Miyakogusa Predicted Gene

Lj6g3v0098580.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0098580.1 Non Characterized Hit- tr|K3YME3|K3YME3_SETIT
Uncharacterized protein (Fragment) OS=Setaria italica
,95.07,0,THIOREDOXIN-LIKE PROTEN 4A, 4B,mRNA splicing factor,
thioredoxin-like U5 snRNP; Thioredoxin-like,Thi,CUFF.57499.1
         (142 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g045900.1 | mRNA splicing factor, thioredoxin-like U5 snRN...   297   3e-81
Medtr3g108770.1 | mRNA splicing factor, thioredoxin-like U5 snRN...   296   5e-81
Medtr3g108770.2 | mRNA splicing factor, thioredoxin-like U5 snRN...   296   5e-81
Medtr4g075190.1 | mRNA splicing factor, thioredoxin-like U5 snRN...   285   7e-78
Medtr1g080840.1 | thioredoxin-like protein 4B | HC | chr1:359615...    82   2e-16
Medtr5g075850.1 | component of the U4/U6.U5 snRNP/mitosis protei...    81   2e-16
Medtr1g054195.1 | mitosis protein DIM1 | LC | chr1:23203866-2320...    72   2e-13
Medtr5g075820.1 | mitosis protein DIM1 | LC | chr5:32255215-3225...    70   5e-13

>Medtr1g045900.1 | mRNA splicing factor, thioredoxin-like U5 snRNP
           protein | HC | chr1:17280905-17278305 | 20130731
          Length = 142

 Score =  297 bits (760), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 140/142 (98%), Positives = 142/142 (100%)

Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVL+SVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAMKDKQEFIDIIETIY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAMKDKQEFIDIIET+Y
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAMKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 142
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142


>Medtr3g108770.1 | mRNA splicing factor, thioredoxin-like U5 snRNP
           protein | HC | chr3:50238238-50236330 | 20130731
          Length = 142

 Score =  296 bits (757), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 139/142 (97%), Positives = 142/142 (100%)

Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSY+LPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVL+SVAETIKNFAVIYL
Sbjct: 1   MSYMLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAMKDKQEFIDIIETIY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAMKDKQEFIDIIET+Y
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAMKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 142
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142


>Medtr3g108770.2 | mRNA splicing factor, thioredoxin-like U5 snRNP
           protein | HC | chr3:50238434-50236330 | 20130731
          Length = 142

 Score =  296 bits (757), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 139/142 (97%), Positives = 142/142 (100%)

Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSY+LPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVL+SVAETIKNFAVIYL
Sbjct: 1   MSYMLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAMKDKQEFIDIIETIY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAMKDKQEFIDIIET+Y
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAMKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 142
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142


>Medtr4g075190.1 | mRNA splicing factor, thioredoxin-like U5 snRNP
           protein | HC | chr4:28719124-28719705 | 20130731
          Length = 142

 Score =  285 bits (730), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 132/142 (92%), Positives = 139/142 (97%)

Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAIL EEERLVVIRFGHDWD+TCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILCEEERLVVIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAMKDKQEFIDIIETIY 120
           VDITEVPDFNTMYELYDP TVMFFFRNKHIMIDLGTGNNNKINWA++DKQEFIDI+ET++
Sbjct: 61  VDITEVPDFNTMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWALRDKQEFIDIVETVF 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 142
            GARKGRGLVI+PKDYSTKYRY
Sbjct: 121 HGARKGRGLVISPKDYSTKYRY 142


>Medtr1g080840.1 | thioredoxin-like protein 4B | HC |
           chr1:35961547-35964407 | 20130731
          Length = 162

 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 70/123 (56%), Gaps = 6/123 (4%)

Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSY+L  L     VD  I    ++++V+RFG + D  C+ +D++L+  A  +  FA + L
Sbjct: 1   MSYMLTTLSQKREVDSIIRDTIDKVLVLRFGRESDPNCLHLDQILSKAAREVSKFATVAL 60

Query: 61  VDITEVPDFNTMYELYD----PSTVMFFFRNKHIMIDLGTGNNNKINWAMKDKQEFIDII 116
           VD+ + PD     + +D    PST +FFF   H+ +D GT ++ K   A   KQ+FID++
Sbjct: 61  VDV-DSPDIQVYVKYFDITLIPST-LFFFNAHHMKMDSGTADHTKWIGAFHKKQDFIDVV 118

Query: 117 ETI 119
           E I
Sbjct: 119 ERI 121


>Medtr5g075850.1 | component of the U4/U6.U5 snRNP/mitosis protein
           DIM1 | HC | chr5:32264894-32265058 | 20130731
          Length = 54

 Score = 81.3 bits (199), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/54 (70%), Positives = 46/54 (85%), Gaps = 2/54 (3%)

Query: 91  MIDLGTG--NNNKINWAMKDKQEFIDIIETIYRGARKGRGLVIAPKDYSTKYRY 142
           MIDLGTG  N+NKINW ++DKQEF+D +ET++ GAR+GRGLVI  KDYSTKY Y
Sbjct: 1   MIDLGTGKCNSNKINWVIRDKQEFVDTVETVFCGAREGRGLVIYRKDYSTKYCY 54


>Medtr1g054195.1 | mitosis protein DIM1 | LC |
           chr1:23203866-23204983 | 20130731
          Length = 220

 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 31/45 (68%), Positives = 40/45 (88%), Gaps = 1/45 (2%)

Query: 98  NNNKINWAMKDKQEFIDIIETIYRGARKGRG-LVIAPKDYSTKYR 141
           NNN INW ++D+QEFID++ET++ GARKGRG LVI+ +DYSTKYR
Sbjct: 175 NNNMINWTLRDEQEFIDMVETVFCGARKGRGDLVISHRDYSTKYR 219


>Medtr5g075820.1 | mitosis protein DIM1 | LC |
           chr5:32255215-32256012 | 20130731
          Length = 154

 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 30/45 (66%), Positives = 38/45 (84%)

Query: 98  NNNKINWAMKDKQEFIDIIETIYRGARKGRGLVIAPKDYSTKYRY 142
           N+NKINW ++DKQEF+D +ET++  AR+GRGLVI  KDYSTKY Y
Sbjct: 110 NSNKINWVLRDKQEFVDTVETVFCSAREGRGLVIYRKDYSTKYCY 154