAGADETLRFWDIFGPPATDTSKISH 53
M K+ L+ H SRVL+++QSPDG TV +A ADETLRFW++FG P T K +H
Sbjct: 365 MVKMAELNGHTSRVLYMTQSPDGCTVATAAADETLRFWNVFGTPKA-TPKTNH 416
>Medtr7g055590.1 | transducin family protein/WD-40 repeat protein |
HC | chr7:19027415-19024828 | 20130731
Length = 496
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Query: 1 MNKVGGLDPHASRVLHLSQSPDGLTVVSAGADETLRFWDIFGPPATDTSKISH 53
M K+ L+ H SRVL+++QSPDG TV +A ADETLRFW++FG P T K +H
Sbjct: 365 MVKMAELNGHTSRVLYMTQSPDGCTVATAAADETLRFWNVFGTPKA-TPKTNH 416
>Medtr3g051690.1 | transducin family protein/WD-40 repeat protein |
HC | chr3:20455089-20458114 | 20130731
Length = 459
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 35/48 (72%)
Query: 1 MNKVGGLDPHASRVLHLSQSPDGLTVVSAGADETLRFWDIFGPPATDT 48
M K+ L+ H SRVLH++Q+PDG TV +A ADETLRFW+ FG P T
Sbjct: 394 MVKIAELNGHTSRVLHMAQNPDGCTVATAAADETLRFWNAFGTPEVAT 441
>Medtr5g008010.1 | anaphase-promoting complex subunit cdc20-like
protein | HC | chr5:1630923-1633589 | 20130731
Length = 454
Score = 62.8 bits (151), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 34/44 (77%)
Query: 1 MNKVGGLDPHASRVLHLSQSPDGLTVVSAGADETLRFWDIFGPP 44
M K+ L+ H SRVL+++QSPDG TV +A ADETLRFW+ FG P
Sbjct: 389 MVKMAELNGHTSRVLYMAQSPDGCTVATAAADETLRFWNAFGTP 432
>Medtr7g034625.1 | anaphase-promoting complex subunit cdc20-like
protein | HC | chr7:13120333-13118780 | 20130731
Length = 336
Score = 58.9 bits (141), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 33/46 (71%)
Query: 1 MNKVGGLDPHASRVLHLSQSPDGLTVVSAGADETLRFWDIFGPPAT 46
M ++ L H SRVL ++QSPDG TV SA ADETLRFW++F P +
Sbjct: 280 MVRMAELRGHTSRVLCMAQSPDGCTVASASADETLRFWNVFRSPTS 325
>Medtr7g451830.1 | anaphase-promoting complex subunit cdc20-like
protein | HC | chr7:17667124-17669364 | 20130731
Length = 431
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 31/42 (73%)
Query: 1 MNKVGGLDPHASRVLHLSQSPDGLTVVSAGADETLRFWDIFG 42
M K+ L H SRVLH++QSPDG V +A ADETLR W++FG
Sbjct: 375 MVKMAELKGHTSRVLHMTQSPDGDMVATAAADETLRLWNVFG 416
>Medtr7g047640.1 | anaphase-promoting complex subunit cdc20-like
protein | HC | chr7:16692701-16695367 | 20130731
Length = 431
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 31/42 (73%)
Query: 1 MNKVGGLDPHASRVLHLSQSPDGLTVVSAGADETLRFWDIFG 42
M K+ L H SRVLH++QSPDG V +A ADETLR W++FG
Sbjct: 375 MVKMAELKGHTSRVLHMTQSPDGDMVATAAADETLRLWNVFG 416
>Medtr2g100460.1 | anaphase-promoting complex subunit cdc20-like
protein | LC | chr2:43171758-43169529 | 20130731
Length = 386
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 32/45 (71%)
Query: 1 MNKVGGLDPHASRVLHLSQSPDGLTVVSAGADETLRFWDIFGPPA 45
M K+ L+ H S+VLH++QSPDG V SA D T++ W+IFG PA
Sbjct: 323 MLKMADLNGHTSKVLHMAQSPDGCKVASAANDGTVKIWNIFGNPA 367
>Medtr4g102510.1 | cell cycle switch protein CCS52a | HC |
chr4:42481670-42487423 | 20130731
Length = 475
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 1 MNKVGGLDPHASRVLHLSQSPDGLTVVSAGADETLRFWDIFGPPATDTSK 50
M+K+ L H RVL+L+ SPDG T+V+ DETLRFW++F P + ++
Sbjct: 412 MSKLATLTGHTYRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQNTE 461
>Medtr7g053100.1 | transducin family protein/WD-40 repeat protein |
HC | chr7:18684589-18686200 | 20130731
Length = 436
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 36/48 (75%), Gaps = 3/48 (6%)
Query: 1 MNKVGGLDPHASRVLHLSQSPDGLTV--VSAGADETLRFWDIFG-PPA 45
M K+ L H SRVLH++QSPDG TV +A AD+TLRFW++FG PPA
Sbjct: 372 MLKIAELHGHTSRVLHMTQSPDGSTVASAAAAADQTLRFWEVFGTPPA 419
>Medtr3g067940.1 | cell cycle switch protein CCS52a | HC |
chr3:30567275-30564377 | 20130731
Length = 479
Score = 52.8 bits (125), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 3 KVGGLDPHASRVLHLSQSPDGLTVVSAGADETLRFWDIFGPPATDTSKISHLDNLLSLKI 62
KV L H+ RVL+L+ SPDG T+V+ DETLRFW++F P+ T L SL
Sbjct: 418 KVATLTGHSMRVLYLAMSPDGQTIVTGAGDETLRFWNVF--PSMKTPAPVKDTGLWSLGR 475
Query: 63 SALR 66
+ +R
Sbjct: 476 TQIR 479