Miyakogusa Predicted Gene

Lj6g3v0085380.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0085380.1 Non Characterized Hit- tr|K4BRZ9|K4BRZ9_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,38.6,7e-19,seg,NULL,CUFF.57484.1
         (293 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g045520.1 | transmembrane protein, putative | HC | chr1:17...   283   1e-76
Medtr4g088590.1 | hypothetical protein | LC | chr4:35212600-3521...   105   5e-23

>Medtr1g045520.1 | transmembrane protein, putative | HC |
           chr1:17078248-17082200 | 20130731
          Length = 296

 Score =  283 bits (724), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 164/300 (54%), Positives = 188/300 (62%), Gaps = 11/300 (3%)

Query: 1   METTHLHYCHQGSTFXXXXXXXXXXXXXXXXXXXXXXXXXSRSRAVSCSSNKIPRWDSNA 60
           MET H H+  QG+TF                         S SR +S SSN  PRW+SN 
Sbjct: 1   METHHHHHYCQGTTFLGHLPRPPQPLYSPHPWRPFSTKPISHSR-ISFSSNNFPRWNSND 59

Query: 61  ETFPPRNFSRANSQXXXXXXXXXXX-----FGNKRRWWSDDSPGIETE--SSGIWEDAID 113
           ETF P NF+  N++                FG KRRWWSD+      E  +SGI EDA+D
Sbjct: 60  ETFRPPNFNFNNARTTSQEEDEEEEYDDDEFGKKRRWWSDEYTEETEEEGNSGILEDALD 119

Query: 114 NMWIFKIFKSYGWTLPIILASWLLATGPKALLMTLAIPLGQSALALAFEKLWGRSESXXX 173
           ++WI K+FKSYGWTLPIILASWLL+TGPKA LM LAIPLGQSALALAFEKLWGR+ES   
Sbjct: 120 SLWILKVFKSYGWTLPIILASWLLSTGPKAFLMALAIPLGQSALALAFEKLWGRTESKPK 179

Query: 174 XXXXXXXXXXTANGNRVXXXXXXXXXXXXXXXXXYQSWVVENNGSVGTDRGNREAPSFGG 233
                       N +RV                  QSWVVENNGSV  D G+R+APSFGG
Sbjct: 180 RKYRMKRKRRNVNDSRV-EEEPEENQKTNTRKAGMQSWVVENNGSV--DSGSRDAPSFGG 236

Query: 234 WDELERSRPATRSSRAMGGSQRMPTEAGRLSRRERKSDTPLLLRLLIAVFPFLGSWTKML 293
           WD+LER+RP TR S+A  GSQRM  E GRLSRRERKSDTPLL+RLLIA+FPFLG+WTKML
Sbjct: 237 WDDLERARPTTRRSQARKGSQRMNVEGGRLSRRERKSDTPLLVRLLIAIFPFLGTWTKML 296


>Medtr4g088590.1 | hypothetical protein | LC |
           chr4:35212600-35213473 | 20130731
          Length = 151

 Score =  105 bits (262), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 61/113 (53%), Positives = 67/113 (59%), Gaps = 27/113 (23%)

Query: 119 KIFKSYGWTLPIILASWLLATGPKALLMTLAIPLGQSALALAFEKLWGRSESXXXXXXXX 178
           ++FKSYGWTLPIILASWLL+TGPKA LM LAI LGQSALALAFEKLWGR+ES        
Sbjct: 47  QVFKSYGWTLPIILASWLLSTGPKAFLMALAIALGQSALALAFEKLWGRTESKPKRKCRM 106

Query: 179 XXXXXTANGNRVXXXXXXXXXXXXXXXXXYQSWVVENNGSVGTDRGNREAPSF 231
                                          SWVVEN GSV  D G+R+APSF
Sbjct: 107 KRKRR-------------------------NSWVVENYGSV--DSGSRDAPSF 132