Miyakogusa Predicted Gene

Lj6g3v0143860.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0143860.1 tr|F4I5S3|F4I5S3_ARATH Chromosome transmission
fidelity protein 18 OS=Arabidopsis thaliana GN=CTF18 ,57.19,0,no
description,NULL; seg,NULL; CTF18, CHROMOSOME TRANSMISSION FIDELITY
FACTOR 18 HOMOLOG,NULL; HOLLI,CUFF.57527.1
         (579 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g047790.1 | chromosome transmission fidelity protein | HC ...   785   0.0  

>Medtr1g047790.1 | chromosome transmission fidelity protein | HC |
           chr1:18064972-18083135 | 20130731
          Length = 985

 Score =  785 bits (2026), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/583 (69%), Positives = 446/583 (76%), Gaps = 5/583 (0%)

Query: 1   MNSVLSHSRPKCLVVDEIDGALGDGRGAVEVLLKLVSAERKQNGGNKSLGERQLDGKSSK 60
           MNSVLS S+PKCLVVDEIDGALGDG+GAVEVLLK++SAE+K + G +SL + Q++ KSSK
Sbjct: 404 MNSVLSDSKPKCLVVDEIDGALGDGKGAVEVLLKMISAEKKPDAGKQSLDKGQMERKSSK 463

Query: 61  KRQKTASLSRPVICFCNDLYAPALRPLRQVAKVHIFVQPTVSRVVSRLKYICYKEGMKAT 120
           K +KTASLSRPVIC CNDLYAPALR LRQVAKVHIFVQPTVSRVVSRLKYIC KEG+KA 
Sbjct: 464 KGRKTASLSRPVICICNDLYAPALRSLRQVAKVHIFVQPTVSRVVSRLKYICNKEGVKAN 523

Query: 121 AIALTALAEYTECDIRSCLNTLQFVSKKKETLNAIDIGSQVVGQKDMSKNVLDIWKQFFQ 180
           AIAL+AL +YT CDIRSCLNTLQF+SKKKE LNA DIGSQVVGQKDMSKNVLDIWK+ FQ
Sbjct: 524 AIALSALVDYTACDIRSCLNTLQFLSKKKEALNAFDIGSQVVGQKDMSKNVLDIWKELFQ 583

Query: 181 RKRTKKMERESRRSKSFEFDYLYSLISNRGDSDLFLDGIHENILQLNYHDPVMQKTVKCF 240
           RKRTKKMER+S  SK  EFD LYSLIS RGDSDL LDGIHENILQLNYHDPVMQKTVKC 
Sbjct: 584 RKRTKKMERKSLNSKFSEFDTLYSLISYRGDSDLILDGIHENILQLNYHDPVMQKTVKCL 643

Query: 241 NSLGVYDLMHQYIMCTQQMRIHVYLPAIAVNIHHIVAQVQKPNIEWPKSYQRCRAMMMER 300
           NSL VYDL+HQYIM TQQM + V+LP IA+ +HH VAQVQKPNIEWPKSY R R  MME+
Sbjct: 644 NSLEVYDLLHQYIMRTQQMALLVHLPPIAIIVHHTVAQVQKPNIEWPKSYHRYRTTMMEK 703

Query: 301 MDILKTWHYQISPSIARNLSASSFVEDXXXXXXXXXXXXTIRPVALQLLSDKEKNDLAEL 360
           MDIL TWH++ISP IAR+LS +SFVED            +IRPVALQLLSDKEKND+A+L
Sbjct: 704 MDILNTWHHKISPHIARHLSPTSFVEDLISPLLDILSPPSIRPVALQLLSDKEKNDIAQL 763

Query: 361 VSTMVSYAVTYKTMKPDILLHTVKYEGADDLGLSLVPPISNFINFKDYTSNHYVLSLAMX 420
           VSTMVSYA+TYK MK D L +T+KYE AD+L LSLVP I +FINFKDYTSNHY LSL M 
Sbjct: 764 VSTMVSYAITYKKMKSDALPNTLKYEVADELSLSLVPSIGSFINFKDYTSNHYALSLPMK 823

Query: 421 XXXXXXXXXXXILHVNNDKTVASVNGGHEIIDAGT-NKVPLANT-NRATAVDLKTNEFQA 478
                      IL  N  KT    NGGH+ I+AG  N +P ANT N A A+D+KT E Q 
Sbjct: 824 QVLVHEVEKQKILQANI-KTATLTNGGHDAIEAGNKNNIPFANTKNHAAALDMKTIESQP 882

Query: 479 NVFARLLNPTPITVSQDSNPNGSANATDXXXXXXXXXXXXXXXXXXX-XXXXXXXNVKGL 537
           NV AR  N  P TVS + NP    NAT+                           +VKGL
Sbjct: 883 NVLARKSNEHPKTVSPNLNPTKIPNATNKTKLLDMANKKKPSRSSLNFFDRFKKSSVKGL 942

Query: 538 QN-DRSQQKEATLEKHRCPLLFKFNEGFTNAVKRPVRMREFLS 579
           QN DRS QKE T EK R PLLFKFNEGFTNAVKRPVRMREFLS
Sbjct: 943 QNDDRSLQKETTSEKDRSPLLFKFNEGFTNAVKRPVRMREFLS 985