Miyakogusa Predicted Gene

Lj6g3v0098510.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0098510.1 Non Characterized Hit- tr|D5A836|D5A836_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,43.17,4e-19,seg,NULL,CUFF.57523.1
         (149 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g045660.1 | transmembrane protein, putative | HC | chr1:17...   240   4e-64
Medtr1g045660.2 | transmembrane protein, putative | HC | chr1:17...   133   8e-32

>Medtr1g045660.1 | transmembrane protein, putative | HC |
           chr1:17144070-17137874 | 20130731
          Length = 150

 Score =  240 bits (612), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 118/149 (79%), Positives = 129/149 (86%), Gaps = 1/149 (0%)

Query: 1   MEVQQWWRLRFSFRSATMVVCFLNIVTAIFLLHGFLASS-YTRNKLSTANSNSAQLSYIK 59
           MEVQQWW+LRFSF++AT++VCFLNI+TAIFLLHGF  SS YTR KLST N+NSA+L+YIK
Sbjct: 1   MEVQQWWKLRFSFKNATILVCFLNIITAIFLLHGFFFSSPYTRTKLSTQNTNSAELNYIK 60

Query: 60  ESEEIRLAMLPLELIKRVREIEQEVYSEPEXXXXXXXXXXXXVDLSKRLKDLRSLNDAAG 119
           ESEEIRLAMLPLELIKRVREIEQE Y+EPE            VDLSKRLKD RSLNDAA 
Sbjct: 61  ESEEIRLAMLPLELIKRVREIEQEGYTEPETAQKKDTKQTAAVDLSKRLKDFRSLNDAAS 120

Query: 120 VKALEEWRKRKMERARQRQLEKNGTTSSQ 148
           +KALEEWRKRKMERARQRQLEKNGTTSSQ
Sbjct: 121 LKALEEWRKRKMERARQRQLEKNGTTSSQ 149


>Medtr1g045660.2 | transmembrane protein, putative | HC |
          chr1:17144070-17137840 | 20130731
          Length = 112

 Score =  133 bits (334), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 63/78 (80%), Positives = 73/78 (93%), Gaps = 1/78 (1%)

Query: 1  MEVQQWWRLRFSFRSATMVVCFLNIVTAIFLLHGFLASS-YTRNKLSTANSNSAQLSYIK 59
          MEVQQWW+LRFSF++AT++VCFLNI+TAIFLLHGF  SS YTR KLST N+NSA+L+YIK
Sbjct: 1  MEVQQWWKLRFSFKNATILVCFLNIITAIFLLHGFFFSSPYTRTKLSTQNTNSAELNYIK 60

Query: 60 ESEEIRLAMLPLELIKRV 77
          ESEEIRLAMLPLELIKR+
Sbjct: 61 ESEEIRLAMLPLELIKRL 78